data_W28
# 
_chem_comp.id                                    W28 
_chem_comp.name                                  "N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H30 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        414.498 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W28 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UAB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W28 C01 C1  C 0 1 N N N N N N -18.560 0.633  17.892 -1.507 2.754  2.173  C01 W28 1  
W28 C02 C2  C 0 1 N N N N N N -19.960 0.862  17.363 -1.255 3.131  0.712  C02 W28 2  
W28 C03 C3  C 0 1 N N N N N N -20.969 0.029  18.128 -1.244 4.655  0.574  C03 W28 3  
W28 C04 C4  C 0 1 N N N N N N -20.006 0.578  15.869 0.095  2.569  0.265  C04 W28 4  
W28 C05 C5  C 0 1 N N S N N N -19.258 1.600  15.020 0.033  1.040  0.256  C05 W28 5  
W28 N06 N1  N 0 1 N N N N N N -19.869 2.895  15.169 1.353  0.500  -0.079 N06 W28 6  
W28 C07 C6  C 0 1 N N N N N N -19.258 4.020  14.753 2.294  0.379  0.878  C07 W28 7  
W28 O08 O1  O 0 1 N N N N N N -18.204 4.014  14.120 2.020  0.629  2.036  O08 W28 8  
W28 C09 C7  C 0 1 Y N N N N N -19.915 5.278  15.114 3.654  -0.055 0.521  C09 W28 9  
W28 C10 C8  C 0 1 Y N N N N N -21.056 5.556  15.814 4.684  -0.213 1.393  C10 W28 10 
W28 C11 C9  C 0 1 Y N N N N N -21.192 6.966  15.853 5.812  -0.642 0.653  C11 W28 11 
W28 C12 C10 C 0 1 Y N N N N N -22.128 7.849  16.407 7.130  -0.959 1.006  C12 W28 12 
W28 C13 C11 C 0 1 Y N N N N N -21.941 9.199  16.249 8.015  -1.352 0.044  C13 W28 13 
W28 C14 C12 C 0 1 Y N N N N N -20.844 9.701  15.553 7.621  -1.441 -1.285 C14 W28 14 
W28 C15 C13 C 0 1 Y N N N N N -19.906 8.868  14.992 6.331  -1.135 -1.657 C15 W28 15 
W28 C16 C14 C 0 1 Y N N N N N -20.089 7.499  15.150 5.411  -0.731 -0.694 C16 W28 16 
W28 N17 N2  N 0 1 Y N N N N N -19.329 6.453  14.711 4.084  -0.373 -0.752 N17 W28 17 
W28 C18 C15 C 0 1 N N N N N N -19.223 1.179  13.552 -0.972 0.584  -0.770 C18 W28 18 
W28 O19 O2  O 0 1 N N N N N N -20.219 1.306  12.840 -0.597 0.208  -1.861 O19 W28 19 
W28 N20 N3  N 0 1 N N N N N N -18.069 0.674  13.102 -2.287 0.593  -0.476 N20 W28 20 
W28 C21 C16 C 0 1 N N S N N N -17.915 0.178  11.734 -3.254 0.039  -1.427 C21 W28 21 
W28 C22 C17 C 0 1 N N N N N N -16.835 0.973  11.004 -4.536 -0.345 -0.685 C22 W28 22 
W28 C23 C18 C 0 1 N N S N N N -17.282 2.399  10.691 -4.235 -1.480 0.297  C23 W28 23 
W28 C24 C19 C 0 1 N N N N N N -18.518 2.545  9.801  -3.800 -2.753 -0.463 C24 W28 24 
W28 C25 C20 C 0 1 N N N N N N -18.250 3.815  9.012  -4.444 -3.867 0.393  C25 W28 25 
W28 N26 N4  N 0 1 N N N N N N -16.798 3.928  9.032  -5.587 -3.235 1.061  N26 W28 26 
W28 C27 C21 C 0 1 N N N N N N -16.206 3.168  9.943  -5.493 -1.892 1.030  C27 W28 27 
W28 O28 O3  O 0 1 N N N N N N -14.995 3.098  10.167 -6.299 -1.128 1.516  O28 W28 28 
W28 C29 C22 C 0 1 N N N N N N -17.565 -1.292 11.776 -3.578 1.087  -2.494 C29 W28 29 
W28 O30 O4  O 0 1 N N N N N N -17.536 -1.843 10.468 -4.240 2.198  -1.885 O30 W28 30 
W28 H1  H1  H 0 1 N N N N N N -18.537 0.841  18.972 -1.616 1.672  2.255  H1  W28 31 
W28 H2  H2  H 0 1 N N N N N N -18.267 -0.412 17.713 -0.665 3.081  2.783  H2  W28 32 
W28 H3  H3  H 0 1 N N N N N N -17.858 1.304  17.375 -2.419 3.238  2.522  H3  W28 33 
W28 H4  H4  H 0 1 N N N N N N -20.211 1.922  17.514 -2.047 2.716  0.088  H4  W28 34 
W28 H5  H5  H 0 1 N N N N N N -20.902 0.265  19.200 -0.453 5.071  1.198  H5  W28 35 
W28 H6  H6  H 0 1 N N N N N N -21.982 0.256  17.765 -1.065 4.924  -0.467 H6  W28 36 
W28 H7  H7  H 0 1 N N N N N N -20.755 -1.039 17.974 -2.206 5.056  0.892  H7  W28 37 
W28 H8  H8  H 0 1 N N N N N N -21.059 0.569  15.551 0.325  2.929  -0.738 H8  W28 38 
W28 H9  H9  H 0 1 N N N N N N -19.560 -0.412 15.691 0.872  2.897  0.956  H9  W28 39 
W28 H10 H10 H 0 1 N N N N N N -18.221 1.648  15.383 -0.266 0.683  1.242  H10 W28 40 
W28 H11 H11 H 0 1 N N N N N N -20.772 2.961  15.593 1.549  0.228  -0.989 H11 W28 41 
W28 H12 H12 H 0 1 N N N N N N -21.728 4.835  16.255 4.648  -0.043 2.459  H12 W28 42 
W28 H13 H13 H 0 1 N N N N N N -22.983 7.473  16.950 7.446  -0.892 2.037  H13 W28 43 
W28 H14 H14 H 0 1 N N N N N N -22.659 9.886  16.673 9.031  -1.596 0.319  H14 W28 44 
W28 H15 H15 H 0 1 N N N N N N -20.728 10.770 15.452 8.334  -1.755 -2.034 H15 W28 45 
W28 H16 H16 H 0 1 N N N N N N -19.059 9.262  14.449 6.035  -1.207 -2.693 H16 W28 46 
W28 H17 H17 H 0 1 N N N N N N -18.484 6.530  14.182 3.541  -0.346 -1.555 H17 W28 47 
W28 H18 H18 H 0 1 N N N N N N -17.285 0.634  13.721 -2.593 0.967  0.365  H18 W28 48 
W28 H19 H19 H 0 1 N N N N N N -18.865 0.300  11.193 -2.830 -0.845 -1.903 H19 W28 49 
W28 H20 H20 H 0 1 N N N N N N -16.595 0.461  10.060 -4.912 0.519  -0.138 H20 W28 50 
W28 H21 H21 H 0 1 N N N N N N -15.936 1.014  11.637 -5.286 -0.676 -1.403 H21 W28 51 
W28 H22 H22 H 0 1 N N N N N N -17.480 2.915  11.642 -3.464 -1.176 1.005  H22 W28 52 
W28 H23 H23 H 0 1 N N N N N N -19.429 2.647  10.409 -4.203 -2.759 -1.477 H23 W28 53 
W28 H24 H24 H 0 1 N N N N N N -18.621 1.681  9.129  -2.715 -2.849 -0.477 H24 W28 54 
W28 H25 H25 H 0 1 N N N N N N -18.719 4.685  9.496  -4.783 -4.683 -0.245 H25 W28 55 
W28 H26 H26 H 0 1 N N N N N N -18.623 3.724  7.981  -3.732 -4.236 1.131  H26 W28 56 
W28 H27 H27 H 0 1 N N N N N N -16.291 4.527  8.412  -6.317 -3.723 1.474  H27 W28 57 
W28 H28 H28 H 0 1 N N N N N N -18.319 -1.825 12.375 -2.654 1.426  -2.962 H28 W28 58 
W28 H29 H29 H 0 1 N N N N N N -16.575 -1.413 12.240 -4.228 0.647  -3.250 H29 W28 59 
W28 H30 H30 H 0 1 N N N N N N -17.315 -2.766 10.517 -4.475 2.902  -2.504 H30 W28 60 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W28 C25 N26 SING N N 1  
W28 C25 C24 SING N N 2  
W28 N26 C27 SING N N 3  
W28 C24 C23 SING N N 4  
W28 C27 O28 DOUB N N 5  
W28 C27 C23 SING N N 6  
W28 O30 C29 SING N N 7  
W28 C23 C22 SING N N 8  
W28 C22 C21 SING N N 9  
W28 C21 C29 SING N N 10 
W28 C21 N20 SING N N 11 
W28 O19 C18 DOUB N N 12 
W28 N20 C18 SING N N 13 
W28 C18 C05 SING N N 14 
W28 O08 C07 DOUB N N 15 
W28 N17 C09 SING Y N 16 
W28 N17 C16 SING Y N 17 
W28 C07 C09 SING N N 18 
W28 C07 N06 SING N N 19 
W28 C15 C16 DOUB Y N 20 
W28 C15 C14 SING Y N 21 
W28 C05 N06 SING N N 22 
W28 C05 C04 SING N N 23 
W28 C09 C10 DOUB Y N 24 
W28 C16 C11 SING Y N 25 
W28 C14 C13 DOUB Y N 26 
W28 C10 C11 SING Y N 27 
W28 C11 C12 DOUB Y N 28 
W28 C04 C02 SING N N 29 
W28 C13 C12 SING Y N 30 
W28 C02 C01 SING N N 31 
W28 C02 C03 SING N N 32 
W28 C01 H1  SING N N 33 
W28 C01 H2  SING N N 34 
W28 C01 H3  SING N N 35 
W28 C02 H4  SING N N 36 
W28 C03 H5  SING N N 37 
W28 C03 H6  SING N N 38 
W28 C03 H7  SING N N 39 
W28 C04 H8  SING N N 40 
W28 C04 H9  SING N N 41 
W28 C05 H10 SING N N 42 
W28 N06 H11 SING N N 43 
W28 C10 H12 SING N N 44 
W28 C12 H13 SING N N 45 
W28 C13 H14 SING N N 46 
W28 C14 H15 SING N N 47 
W28 C15 H16 SING N N 48 
W28 N17 H17 SING N N 49 
W28 N20 H18 SING N N 50 
W28 C21 H19 SING N N 51 
W28 C22 H20 SING N N 52 
W28 C22 H21 SING N N 53 
W28 C23 H22 SING N N 54 
W28 C24 H23 SING N N 55 
W28 C24 H24 SING N N 56 
W28 C25 H25 SING N N 57 
W28 C25 H26 SING N N 58 
W28 N26 H27 SING N N 59 
W28 C29 H28 SING N N 60 
W28 C29 H29 SING N N 61 
W28 O30 H30 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W28 SMILES           ACDLabs              12.01 "CC(C)CC(NC(=O)c1cc2ccccc2[NH]1)C(=O)NC(CC1CCNC1=O)CO"                                                                                                                                                     
W28 InChI            InChI                1.06  "InChI=1S/C22H30N4O4/c1-13(2)9-18(21(29)24-16(12-27)10-15-7-8-23-20(15)28)26-22(30)19-11-14-5-3-4-6-17(14)25-19/h3-6,11,13,15-16,18,25,27H,7-10,12H2,1-2H3,(H,23,28)(H,24,29)(H,26,30)/t15-,16-,18-/m0/s1" 
W28 InChIKey         InChI                1.06  GSGDUCVRBYFHMQ-BQFCYCMXSA-N                                                                                                                                                                                
W28 SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O"                                                                                                                                        
W28 SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[CH](CO)C[CH]3CCNC3=O"                                                                                                                                            
W28 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2"                                                                                                                                      
W28 SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2"                                                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
W28 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide"                                     
W28 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W28 "Create component"   2023-09-21 RCSB 
W28 "Other modification" 2024-01-22 RCSB 
W28 "Initial release"    2024-02-07 RCSB 
W28 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            W28 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C29 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
