data_WU8
# 
_chem_comp.id                                    WU8 
_chem_comp.name                                  "3-dodecylsulfanyl-2,2-dimethyl-propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H34 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-13 
_chem_comp.pdbx_modified_date                    2024-10-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        302.516 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WU8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8QT2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WU8 C11 C1  C 0 1 N N N N N N 3.048  13.339 8.389  7.456   -0.714 0.001  C11 WU8 1  
WU8 C12 C2  C 0 1 N N N N N N 2.752  14.840 8.277  6.315   0.270  0.001  C12 WU8 2  
WU8 C13 C3  C 0 1 N N N N N N 2.256  15.136 6.857  6.399   1.150  1.250  C13 WU8 3  
WU8 C21 C4  C 0 1 N N N N N N -0.598 21.412 6.670  -2.847  -0.461 0.000  C21 WU8 4  
WU8 C14 C5  C 0 1 N N N N N N 4.013  15.662 8.562  6.400   1.149  -1.249 C14 WU8 5  
WU8 C17 C6  C 0 1 N N N N N N -0.513 16.619 8.204  2.149   -0.377 0.001  C17 WU8 6  
WU8 C18 C7  C 0 1 N N N N N N -1.357 17.870 8.067  0.886   0.485  0.000  C18 WU8 7  
WU8 C19 C8  C 0 1 N N N N N N -0.569 19.049 7.532  -0.349  -0.419 0.000  C19 WU8 8  
WU8 C20 C9  C 0 1 N N N N N N -1.420 20.241 7.151  -1.613  0.443  0.000  C20 WU8 9  
WU8 C15 C10 C 0 1 N N N N N N 1.601  15.175 9.238  4.986   -0.489 0.001  C15 WU8 10 
WU8 C22 C11 C 0 1 N N N N N N -0.141 22.331 7.776  -4.111  0.401  -0.000 C22 WU8 11 
WU8 C23 C12 C 0 1 N N N N N N -1.142 23.418 8.103  -5.345  -0.503 0.000  C23 WU8 12 
WU8 C24 C13 C 0 1 N N N N N N -0.488 24.661 8.659  -6.609  0.359  -0.000 C24 WU8 13 
WU8 C25 C14 C 0 1 N N N N N N 0.379  24.380 9.865  -7.843  -0.545 -0.000 C25 WU8 14 
WU8 C26 C15 C 0 1 N N N N N N 1.405  25.456 10.147 -9.107  0.317  -0.000 C26 WU8 15 
WU8 C27 C16 C 0 1 N N N N N N 2.299  25.101 11.307 -10.341 -0.587 -0.000 C27 WU8 16 
WU8 C28 C17 C 0 1 N N N N N N 3.466  26.055 11.468 -11.605 0.275  -0.001 C28 WU8 17 
WU8 O29 O1  O 0 1 N N N N N N 2.420  12.618 9.152  7.230   -1.901 0.001  O29 WU8 18 
WU8 S16 S1  S 0 1 N N N N N N 1.065  16.902 9.065  3.613   0.695  0.000  S16 WU8 19 
WU8 H2  H2  H 0 1 N N N N N N 2.039  16.210 6.760  7.346   1.691  1.250  H2  WU8 20 
WU8 H3  H3  H 0 1 N N N N N N 3.032  14.852 6.131  5.574   1.862  1.249  H3  WU8 21 
WU8 H4  H4  H 0 1 N N N N N N 1.341  14.558 6.660  6.339   0.524  2.140  H4  WU8 22 
WU8 H5  H5  H 0 1 N N N N N N 0.291  21.022 6.153  -2.836  -1.090 -0.890 H5  WU8 23 
WU8 H6  H6  H 0 1 N N N N N N -1.206 21.996 5.963  -2.836  -1.090 0.890  H6  WU8 24 
WU8 H7  H7  H 0 1 N N N N N N 4.368  15.449 9.581  6.339   0.522  -2.139 H7  WU8 25 
WU8 H8  H8  H 0 1 N N N N N N 4.796  15.394 7.838  5.574   1.861  -1.249 H8  WU8 26 
WU8 H9  H9  H 0 1 N N N N N N 3.780  16.733 8.472  7.346   1.690  -1.249 H9  WU8 27 
WU8 H10 H10 H 0 1 N N N N N N -1.089 15.870 8.768  2.160   -1.006 0.891  H10 WU8 28 
WU8 H11 H11 H 0 1 N N N N N N -0.296 16.233 7.197  2.160   -1.006 -0.889 H11 WU8 29 
WU8 H12 H12 H 0 1 N N N N N N -1.758 18.134 9.056  0.875   1.115  0.890  H12 WU8 30 
WU8 H13 H13 H 0 1 N N N N N N -2.189 17.660 7.378  0.875   1.114  -0.890 H13 WU8 31 
WU8 H14 H14 H 0 1 N N N N N N -0.018 18.719 6.639  -0.338  -1.048 -0.889 H14 WU8 32 
WU8 H15 H15 H 0 1 N N N N N N 0.144  19.368 8.307  -0.338  -1.048 0.891  H15 WU8 33 
WU8 H16 H16 H 0 1 N N N N N N -2.000 20.556 8.031  -1.623  1.072  -0.890 H16 WU8 34 
WU8 H17 H17 H 0 1 N N N N N N -2.108 19.940 6.347  -1.623  1.073  0.890  H17 WU8 35 
WU8 H18 H18 H 0 1 N N N N N N 0.750  14.514 9.019  4.926   -1.116 -0.889 H18 WU8 36 
WU8 H19 H19 H 0 1 N N N N N N 1.939  15.008 10.271 4.926   -1.115 0.891  H19 WU8 37 
WU8 H20 H20 H 0 1 N N N N N N 0.030  21.730 8.681  -4.121  1.031  0.890  H20 WU8 38 
WU8 H21 H21 H 0 1 N N N N N N 0.802  22.806 7.468  -4.121  1.030  -0.890 H21 WU8 39 
WU8 H22 H22 H 0 1 N N N N N N -1.684 23.686 7.184  -5.334  -1.133 -0.890 H22 WU8 40 
WU8 H23 H23 H 0 1 N N N N N N -1.852 23.030 8.848  -5.334  -1.132 0.890  H23 WU8 41 
WU8 H24 H24 H 0 1 N N N N N N 0.138  25.110 7.874  -6.620  0.989  0.890  H24 WU8 42 
WU8 H25 H25 H 0 1 N N N N N N -1.276 25.371 8.951  -6.619  0.988  -0.890 H25 WU8 43 
WU8 H26 H26 H 0 1 N N N N N N -0.273 24.284 10.746 -7.832  -1.174 -0.890 H26 WU8 44 
WU8 H27 H27 H 0 1 N N N N N N 0.910  23.431 9.697  -7.832  -1.174 0.890  H27 WU8 45 
WU8 H28 H28 H 0 1 N N N N N N 2.027  25.596 9.251  -9.118  0.947  0.889  H28 WU8 46 
WU8 H29 H29 H 0 1 N N N N N N 0.880  26.394 10.379 -9.118  0.946  -0.891 H29 WU8 47 
WU8 H30 H30 H 0 1 N N N N N N 1.700  25.120 12.230 -10.330 -1.217 -0.890 H30 WU8 48 
WU8 H31 H31 H 0 1 N N N N N N 2.694  24.087 11.147 -10.331 -1.216 0.890  H31 WU8 49 
WU8 H32 H32 H 0 1 N N N N N N 4.078  25.744 12.327 -11.616 0.905  0.889  H32 WU8 50 
WU8 H33 H33 H 0 1 N N N N N N 4.080  26.040 10.556 -11.616 0.904  -0.891 H33 WU8 51 
WU8 H34 H34 H 0 1 N N N N N N 3.086  27.073 11.638 -12.484 -0.369 -0.001 H34 WU8 52 
WU8 O1  O2  O 0 1 N Y N N N N 4.016  12.877 7.603  8.724   -0.272 -0.004 O1  WU8 53 
WU8 H1  H1  H 0 1 N Y N N N N 4.117  11.942 7.741  9.422   -0.941 -0.008 H1  WU8 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WU8 C21 C20 SING N N 1  
WU8 C21 C22 SING N N 2  
WU8 C13 C12 SING N N 3  
WU8 C20 C19 SING N N 4  
WU8 C19 C18 SING N N 5  
WU8 C22 C23 SING N N 6  
WU8 C18 C17 SING N N 7  
WU8 C23 C24 SING N N 8  
WU8 C17 S16 SING N N 9  
WU8 C12 C11 SING N N 10 
WU8 C12 C14 SING N N 11 
WU8 C12 C15 SING N N 12 
WU8 C11 O29 DOUB N N 13 
WU8 C24 C25 SING N N 14 
WU8 S16 C15 SING N N 15 
WU8 C25 C26 SING N N 16 
WU8 C26 C27 SING N N 17 
WU8 C27 C28 SING N N 18 
WU8 C13 H2  SING N N 19 
WU8 C13 H3  SING N N 20 
WU8 C13 H4  SING N N 21 
WU8 C21 H5  SING N N 22 
WU8 C21 H6  SING N N 23 
WU8 C14 H7  SING N N 24 
WU8 C14 H8  SING N N 25 
WU8 C14 H9  SING N N 26 
WU8 C17 H10 SING N N 27 
WU8 C17 H11 SING N N 28 
WU8 C18 H12 SING N N 29 
WU8 C18 H13 SING N N 30 
WU8 C19 H14 SING N N 31 
WU8 C19 H15 SING N N 32 
WU8 C20 H16 SING N N 33 
WU8 C20 H17 SING N N 34 
WU8 C15 H18 SING N N 35 
WU8 C15 H19 SING N N 36 
WU8 C22 H20 SING N N 37 
WU8 C22 H21 SING N N 38 
WU8 C23 H22 SING N N 39 
WU8 C23 H23 SING N N 40 
WU8 C24 H24 SING N N 41 
WU8 C24 H25 SING N N 42 
WU8 C25 H26 SING N N 43 
WU8 C25 H27 SING N N 44 
WU8 C26 H28 SING N N 45 
WU8 C26 H29 SING N N 46 
WU8 C27 H30 SING N N 47 
WU8 C27 H31 SING N N 48 
WU8 C28 H32 SING N N 49 
WU8 C28 H33 SING N N 50 
WU8 C28 H34 SING N N 51 
WU8 C11 O1  SING N N 52 
WU8 O1  H1  SING N N 53 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WU8 InChI            InChI                1.06  "InChI=1S/C17H34O2S/c1-4-5-6-7-8-9-10-11-12-13-14-20-15-17(2,3)16(18)19/h4-15H2,1-3H3,(H,18,19)" 
WU8 InChIKey         InChI                1.06  CBYMTUKZNNXAOB-UHFFFAOYSA-N                                                                      
WU8 SMILES_CANONICAL CACTVS               3.385 "CCCCCCCCCCCCSCC(C)(C)C(O)=O"                                                                    
WU8 SMILES           CACTVS               3.385 "CCCCCCCCCCCCSCC(C)(C)C(O)=O"                                                                    
WU8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSCC(C)(C)C(=O)O"                                                                    
WU8 SMILES           "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCCCCSCC(C)(C)C(=O)O"                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           WU8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "3-dodecylsulfanyl-2,2-dimethyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WU8 "Create component"   2023-10-13 PDBE 
WU8 "Modify coordinates" 2023-10-16 PDBE 
WU8 "Modify PCM"         2024-09-27 PDBE 
WU8 "Initial release"    2024-10-23 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            WU8 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
