data_X18
# 
_chem_comp.id                                    X18 
_chem_comp.name                                  "N-[(1S)-1-(5-bromopyridin-2-yl)ethyl]-3-[(2R)-3,3-dimethylbutan-2-yl]-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H25 Br N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-30 
_chem_comp.pdbx_modified_date                    2023-12-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        445.353 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X18 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8SZ3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X18 C10  C1  C  0 1 Y N N N N N -5.818 13.995 44.973 5.821  -0.054 -0.270 C10  X18 1  
X18 C13  C2  C  0 1 Y N N N N N -5.879 13.334 42.682 4.465  1.904  -0.230 C13  X18 2  
X18 C15  C3  C  0 1 Y N N N N N -1.900 8.021  41.773 -2.578 0.507  0.403  C15  X18 3  
X18 C20  C4  C  0 1 N N N N N N 0.005  6.442  38.783 -6.304 0.731  -1.418 C20  X18 4  
X18 C21  C5  C  0 1 N N N N N N 1.001  6.704  37.642 -7.050 2.028  -1.738 C21  X18 5  
X18 C22  C6  C  0 1 N N N N N N -1.188 7.372  38.595 -5.155 0.546  -2.411 C22  X18 6  
X18 C24  C7  C  0 1 N N N N N N 0.250  4.953  41.970 -5.443 -1.649 0.417  C24  X18 7  
X18 C28  C8  C  0 1 Y N N N N N -2.674 6.316  43.874 -1.920 -2.157 0.890  C28  X18 8  
X18 C01  C9  C  0 1 Y N N N N N -3.377 7.523  43.647 -0.927 -1.203 0.853  C01  X18 9  
X18 C02  C10 C  0 1 Y N N N N N -2.983 8.381  42.604 -1.248 0.136  0.609  C02  X18 10 
X18 C03  C11 C  0 1 N N N N N N -3.737 9.706  42.302 -0.182 1.156  0.570  C03  X18 11 
X18 C05  C12 C  0 1 N N S N N N -6.005 10.927 42.062 2.160  1.809  0.729  C05  X18 12 
X18 C06  C13 C  0 1 N N N N N N -7.465 10.517 41.875 2.286  2.469  2.103  C06  X18 13 
X18 C07  C14 C  0 1 Y N N N N N -5.931 12.023 43.121 3.468  1.154  0.365  C07  X18 14 
X18 C09  C15 C  0 1 Y N N N N N -5.877 12.663 45.350 4.783  -0.738 0.337  C09  X18 15 
X18 C12  C16 C  0 1 Y N N N N N -5.820 14.346 43.629 5.664  1.293  -0.561 C12  X18 16 
X18 C16  C17 C  0 1 Y N N N N N -1.189 6.809  41.989 -3.572 -0.453 0.441  C16  X18 17 
X18 C18  C18 C  0 1 N N R N N N 0.730  6.689  40.140 -5.744 0.802  0.004  C18  X18 18 
X18 C19  C19 C  0 1 N N N N N N 1.085  8.156  40.297 -6.898 0.895  1.003  C19  X18 19 
X18 C23  C20 C  0 1 N N N N N N -0.463 4.991  38.688 -7.268 -0.452 -1.528 C23  X18 20 
X18 C27  C21 C  0 1 Y N N N N N -1.579 5.964  43.038 -3.244 -1.791 0.685  C27  X18 21 
X18 N04  N1  N  0 1 N N N N N N -5.223 9.726  42.373 1.102  0.796  0.768  N04  X18 22 
X18 N08  N2  N  0 1 Y N N N N N -5.934 11.721 44.417 3.654  -0.124 0.632  N08  X18 23 
X18 N17  N3  N  0 1 N N N N N N -0.030 6.187  41.292 -4.955 -0.402 0.279  N17  X18 24 
X18 N26  N4  N  0 1 N N N N N N -0.687 4.789  43.042 -4.434 -2.506 0.663  N26  X18 25 
X18 O14  O1  O  0 1 N N N N N N -3.142 10.676 41.997 -0.461 2.320  0.357  O14  X18 26 
X18 O25  O2  O  0 1 N N N N N N 1.110  4.191  41.690 -6.617 -1.955 0.334  O25  X18 27 
X18 BR11 BR1 BR 0 0 N N N N N N -5.734 15.405 46.310 7.436  -0.943 -0.689 BR11 X18 28 
X18 H1   H1  H  0 1 N N N N N N -5.884 13.564 41.627 4.306  2.950  -0.446 H1   X18 29 
X18 H2   H2  H  0 1 N N N N N N -1.608 8.674  40.964 -2.830 1.541  0.220  H2   X18 30 
X18 H3   H3  H  0 1 N N N N N N 1.873  6.043  37.756 -6.364 2.871  -1.660 H3   X18 31 
X18 H4   H4  H  0 1 N N N N N N 0.513  6.504  36.677 -7.450 1.977  -2.751 H4   X18 32 
X18 H5   H5  H  0 1 N N N N N N 1.330  7.753  37.676 -7.869 2.159  -1.031 H5   X18 33 
X18 H6   H6  H  0 1 N N N N N N -1.916 7.203  39.402 -4.623 -0.377 -2.183 H6   X18 34 
X18 H7   H7  H  0 1 N N N N N N -0.846 8.417  38.623 -5.554 0.496  -3.424 H7   X18 35 
X18 H8   H8  H  0 1 N N N N N N -1.663 7.168  37.624 -4.468 1.389  -2.333 H8   X18 36 
X18 H9   H9  H  0 1 N N N N N N -2.969 5.663  44.682 -1.668 -3.190 1.078  H9   X18 37 
X18 H10  H10 H  0 1 N N N N N N -4.216 7.785  44.274 0.102  -1.490 1.011  H10  X18 38 
X18 H11  H11 H  0 1 N N N N N N -5.645 11.347 41.111 1.913  2.565  -0.016 H11  X18 39 
X18 H12  H12 H  0 1 N N N N N N -8.069 11.406 41.641 1.340  2.942  2.367  H12  X18 40 
X18 H13  H13 H  0 1 N N N N N N -7.540 9.795  41.049 2.533  1.713  2.849  H13  X18 41 
X18 H14  H14 H  0 1 N N N N N N -7.837 10.055 42.801 3.073  3.222  2.074  H14  X18 42 
X18 H15  H15 H  0 1 N N N N N N -5.877 12.393 46.396 4.898  -1.786 0.571  H15  X18 43 
X18 H16  H16 H  0 1 N N N N N N -5.777 15.382 43.328 6.458  1.852  -1.034 H16  X18 44 
X18 H17  H17 H  0 1 N N N N N N 1.677  6.131  40.096 -5.108 1.682  0.100  H17  X18 45 
X18 H18  H18 H  0 1 N N N N N N 1.595  8.309  41.259 -6.499 0.946  2.016  H18  X18 46 
X18 H19  H19 H  0 1 N N N N N N 1.751  8.462  39.476 -7.485 1.791  0.798  H19  X18 47 
X18 H20  H20 H  0 1 N N N N N N 0.166  8.760  40.269 -7.534 0.015  0.906  H20  X18 48 
X18 H21  H21 H  0 1 N N N N N N -1.178 4.782  39.497 -7.963 -0.433 -0.689 H21  X18 49 
X18 H22  H22 H  0 1 N N N N N N -0.951 4.826  37.716 -7.824 -0.383 -2.463 H22  X18 50 
X18 H23  H23 H  0 1 N N N N N N 0.403  4.320  38.782 -6.702 -1.384 -1.510 H23  X18 51 
X18 H24  H24 H  0 1 N N N N N N -5.705 8.892  42.642 1.325  -0.132 0.937  H24  X18 52 
X18 H25  H25 H  0 1 N N N N N N -0.729 4.018  43.677 -4.524 -3.462 0.801  H25  X18 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X18 C21 C20  SING N N 1  
X18 C22 C20  SING N N 2  
X18 C23 C20  SING N N 3  
X18 C20 C18  SING N N 4  
X18 C18 C19  SING N N 5  
X18 C18 N17  SING N N 6  
X18 N17 C24  SING N N 7  
X18 N17 C16  SING N N 8  
X18 O25 C24  DOUB N N 9  
X18 C15 C16  DOUB Y N 10 
X18 C15 C02  SING Y N 11 
X18 C06 C05  SING N N 12 
X18 C24 N26  SING N N 13 
X18 C16 C27  SING Y N 14 
X18 O14 C03  DOUB N N 15 
X18 C05 N04  SING N N 16 
X18 C05 C07  SING N N 17 
X18 C03 N04  SING N N 18 
X18 C03 C02  SING N N 19 
X18 C02 C01  DOUB Y N 20 
X18 C13 C07  DOUB Y N 21 
X18 C13 C12  SING Y N 22 
X18 C27 N26  SING N N 23 
X18 C27 C28  DOUB Y N 24 
X18 C07 N08  SING Y N 25 
X18 C12 C10  DOUB Y N 26 
X18 C01 C28  SING Y N 27 
X18 N08 C09  DOUB Y N 28 
X18 C10 C09  SING Y N 29 
X18 C10 BR11 SING N N 30 
X18 C13 H1   SING N N 31 
X18 C15 H2   SING N N 32 
X18 C21 H3   SING N N 33 
X18 C21 H4   SING N N 34 
X18 C21 H5   SING N N 35 
X18 C22 H6   SING N N 36 
X18 C22 H7   SING N N 37 
X18 C22 H8   SING N N 38 
X18 C28 H9   SING N N 39 
X18 C01 H10  SING N N 40 
X18 C05 H11  SING N N 41 
X18 C06 H12  SING N N 42 
X18 C06 H13  SING N N 43 
X18 C06 H14  SING N N 44 
X18 C09 H15  SING N N 45 
X18 C12 H16  SING N N 46 
X18 C18 H17  SING N N 47 
X18 C19 H18  SING N N 48 
X18 C19 H19  SING N N 49 
X18 C19 H20  SING N N 50 
X18 C23 H21  SING N N 51 
X18 C23 H22  SING N N 52 
X18 C23 H23  SING N N 53 
X18 N04 H24  SING N N 54 
X18 N26 H25  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X18 SMILES           ACDLabs              12.01 "Brc1ccc(nc1)C(C)NC(=O)c1ccc2NC(=O)N(c2c1)C(C)C(C)(C)C"                                                                                                     
X18 InChI            InChI                1.06  "InChI=1S/C21H25BrN4O2/c1-12(16-9-7-15(22)11-23-16)24-19(27)14-6-8-17-18(10-14)26(20(28)25-17)13(2)21(3,4)5/h6-13H,1-5H3,(H,24,27)(H,25,28)/t12-,13+/m0/s1" 
X18 InChIKey         InChI                1.06  DLMZWVVEARAWSJ-QWHCGFSZSA-N                                                                                                                                 
X18 SMILES_CANONICAL CACTVS               3.385 "C[C@H](NC(=O)c1ccc2NC(=O)N([C@H](C)C(C)(C)C)c2c1)c3ccc(Br)cn3"                                                                                             
X18 SMILES           CACTVS               3.385 "C[CH](NC(=O)c1ccc2NC(=O)N([CH](C)C(C)(C)C)c2c1)c3ccc(Br)cn3"                                                                                               
X18 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1ccc(cn1)Br)NC(=O)c2ccc3c(c2)N(C(=O)N3)[C@H](C)C(C)(C)C"                                                                                          
X18 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1ccc(cn1)Br)NC(=O)c2ccc3c(c2)N(C(=O)N3)C(C)C(C)(C)C"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
X18 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(1S)-1-(5-bromopyridin-2-yl)ethyl]-3-[(2R)-3,3-dimethylbutan-2-yl]-2-oxo-2,3-dihydro-1H-benzimidazole-5-carboxamide"              
X18 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-1-(5-bromanylpyridin-2-yl)ethyl]-3-[(2~{R})-3,3-dimethylbutan-2-yl]-2-oxidanylidene-1~{H}-benzimidazole-5-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X18 "Create component" 2023-05-30 RCSB 
X18 "Initial release"  2023-12-06 RCSB 
# 
