data_X58
# 
_chem_comp.id                                    X58 
_chem_comp.name                                  "(3S,4S)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H30 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-31 
_chem_comp.pdbx_modified_date                    2024-03-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.513 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X58 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8P73 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X58 C01 C1  C 0 1 N N N N N N 152.509 134.728 126.098 0.600  5.357  -1.447 C01 X58 1  
X58 C02 C2  C 0 1 N N N N N N 152.424 136.245 125.973 0.669  4.536  -0.157 C02 X58 2  
X58 C03 C3  C 0 1 N N N N N N 151.022 136.736 125.632 0.572  5.472  1.049  C03 X58 3  
X58 C04 C4  C 0 1 Y N N N N N 153.480 136.800 125.013 -0.475 3.555  -0.125 C04 X58 4  
X58 C05 C5  C 0 1 Y N N N N N 153.292 137.254 123.713 -1.827 3.870  -0.160 C05 X58 5  
X58 C08 C6  C 0 1 Y N N N N N 156.766 137.738 124.235 -1.846 0.318  0.009  C08 X58 6  
X58 C10 C7  C 0 1 N N N N N N 158.775 138.651 122.942 -3.331 -1.647 0.075  C10 X58 7  
X58 C11 C8  C 0 1 Y N N N N N 159.197 139.894 123.744 -4.808 -1.946 0.060  C11 X58 8  
X58 C12 C9  C 0 1 Y N N N N N 160.453 140.431 123.523 -5.509 -2.020 1.249  C12 X58 9  
X58 C13 C10 C 0 1 Y N N N N N 160.873 141.547 124.229 -6.864 -2.295 1.236  C13 X58 10 
X58 C14 C11 C 0 1 Y N N N N N 160.035 142.130 125.171 -7.517 -2.494 0.034  C14 X58 11 
X58 C15 C12 C 0 1 Y N N N N N 158.778 141.600 125.400 -6.816 -2.419 -1.155 C15 X58 12 
X58 C16 C13 C 0 1 Y N N N N N 158.359 140.487 124.686 -5.462 -2.140 -1.142 C16 X58 13 
X58 C17 C14 C 0 1 Y N N N N N 157.519 137.462 125.378 -0.766 -0.512 0.069  C17 X58 14 
X58 C18 C15 C 0 1 Y N N N N N 156.856 136.920 126.488 0.526  0.038  0.048  C18 X58 15 
X58 C20 C16 C 0 1 N N N N N N 156.789 136.045 128.837 2.981  -0.223 0.086  C20 X58 16 
X58 C21 C17 C 0 1 N N S N N N 156.439 137.105 129.898 4.013  -1.349 0.163  C21 X58 17 
X58 C23 C18 C 0 1 N N N N N N 157.702 137.691 130.404 3.838  -2.288 -1.033 C23 X58 18 
X58 C24 C19 C 0 1 N N N N N N 157.458 138.938 131.266 4.911  -3.377 -0.983 C24 X58 19 
X58 C26 C20 C 0 1 N N N N N N 155.184 139.241 130.364 6.451  -1.887 0.148  C26 X58 20 
X58 C27 C21 C 0 1 N N S N N N 155.508 138.147 129.338 5.424  -0.753 0.132  C27 X58 21 
X58 C30 C22 C 0 1 Y N N N N N 154.862 136.968 125.306 -0.367 2.172  -0.060 C30 X58 22 
X58 N06 N1  N 0 1 Y N N N N N 154.469 137.654 123.250 -2.524 2.759  -0.120 N06 X58 23 
X58 N07 N2  N 0 1 Y N N N N N 155.435 137.475 124.253 -1.643 1.674  -0.052 N07 X58 24 
X58 N09 N3  N 0 1 N N N N N N 157.366 138.315 123.038 -3.125 -0.198 0.009  N09 X58 25 
X58 N19 N4  N 0 1 N N N N N N 157.566 136.606 127.725 1.632  -0.794 0.108  N19 X58 26 
X58 N25 N5  N 0 1 N N N N N N 156.005 139.111 131.592 6.242  -2.757 -1.016 N25 X58 27 
X58 N29 N6  N 0 1 Y N N N N N 155.557 136.687 126.435 0.690  1.348  -0.010 N29 X58 28 
X58 O22 O1  O 0 1 N N N N N N 155.757 136.447 130.991 3.830  -2.082 1.376  O22 X58 29 
X58 O28 O2  O 0 1 N N N N N N 154.291 137.512 128.959 5.615  0.081  1.276  O28 X58 30 
X58 H1  H1  H 0 1 N N N N N N 151.735 134.373 126.795 -0.345 5.899  -1.482 H1  X58 31 
X58 H2  H2  H 0 1 N N N N N N 152.351 134.269 125.111 1.427  6.066  -1.470 H2  X58 32 
X58 H3  H3  H 0 1 N N N N N N 153.502 134.447 126.479 0.669  4.690  -2.306 H3  X58 33 
X58 H4  H4  H 0 1 N N N N N N 152.663 136.653 126.966 1.614  3.994  -0.122 H4  X58 34 
X58 H5  H5  H 0 1 N N N N N N 150.301 136.312 126.346 -0.373 6.014  1.013  H5  X58 35 
X58 H6  H6  H 0 1 N N N N N N 150.994 137.834 125.690 0.621  4.887  1.967  H6  X58 36 
X58 H7  H7  H 0 1 N N N N N N 150.759 136.416 124.613 1.399  6.181  1.025  H7  X58 37 
X58 H8  H8  H 0 1 N N N N N N 152.355 137.277 123.176 -2.238 4.867  -0.212 H8  X58 38 
X58 H9  H9  H 0 1 N N N N N N 159.357 137.793 123.309 -2.890 -2.035 0.993  H9  X58 39 
X58 H10 H10 H 0 1 N N N N N N 159.013 138.830 121.883 -2.856 -2.120 -0.785 H10 X58 40 
X58 H11 H11 H 0 1 N N N N N N 161.110 139.977 122.796 -4.999 -1.864 2.188  H11 X58 41 
X58 H12 H12 H 0 1 N N N N N N 161.853 141.964 124.047 -7.412 -2.353 2.165  H12 X58 42 
X58 H13 H13 H 0 1 N N N N N N 160.365 142.997 125.724 -8.576 -2.709 0.024  H13 X58 43 
X58 H14 H14 H 0 1 N N N N N N 158.125 142.051 126.132 -7.326 -2.575 -2.094 H14 X58 44 
X58 H15 H15 H 0 1 N N N N N N 157.375 140.077 124.862 -4.915 -2.078 -2.071 H15 X58 45 
X58 H16 H16 H 0 1 N N N N N N 158.580 137.660 125.406 -0.902 -1.582 0.118  H16 X58 46 
X58 H17 H17 H 0 1 N N N N N N 155.855 135.622 128.438 3.107  0.445  0.938  H17 X58 47 
X58 H18 H18 H 0 1 N N N N N N 157.378 135.248 129.314 3.123  0.337  -0.839 H18 X58 48 
X58 H19 H19 H 0 1 N N N N N N 158.224 136.937 131.011 2.850  -2.748 -0.993 H19 X58 49 
X58 H20 H20 H 0 1 N N N N N N 158.331 137.971 129.546 3.938  -1.721 -1.959 H20 X58 50 
X58 H21 H21 H 0 1 N N N N N N 158.024 138.840 132.204 4.802  -3.953 -0.064 H21 X58 51 
X58 H22 H22 H 0 1 N N N N N N 157.808 139.825 130.717 4.798  -4.039 -1.842 H22 X58 52 
X58 H23 H23 H 0 1 N N N N N N 155.378 140.223 129.909 7.457  -1.467 0.112  H23 X58 53 
X58 H24 H24 H 0 1 N N N N N N 154.121 139.168 130.638 6.335  -2.470 1.062  H24 X58 54 
X58 H25 H25 H 0 1 N N N N N N 155.980 138.615 128.462 5.549  -0.162 -0.775 H25 X58 55 
X58 H26 H26 H 0 1 N N N N N N 156.868 139.164 122.862 -3.889 0.399  -0.034 H26 X58 56 
X58 H27 H27 H 0 1 N N N N N N 158.282 135.946 127.498 1.514  -1.755 0.166  H27 X58 57 
X58 H28 H28 H 0 1 N N N N N N 155.892 139.935 132.147 6.383  -2.249 -1.877 H28 X58 58 
X58 H30 H30 H 0 1 N N N N N N 155.533 137.087 131.656 2.957  -2.489 1.462  H30 X58 59 
X58 H31 H31 H 0 1 N N N N N N 153.693 138.159 128.603 6.489  0.492  1.321  H31 X58 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X58 C10 N09 SING N N 1  
X58 C10 C11 SING N N 2  
X58 N09 C08 SING N N 3  
X58 N06 C05 DOUB Y N 4  
X58 N06 N07 SING Y N 5  
X58 C12 C11 DOUB Y N 6  
X58 C12 C13 SING Y N 7  
X58 C05 C04 SING Y N 8  
X58 C11 C16 SING Y N 9  
X58 C13 C14 DOUB Y N 10 
X58 C08 N07 SING Y N 11 
X58 C08 C17 DOUB Y N 12 
X58 N07 C30 SING Y N 13 
X58 C16 C15 DOUB Y N 14 
X58 C04 C30 DOUB Y N 15 
X58 C04 C02 SING N N 16 
X58 C14 C15 SING Y N 17 
X58 C30 N29 SING Y N 18 
X58 C17 C18 SING Y N 19 
X58 C03 C02 SING N N 20 
X58 C02 C01 SING N N 21 
X58 N29 C18 DOUB Y N 22 
X58 C18 N19 SING N N 23 
X58 N19 C20 SING N N 24 
X58 C20 C21 SING N N 25 
X58 O28 C27 SING N N 26 
X58 C27 C21 SING N N 27 
X58 C27 C26 SING N N 28 
X58 C21 C23 SING N N 29 
X58 C21 O22 SING N N 30 
X58 C26 N25 SING N N 31 
X58 C23 C24 SING N N 32 
X58 C24 N25 SING N N 33 
X58 C01 H1  SING N N 34 
X58 C01 H2  SING N N 35 
X58 C01 H3  SING N N 36 
X58 C02 H4  SING N N 37 
X58 C03 H5  SING N N 38 
X58 C03 H6  SING N N 39 
X58 C03 H7  SING N N 40 
X58 C05 H8  SING N N 41 
X58 C10 H9  SING N N 42 
X58 C10 H10 SING N N 43 
X58 C12 H11 SING N N 44 
X58 C13 H12 SING N N 45 
X58 C14 H13 SING N N 46 
X58 C15 H14 SING N N 47 
X58 C16 H15 SING N N 48 
X58 C17 H16 SING N N 49 
X58 C20 H17 SING N N 50 
X58 C20 H18 SING N N 51 
X58 C23 H19 SING N N 52 
X58 C23 H20 SING N N 53 
X58 C24 H21 SING N N 54 
X58 C24 H22 SING N N 55 
X58 C26 H23 SING N N 56 
X58 C26 H24 SING N N 57 
X58 C27 H25 SING N N 58 
X58 N09 H26 SING N N 59 
X58 N19 H27 SING N N 60 
X58 N25 H28 SING N N 61 
X58 O22 H30 SING N N 62 
X58 O28 H31 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X58 InChI            InChI                1.06  "InChI=1S/C22H30N6O2/c1-15(2)17-12-26-28-20(24-11-16-6-4-3-5-7-16)10-19(27-21(17)28)25-14-22(30)8-9-23-13-18(22)29/h3-7,10,12,15,18,23-24,29-30H,8-9,11,13-14H2,1-2H3,(H,25,27)/t18-,22-/m0/s1" 
X58 InChIKey         InChI                1.06  OVDMCYNLHNMECD-AVRDEDQJSA-N                                                                                                                                                                     
X58 SMILES_CANONICAL CACTVS               3.385 "CC(C)c1cnn2c(NCc3ccccc3)cc(NC[C@@]4(O)CCNC[C@@H]4O)nc12"                                                                                                                                       
X58 SMILES           CACTVS               3.385 "CC(C)c1cnn2c(NCc3ccccc3)cc(NC[C]4(O)CCNC[CH]4O)nc12"                                                                                                                                           
X58 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)c1cnn2c1nc(cc2NCc3ccccc3)NC[C@]4(CCNC[C@@H]4O)O"                                                                                                                                          
X58 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)c1cnn2c1nc(cc2NCc3ccccc3)NCC4(CCNCC4O)O"                                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           X58 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},4~{S})-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidine-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X58 "Create component" 2023-05-31 PDBE 
X58 "Initial release"  2024-03-20 RCSB 
# 
