data_VN8
# 
_chem_comp.id                                    VN8 
_chem_comp.name                                  "(3S,5aS,8aR)-3-benzyl-6-[(3,5-dichlorophenyl)methyl]-1,4-dimethyloctahydropyrrolo[3,2-e][1,4]diazepine-2,5-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H25 Cl2 N3 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-09-02 
_chem_comp.pdbx_modified_date                    2023-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        446.370 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VN8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8EA5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VN8 C1   C1  C  0 1 N N N -0.930 -16.555 21.545 2.164  2.863  0.121  C1   VN8 1  
VN8 C10  C2  C  0 1 N N N 3.219  -16.011 17.808 -0.930 -1.938 0.037  C10  VN8 2  
VN8 C12  C3  C  0 1 N N N 1.224  -17.354 17.129 -1.573 -0.098 1.487  C12  VN8 3  
VN8 C13  C4  C  0 1 Y N N 0.938  -16.685 15.818 -2.943 0.078  0.884  C13  VN8 4  
VN8 C14  C5  C  0 1 Y N N 0.597  -15.333 15.781 -3.832 -0.981 0.867  C14  VN8 5  
VN8 C15  C6  C  0 1 Y N N 0.333  -14.712 14.559 -5.089 -0.820 0.314  C15  VN8 6  
VN8 C17  C7  C  0 1 Y N N 0.414  -15.406 13.350 -5.457 0.401  -0.223 C17  VN8 7  
VN8 C18  C8  C  0 1 Y N N 0.763  -16.759 13.359 -4.568 1.460  -0.206 C18  VN8 8  
VN8 C20  C9  C  0 1 Y N N 1.016  -17.388 14.595 -3.312 1.299  0.353  C20  VN8 9  
VN8 C22  C10 C  0 1 N N N 3.890  -15.862 22.442 1.593  -2.583 -1.966 C22  VN8 10 
VN8 C23  C11 C  0 1 N N N 1.751  -14.962 21.740 2.343  -0.425 -1.728 C23  VN8 11 
VN8 C25  C12 C  0 1 N N S 0.670  -14.916 20.661 2.490  1.006  -1.407 C25  VN8 12 
VN8 C26  C13 C  0 1 N N N -0.481 -13.901 20.890 3.978  1.355  -1.464 C26  VN8 13 
VN8 C27  C14 C  0 1 Y N N 0.132  -12.652 20.367 4.695  0.684  -0.321 C27  VN8 14 
VN8 C28  C15 C  0 1 Y N N 0.393  -11.555 21.177 5.142  -0.618 -0.455 C28  VN8 15 
VN8 C29  C16 C  0 1 Y N N 0.997  -10.403 20.663 5.800  -1.234 0.594  C29  VN8 16 
VN8 C3   C17 C  0 1 N N N 0.828  -17.463 20.244 1.394  0.797  0.830  C3   VN8 17 
VN8 C30  C18 C  0 1 Y N N 1.405  -10.329 19.331 6.011  -0.548 1.776  C30  VN8 18 
VN8 C31  C19 C  0 1 Y N N 1.170  -11.423 18.505 5.564  0.753  1.909  C31  VN8 19 
VN8 C32  C20 C  0 1 Y N N 0.523  -12.550 19.020 4.912  1.371  0.858  C32  VN8 20 
VN8 C5   C21 C  0 1 N N S 2.090  -17.192 19.477 0.750  -0.511 0.940  C5   VN8 21 
VN8 C7   C22 C  0 1 N N R 3.231  -16.448 20.182 1.470  -1.680 0.272  C7   VN8 22 
VN8 C9   C23 C  0 1 N N N 3.733  -15.468 19.138 0.351  -2.766 0.278  C9   VN8 23 
VN8 N11  N1  N  0 1 N N N 1.817  -16.441 18.159 -0.636 -0.549 0.450  N11  VN8 24 
VN8 N2   N2  N  0 1 N N N 0.183  -16.305 20.702 1.983  1.432  -0.137 N2   VN8 25 
VN8 N21  N3  N  0 1 N N N 2.874  -15.749 21.450 1.841  -1.432 -1.094 N21  VN8 26 
VN8 O24  O1  O  0 1 N N N 1.626  -14.402 22.821 2.787  -0.719 -2.817 O24  VN8 27 
VN8 O4   O2  O  0 1 N N N 0.440  -18.609 20.446 1.372  1.426  1.867  O4   VN8 28 
VN8 CL16 CL1 CL 0 0 N N N -0.113 -13.041 14.535 -6.205 -2.150 0.292  CL16 VN8 29 
VN8 CL19 CL2 CL 0 0 N N N 0.856  -17.581 11.809 -5.029 2.992  -0.879 CL19 VN8 30 
VN8 H1   H1  H  0 1 N N N -1.376 -15.599 21.858 1.334  3.419  -0.313 H1   VN8 31 
VN8 H2   H2  H  0 1 N N N -1.679 -17.147 20.998 2.195  3.037  1.197  H2   VN8 32 
VN8 H3   H3  H  0 1 N N N -0.599 -17.113 22.433 3.100  3.197  -0.327 H3   VN8 33 
VN8 H4   H4  H  0 1 N N N 3.823  -16.864 17.465 -1.195 -1.963 -1.020 H4   VN8 34 
VN8 H5   H5  H  0 1 N N N 3.214  -15.230 17.034 -1.749 -2.338 0.636  H5   VN8 35 
VN8 H6   H6  H  0 1 N N N 0.280  -17.757 17.525 -1.232 0.852  1.897  H6   VN8 36 
VN8 H7   H7  H  0 1 N N N 1.929  -18.179 16.950 -1.619 -0.841 2.283  H7   VN8 37 
VN8 H8   H8  H  0 1 N N N 0.537  -14.766 16.698 -3.544 -1.934 1.286  H8   VN8 38 
VN8 H9   H9  H  0 1 N N N 0.209  -14.902 12.417 -6.438 0.525  -0.659 H9   VN8 39 
VN8 H10  H10 H  0 1 N N N 1.277  -18.436 14.607 -2.618 2.126  0.366  H10  VN8 40 
VN8 H11  H11 H  0 1 N N N 3.575  -15.330 23.352 0.521  -2.770 -2.024 H11  VN8 41 
VN8 H12  H12 H  0 1 N N N 4.057  -16.924 22.677 1.980  -2.373 -2.963 H12  VN8 42 
VN8 H13  H13 H  0 1 N N N 4.823  -15.419 22.063 2.093  -3.461 -1.558 H13  VN8 43 
VN8 H14  H14 H  0 1 N N N 1.139  -14.710 19.687 1.981  1.579  -2.182 H14  VN8 44 
VN8 H15  H15 H  0 1 N N N -0.733 -13.811 21.957 4.396  1.008  -2.409 H15  VN8 45 
VN8 H16  H16 H  0 1 N N N -1.382 -14.177 20.322 4.102  2.435  -1.386 H16  VN8 46 
VN8 H17  H17 H  0 1 N N N 0.125  -11.592 22.223 4.977  -1.154 -1.378 H17  VN8 47 
VN8 H18  H18 H  0 1 N N N 1.151  -9.553  21.311 6.148  -2.251 0.490  H18  VN8 48 
VN8 H19  H19 H  0 1 N N N 1.892  -9.443  18.950 6.524  -1.030 2.595  H19  VN8 49 
VN8 H20  H20 H  0 1 N N N 1.485  -11.402 17.472 5.733  1.290  2.830  H20  VN8 50 
VN8 H21  H21 H  0 1 N N N 0.315  -13.376 18.356 4.563  2.388  0.962  H21  VN8 51 
VN8 H22  H22 H  0 1 N N N 2.497  -18.173 19.189 0.696  -0.748 2.002  H22  VN8 52 
VN8 H23  H23 H  0 1 N N N 4.033  -17.171 20.392 2.335  -1.991 0.858  H23  VN8 53 
VN8 H24  H24 H  0 1 N N N 4.832  -15.429 19.141 0.309  -3.271 1.244  H24  VN8 54 
VN8 H25  H25 H  0 1 N N N 3.330  -14.462 19.327 0.505  -3.483 -0.527 H25  VN8 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VN8 CL19 C18 SING N N 1  
VN8 C17  C18 DOUB Y N 2  
VN8 C17  C15 SING Y N 3  
VN8 C18  C20 SING Y N 4  
VN8 CL16 C15 SING N N 5  
VN8 C15  C14 DOUB Y N 6  
VN8 C20  C13 DOUB Y N 7  
VN8 C14  C13 SING Y N 8  
VN8 C13  C12 SING N N 9  
VN8 C12  N11 SING N N 10 
VN8 C10  N11 SING N N 11 
VN8 C10  C9  SING N N 12 
VN8 N11  C5  SING N N 13 
VN8 C31  C32 DOUB Y N 14 
VN8 C31  C30 SING Y N 15 
VN8 C32  C27 SING Y N 16 
VN8 C9   C7  SING N N 17 
VN8 C30  C29 DOUB Y N 18 
VN8 C5   C7  SING N N 19 
VN8 C5   C3  SING N N 20 
VN8 C7   N21 SING N N 21 
VN8 C3   O4  DOUB N N 22 
VN8 C3   N2  SING N N 23 
VN8 C27  C26 SING N N 24 
VN8 C27  C28 DOUB Y N 25 
VN8 C25  N2  SING N N 26 
VN8 C25  C26 SING N N 27 
VN8 C25  C23 SING N N 28 
VN8 C29  C28 SING Y N 29 
VN8 N2   C1  SING N N 30 
VN8 N21  C23 SING N N 31 
VN8 N21  C22 SING N N 32 
VN8 C23  O24 DOUB N N 33 
VN8 C1   H1  SING N N 34 
VN8 C1   H2  SING N N 35 
VN8 C1   H3  SING N N 36 
VN8 C10  H4  SING N N 37 
VN8 C10  H5  SING N N 38 
VN8 C12  H6  SING N N 39 
VN8 C12  H7  SING N N 40 
VN8 C14  H8  SING N N 41 
VN8 C17  H9  SING N N 42 
VN8 C20  H10 SING N N 43 
VN8 C22  H11 SING N N 44 
VN8 C22  H12 SING N N 45 
VN8 C22  H13 SING N N 46 
VN8 C25  H14 SING N N 47 
VN8 C26  H15 SING N N 48 
VN8 C26  H16 SING N N 49 
VN8 C28  H17 SING N N 50 
VN8 C29  H18 SING N N 51 
VN8 C30  H19 SING N N 52 
VN8 C31  H20 SING N N 53 
VN8 C32  H21 SING N N 54 
VN8 C5   H22 SING N N 55 
VN8 C7   H23 SING N N 56 
VN8 C9   H24 SING N N 57 
VN8 C9   H25 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VN8 SMILES           ACDLabs              12.01 "Clc1cc(cc(Cl)c1)CN1CCC2N(C)C(=O)C(Cc3ccccc3)N(C)C(=O)C21"                                                                                                                       
VN8 InChI            InChI                1.06  "InChI=1S/C23H25Cl2N3O2/c1-26-19-8-9-28(14-16-10-17(24)13-18(25)11-16)21(19)23(30)27(2)20(22(26)29)12-15-6-4-3-5-7-15/h3-7,10-11,13,19-21H,8-9,12,14H2,1-2H3/t19-,20+,21+/m1/s1" 
VN8 InChIKey         InChI                1.06  MWJQVEWYXAWYBM-HKBOAZHASA-N                                                                                                                                                      
VN8 SMILES_CANONICAL CACTVS               3.385 "CN1[C@@H]2CCN(Cc3cc(Cl)cc(Cl)c3)[C@@H]2C(=O)N(C)[C@@H](Cc4ccccc4)C1=O"                                                                                                          
VN8 SMILES           CACTVS               3.385 "CN1[CH]2CCN(Cc3cc(Cl)cc(Cl)c3)[CH]2C(=O)N(C)[CH](Cc4ccccc4)C1=O"                                                                                                                
VN8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1[C@@H]2CCN([C@@H]2C(=O)N([C@H](C1=O)Cc3ccccc3)C)Cc4cc(cc(c4)Cl)Cl"                                                                                                           
VN8 SMILES           "OpenEye OEToolkits" 2.0.7 "CN1C2CCN(C2C(=O)N(C(C1=O)Cc3ccccc3)C)Cc4cc(cc(c4)Cl)Cl"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VN8 "SYSTEMATIC NAME" ACDLabs              12.01 "(3S,5aS,8aR)-3-benzyl-6-[(3,5-dichlorophenyl)methyl]-1,4-dimethyloctahydropyrrolo[3,2-e][1,4]diazepine-2,5-dione"                                                       
VN8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S},5~{a}~{S},8~{a}~{R})-6-[[3,5-bis(chloranyl)phenyl]methyl]-1,4-dimethyl-3-(phenylmethyl)-5~{a},7,8,8~{a}-tetrahydro-3~{H}-pyrrolo[3,2-e][1,4]diazepine-2,5-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VN8 "Create component" 2022-09-02 RCSB 
VN8 "Initial release"  2023-05-03 RCSB 
# 
