data_X38
# 
_chem_comp.id                                    X38 
_chem_comp.name                                  "(4S)-5-amino-4-{1,3-dioxo-4-[(2-{2-[2-(4-sulfamoylbenzamido)ethoxy]ethoxy}ethyl)amino]-1,3-dihydro-2H-isoindol-2-yl}-5-oxopentanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H31 N5 O10 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-10-26 
_chem_comp.pdbx_modified_date                    2023-02-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        605.617 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X38 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EXG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X38 C02  C1  C 0 1 N N N 16.780 11.464 10.743 -4.997  0.023  0.093  C02  X38 1  
X38 C04  C2  C 0 1 N N S 14.955 10.161 9.449  -7.064  -1.324 0.407  C04  X38 2  
X38 C05  C3  C 0 1 N N N 14.359 10.590 8.102  -7.266  -2.608 -0.357 C05  X38 3  
X38 C08  C4  C 0 1 N N N 13.950 9.571  10.433 -8.415  -0.639 0.618  C08  X38 4  
X38 C09  C5  C 0 1 N N N 14.662 8.767  11.521 -8.228  0.598  1.499  C09  X38 5  
X38 C10  C6  C 0 1 N N N 14.826 7.317  11.085 -9.559  1.273  1.707  C10  X38 6  
X38 C13  C7  C 0 1 N N N 15.039 12.593 10.176 -6.444  0.024  -1.589 C13  X38 7  
X38 C14  C8  C 0 1 Y N N 15.915 13.651 10.920 -5.320  0.882  -2.019 C14  X38 8  
X38 C15  C9  C 0 1 Y N N 17.084 12.895 11.301 -4.401  0.877  -0.948 C15  X38 9  
X38 C16  C10 C 0 1 Y N N 18.106 13.521 11.988 -3.216  1.603  -1.052 C16  X38 10 
X38 C18  C11 C 0 1 N N N 20.361 12.463 11.480 -1.061  2.371  -0.120 C18  X38 11 
X38 C19  C12 C 0 1 N N N 21.406 11.723 12.310 -0.241  2.207  1.161  C19  X38 12 
X38 C21  C13 C 0 1 N N N 21.302 10.689 14.409 0.941   0.581  2.466  C21  X38 13 
X38 C22  C14 C 0 1 N N N 19.991 9.935  14.640 1.318   -0.902 2.506  C22  X38 14 
X38 C24  C15 C 0 1 N N N 19.599 7.774  13.787 2.591   -2.571 1.350  C24  X38 15 
X38 C25  C16 C 0 1 N N N 18.824 7.020  12.678 3.504   -2.779 0.140  C25  X38 16 
X38 C27  C17 C 0 1 N N N 17.097 5.668  13.877 5.696   -2.040 -0.627 C27  X38 17 
X38 C28  C18 C 0 1 Y N N 16.649 4.401  14.581 6.940   -1.263 -0.445 C28  X38 18 
X38 C29  C19 C 0 1 Y N N 17.541 3.364  14.788 7.935   -1.292 -1.423 C29  X38 19 
X38 C30  C20 C 0 1 Y N N 17.134 2.236  15.478 9.093   -0.565 -1.247 C30  X38 20 
X38 C31  C21 C 0 1 Y N N 15.845 2.165  15.967 9.271   0.193  -0.104 C31  X38 21 
X38 C36  C22 C 0 1 Y N N 14.966 3.214  15.803 8.289   0.227  0.871  C36  X38 22 
X38 C37  C23 C 0 1 Y N N 15.376 4.342  15.120 7.123   -0.491 0.704  C37  X38 23 
X38 C39  C24 C 0 1 Y N N 18.007 14.878 12.329 -2.953  2.327  -2.217 C39  X38 24 
X38 C40  C25 C 0 1 Y N N 16.858 15.618 11.954 -3.856  2.326  -3.257 C40  X38 25 
X38 C41  C26 C 0 1 Y N N 15.820 14.990 11.251 -5.040  1.606  -3.164 C41  X38 26 
X38 N03  N1  N 0 1 N N N 15.571 11.322 10.082 -6.180  -0.438 -0.353 N03  X38 27 
X38 N06  N2  N 0 1 N N N 12.989 10.273 7.740  -8.048  -3.580 0.153  N06  X38 28 
X38 N17  N3  N 0 1 N N N 19.274 12.766 12.388 -2.305  1.606  -0.006 N17  X38 29 
X38 N26  N4  N 0 1 N N N 18.408 5.758  13.270 4.737   -2.009 0.320  N26  X38 30 
X38 N33  N5  N 0 1 N N N 15.864 -0.732 16.151 10.498  2.617  -0.544 N33  X38 31 
X38 O01  O1  O 0 1 N N N 17.542 10.562 10.878 -4.501  -0.228 1.173  O01  X38 32 
X38 O07  O2  O 0 1 N N N 15.038 11.186 7.330  -6.724  -2.766 -1.431 O07  X38 33 
X38 O11  O3  O 0 1 N N N 14.845 6.387  11.948 -9.637  2.386  2.453  O11  X38 34 
X38 O12  O4  O 0 1 N N N 14.942 7.068  9.852  -10.555 0.813  1.202  O12  X38 35 
X38 O20  O5  O 0 1 N N N 21.047 11.851 13.664 0.165   0.844  1.295  O20  X38 36 
X38 O23  O6  O 0 1 N N N 19.711 9.149  13.509 2.178   -1.204 1.406  O23  X38 37 
X38 O34  O7  O 0 1 N N N 13.815 0.713  16.927 10.903  1.315  1.513  O34  X38 38 
X38 O35  O8  O 0 1 N N N 15.733 0.840  18.246 11.741  0.491  -0.693 O35  X38 39 
X38 O38  O9  O 0 1 N N N 16.372 6.598  13.857 5.537   -2.707 -1.630 O38  X38 40 
X38 O42  O10 O 0 1 N N N 13.980 12.875 9.716  -7.438  -0.225 -2.242 O42  X38 41 
X38 S32  S1  S 0 1 N N N 15.277 0.698  16.857 10.754  1.119  0.114  S32  X38 42 
X38 H041 H1  H 0 0 N N N 15.730 9.405  9.254  -6.613  -1.545 1.375  H041 X38 43 
X38 H082 H2  H 0 0 N N N 13.382 10.388 10.902 -8.825  -0.339 -0.346 H082 X38 44 
X38 H081 H3  H 0 0 N N N 13.259 8.909  9.890  -9.102  -1.331 1.105  H081 X38 45 
X38 H091 H4  H 0 0 N N N 15.654 9.205  11.705 -7.818  0.298  2.464  H091 X38 46 
X38 H092 H5  H 0 0 N N N 14.068 8.803  12.446 -7.541  1.290  1.012  H092 X38 47 
X38 H182 H6  H 0 0 N N N 20.786 13.391 11.069 -1.295  3.425  -0.269 H182 X38 48 
X38 H181 H7  H 0 0 N N N 20.005 11.826 10.657 -0.485  2.004  -0.970 H181 X38 49 
X38 H192 H8  H 0 0 N N N 21.425 10.660 12.027 0.641   2.845  1.112  H192 X38 50 
X38 H191 H9  H 0 0 N N N 22.399 12.165 12.142 -0.848  2.492  2.020  H191 X38 51 
X38 H211 H10 H 0 0 N N N 22.003 10.046 13.857 0.358   0.831  3.352  H211 X38 52 
X38 H212 H11 H 0 0 N N N 21.743 10.964 15.379 1.848   1.185  2.444  H212 X38 53 
X38 H221 H12 H 0 0 N N N 19.175 10.655 14.800 1.833   -1.121 3.441  H221 X38 54 
X38 H222 H13 H 0 0 N N N 20.088 9.288  15.524 0.414   -1.508 2.438  H222 X38 55 
X38 H241 H14 H 0 0 N N N 19.067 7.647  14.741 1.714   -3.212 1.258  H241 X38 56 
X38 H242 H15 H 0 0 N N N 20.608 7.345  13.870 3.133   -2.825 2.261  H242 X38 57 
X38 H251 H16 H 0 0 N N N 19.476 6.839  11.811 3.747   -3.838 0.046  H251 X38 58 
X38 H252 H17 H 0 0 N N N 17.946 7.602  12.362 2.994   -2.442 -0.762 H252 X38 59 
X38 H291 H18 H 0 0 N N N 18.551 3.435  14.412 7.798   -1.884 -2.317 H291 X38 60 
X38 H301 H19 H 0 0 N N N 17.820 1.416  15.633 9.864   -0.587 -2.004 H301 X38 61 
X38 H361 H20 H 0 0 N N N 13.965 3.154  16.205 8.434   0.820  1.762  H361 X38 62 
X38 H371 H21 H 0 0 N N N 14.703 5.179  15.006 6.355   -0.460 1.463  H371 X38 63 
X38 H391 H22 H 0 0 N N N 18.805 15.358 12.876 -2.036  2.892  -2.302 H391 X38 64 
X38 H401 H23 H 0 0 N N N 16.782 16.665 12.209 -3.642  2.891  -4.152 H401 X38 65 
X38 H411 H24 H 0 0 N N N 14.944 15.554 10.967 -5.742  1.611  -3.986 H411 X38 66 
X38 H061 H25 H 0 0 N N N 12.629 10.556 6.851  -8.481  -3.453 1.012  H061 X38 67 
X38 H062 H26 H 0 0 N N N 12.406 9.772  8.380  -8.178  -4.406 -0.339 H062 X38 68 
X38 H171 H27 H 0 0 N N N 18.934 11.885 12.716 -2.491  1.102  0.802  H171 X38 69 
X38 H261 H28 H 0 0 N N N 19.018 4.966  13.258 4.864   -1.477 1.121  H261 X38 70 
X38 H331 H29 H 0 0 N N N 15.531 -1.521 16.668 9.642   2.829  -0.948 H331 X38 71 
X38 H1   H30 H 0 1 N N N 15.543 -0.793 15.206 11.203  3.283  -0.524 H1   X38 72 
X38 H2   H31 H 0 1 N N N 14.954 5.551  11.511 -10.513 2.784  2.558  H2   X38 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X38 O07 C05  DOUB N N 1  
X38 N06 C05  SING N N 2  
X38 C05 C04  SING N N 3  
X38 C04 N03  SING N N 4  
X38 C04 C08  SING N N 5  
X38 O42 C13  DOUB N N 6  
X38 O12 C10  DOUB N N 7  
X38 N03 C13  SING N N 8  
X38 N03 C02  SING N N 9  
X38 C13 C14  SING N N 10 
X38 C08 C09  SING N N 11 
X38 C02 O01  DOUB N N 12 
X38 C02 C15  SING N N 13 
X38 C14 C41  DOUB Y N 14 
X38 C14 C15  SING Y N 15 
X38 C10 C09  SING N N 16 
X38 C10 O11  SING N N 17 
X38 C41 C40  SING Y N 18 
X38 C15 C16  DOUB Y N 19 
X38 C18 C19  SING N N 20 
X38 C18 N17  SING N N 21 
X38 C40 C39  DOUB Y N 22 
X38 C16 C39  SING Y N 23 
X38 C16 N17  SING N N 24 
X38 C19 O20  SING N N 25 
X38 C25 N26  SING N N 26 
X38 C25 C24  SING N N 27 
X38 N26 C27  SING N N 28 
X38 O23 C24  SING N N 29 
X38 O23 C22  SING N N 30 
X38 O20 C21  SING N N 31 
X38 O38 C27  DOUB N N 32 
X38 C27 C28  SING N N 33 
X38 C21 C22  SING N N 34 
X38 C28 C29  DOUB Y N 35 
X38 C28 C37  SING Y N 36 
X38 C29 C30  SING Y N 37 
X38 C37 C36  DOUB Y N 38 
X38 C30 C31  DOUB Y N 39 
X38 C36 C31  SING Y N 40 
X38 C31 S32  SING N N 41 
X38 N33 S32  SING N N 42 
X38 S32 O34  DOUB N N 43 
X38 S32 O35  DOUB N N 44 
X38 C04 H041 SING N N 45 
X38 C08 H082 SING N N 46 
X38 C08 H081 SING N N 47 
X38 C09 H091 SING N N 48 
X38 C09 H092 SING N N 49 
X38 C18 H182 SING N N 50 
X38 C18 H181 SING N N 51 
X38 C19 H192 SING N N 52 
X38 C19 H191 SING N N 53 
X38 C21 H211 SING N N 54 
X38 C21 H212 SING N N 55 
X38 C22 H221 SING N N 56 
X38 C22 H222 SING N N 57 
X38 C24 H241 SING N N 58 
X38 C24 H242 SING N N 59 
X38 C25 H251 SING N N 60 
X38 C25 H252 SING N N 61 
X38 C29 H291 SING N N 62 
X38 C30 H301 SING N N 63 
X38 C36 H361 SING N N 64 
X38 C37 H371 SING N N 65 
X38 C39 H391 SING N N 66 
X38 C40 H401 SING N N 67 
X38 C41 H411 SING N N 68 
X38 N06 H061 SING N N 69 
X38 N06 H062 SING N N 70 
X38 N17 H171 SING N N 71 
X38 N26 H261 SING N N 72 
X38 N33 H331 SING N N 73 
X38 N33 H1   SING N N 74 
X38 O11 H2   SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X38 SMILES           ACDLabs              12.01 "NS(=O)(=O)c1ccc(cc1)C(=O)NCCOCCOCCNc1cccc2C(=O)N(C(=O)c21)C(CCC(=O)O)C(N)=O"                                                                                                                                                  
X38 InChI            InChI                1.06  "InChI=1S/C26H31N5O10S/c27-23(34)20(8-9-21(32)33)31-25(36)18-2-1-3-19(22(18)26(31)37)29-10-12-40-14-15-41-13-11-30-24(35)16-4-6-17(7-5-16)42(28,38)39/h1-7,20,29H,8-15H2,(H2,27,34)(H,30,35)(H,32,33)(H2,28,38,39)/t20-/m0/s1" 
X38 InChIKey         InChI                1.06  WPQDVFZMJJMLNI-FQEVSTJZSA-N                                                                                                                                                                                                    
X38 SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@H](CCC(O)=O)N1C(=O)c2cccc(NCCOCCOCCNC(=O)c3ccc(cc3)[S](N)(=O)=O)c2C1=O"                                                                                                                                              
X38 SMILES           CACTVS               3.385 "NC(=O)[CH](CCC(O)=O)N1C(=O)c2cccc(NCCOCCOCCNC(=O)c3ccc(cc3)[S](N)(=O)=O)c2C1=O"                                                                                                                                               
X38 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCOCCOCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)[C@@H](CCC(=O)O)C(=O)N"                                                                                                                                           
X38 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc2c(c(c1)NCCOCCOCCNC(=O)c3ccc(cc3)S(=O)(=O)N)C(=O)N(C2=O)C(CCC(=O)O)C(=O)N"                                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X38 "SYSTEMATIC NAME" ACDLabs              12.01 "(4S)-5-amino-4-{1,3-dioxo-4-[(2-{2-[2-(4-sulfamoylbenzamido)ethoxy]ethoxy}ethyl)amino]-1,3-dihydro-2H-isoindol-2-yl}-5-oxopentanoic acid"                       
X38 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(4~{S})-5-azanyl-4-[1,3-bis(oxidanylidene)-4-[2-[2-[2-[(4-sulfamoylphenyl)carbonylamino]ethoxy]ethoxy]ethylamino]isoindol-2-yl]-5-oxidanylidene-pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X38 "Create component" 2022-10-26 RCSB 
X38 "Initial release"  2023-02-22 RCSB 
# 
