data_V58
# 
_chem_comp.id                                    V58 
_chem_comp.name                                  "phenyl 2-[[4-[4-(dimethylamino)piperidin-1-yl]-2-methoxy-phenyl]amino]-4-(1H-indol-3-yl)pyrimidine-5-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H34 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-14 
_chem_comp.pdbx_modified_date                    2023-04-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        562.661 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V58 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7OAB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V58 C10 C1  C 0 1 Y N N 41.746 -9.847  -2.851 -2.528 -0.471 0.089  C10 V58 1  
V58 N12 N1  N 0 1 Y N N 40.398 -11.701 -3.278 -0.228 -0.063 -0.124 N12 V58 2  
V58 C13 C2  C 0 1 Y N N 41.474 -12.417 -3.534 -0.418 1.186  0.286  C13 V58 3  
V58 C15 C3  C 0 1 Y N N 42.265 -14.873 -3.759 1.965  1.530  0.178  C15 V58 4  
V58 C17 C4  C 0 1 Y N N 44.467 -15.810 -4.047 3.494  -0.317 0.127  C17 V58 5  
V58 C20 C5  C 0 1 N N N 46.380 -17.788 -3.542 5.853  -1.411 -0.227 C20 V58 6  
V58 C21 C6  C 0 1 N N N 47.268 -18.991 -3.232 7.237  -1.946 -0.604 C21 V58 7  
V58 C22 C7  C 0 1 N N N 46.839 -20.279 -3.777 8.298  -1.250 0.252  C22 V58 8  
V58 C24 C8  C 0 1 N N N 47.035 -22.657 -3.369 10.679 -1.068 0.657  C24 V58 9  
V58 C26 C9  C 0 1 N N N 45.401 -20.505 -3.870 8.201  0.263  0.041  C26 V58 10 
V58 C28 C10 C 0 1 Y N N 42.725 -17.107 -3.019 4.271  1.898  -0.397 C28 V58 11 
V58 C02 C11 C 0 1 N N N 41.834 -8.381  -2.431 -3.680 -1.377 -0.019 C02 V58 12 
V58 C04 C12 C 0 1 Y N N 42.869 -6.683  -1.106 -4.585 -3.482 -0.301 C04 V58 13 
V58 C05 C13 C 0 1 Y N N 42.161 -6.209  -0.013 -5.477 -3.461 -1.365 C05 V58 14 
V58 C06 C14 C 0 1 Y N N 42.269 -4.875  0.350  -6.587 -4.283 -1.349 C06 V58 15 
V58 C07 C15 C 0 1 Y N N 43.084 -4.019  -0.373 -6.810 -5.126 -0.276 C07 V58 16 
V58 C08 C16 C 0 1 Y N N 43.795 -4.497  -1.463 -5.924 -5.147 0.785  C08 V58 17 
V58 C09 C17 C 0 1 Y N N 43.690 -5.830  -1.827 -4.812 -4.328 0.774  C09 V58 18 
V58 C11 C18 C 0 1 Y N N 40.490 -10.432 -2.940 -1.237 -0.907 -0.234 C11 V58 19 
V58 C16 C19 C 0 1 Y N N 43.576 -14.753 -4.202 2.220  0.176  0.335  C16 V58 20 
V58 C18 C20 C 0 1 Y N N 44.035 -16.987 -3.453 4.522  0.541  -0.239 C18 V58 21 
V58 C25 C21 C 0 1 N N N 48.817 -21.197 -2.742 9.729  -3.179 -0.052 C25 V58 22 
V58 C27 C22 C 0 1 N N N 44.537 -19.280 -4.160 6.790  0.734  0.399  C27 V58 23 
V58 C29 C23 C 0 1 Y N N 41.838 -16.053 -3.177 2.995  2.394  -0.189 C29 V58 24 
V58 C31 C24 C 0 1 N N N 40.084 -17.458 -2.432 3.850  4.548  -0.721 C31 V58 25 
V58 C33 C25 C 0 1 Y N N 42.875 -10.630 -3.114 -2.692 0.868  0.517  C33 V58 26 
V58 C34 C26 C 0 1 Y N N 44.325 -10.128 -3.079 -4.028 1.387  0.867  C34 V58 27 
V58 C35 C27 C 0 1 Y N N 44.792 -8.864  -3.420 -4.666 1.253  2.061  C35 V58 28 
V58 C37 C28 C 0 1 Y N N 46.543 -10.099 -2.869 -6.075 2.426  0.761  C37 V58 29 
V58 C38 C29 C 0 1 Y N N 45.453 -10.918 -2.742 -4.930 2.158  -0.007 C38 V58 30 
V58 C39 C30 C 0 1 Y N N 45.633 -12.263 -2.330 -4.847 2.615  -1.321 C39 V58 31 
V58 C40 C31 C 0 1 Y N N 46.909 -12.747 -2.054 -5.893 3.330  -1.861 C40 V58 32 
V58 C41 C32 C 0 1 Y N N 48.020 -11.912 -2.178 -7.025 3.596  -1.103 C41 V58 33 
V58 C42 C33 C 0 1 Y N N 47.845 -10.595 -2.584 -7.120 3.150  0.197  C42 V58 34 
V58 N14 N2  N 0 1 N N N 41.287 -13.806 -3.917 0.670  2.030  0.384  N14 V58 35 
V58 N19 N3  N 0 1 N N N 44.926 -18.122 -3.260 5.811  0.040  -0.448 N19 V58 36 
V58 N23 N4  N 0 1 N N N 47.374 -21.320 -2.897 9.633  -1.717 -0.146 N23 V58 37 
V58 N32 N5  N 0 1 Y N N 42.679 -11.889 -3.457 -1.618 1.650  0.599  N32 V58 38 
V58 N36 N6  N 0 1 Y N N 46.117 -8.864  -3.273 -5.879 1.864  2.005  N36 V58 39 
V58 O01 O1  O 0 1 N N N 41.108 -7.566  -2.899 -4.806 -0.953 0.160  O01 V58 40 
V58 O03 O2  O 0 1 N N N 42.777 -8.032  -1.459 -3.490 -2.678 -0.317 O03 V58 41 
V58 O30 O3  O 0 1 N N N 40.511 -16.158 -2.740 2.747  3.722  -0.343 O30 V58 42 
V58 H1  H1  H 0 1 N N N 45.488 -15.715 -4.387 3.690  -1.372 0.251  H1  V58 43 
V58 H2  H2  H 0 1 N N N 46.492 -17.518 -4.602 5.096  -1.895 -0.845 H2  V58 44 
V58 H3  H3  H 0 1 N N N 46.686 -16.939 -2.913 5.655  -1.625 0.823  H3  V58 45 
V58 H4  H4  H 0 1 N N N 47.322 -19.093 -2.138 7.273  -3.021 -0.426 H4  V58 46 
V58 H5  H5  H 0 1 N N N 48.271 -18.777 -3.631 7.429  -1.746 -1.658 H5  V58 47 
V58 H6  H6  H 0 1 N N N 47.281 -20.403 -4.777 8.129  -1.484 1.303  H6  V58 48 
V58 H7  H7  H 0 1 N N N 47.455 -23.406 -2.682 10.526 -1.303 1.710  H7  V58 49 
V58 H8  H8  H 0 1 N N N 45.941 -22.766 -3.407 11.657 -1.431 0.341  H8  V58 50 
V58 H9  H9  H 0 1 N N N 47.453 -22.808 -4.375 10.629 0.012  0.514  H9  V58 51 
V58 H10 H10 H 0 1 N N N 45.067 -20.931 -2.912 8.926  0.767  0.680  H10 V58 52 
V58 H11 H11 H 0 1 N N N 45.229 -21.234 -4.675 8.410  0.499  -1.003 H11 V58 53 
V58 H12 H12 H 0 1 N N N 42.393 -18.025 -2.556 5.071  2.566  -0.682 H12 V58 54 
V58 H13 H13 H 0 1 N N N 41.528 -6.876  0.554  -5.303 -2.803 -2.203 H13 V58 55 
V58 H14 H14 H 0 1 N N N 41.716 -4.502  1.199  -7.281 -4.267 -2.176 H14 V58 56 
V58 H15 H15 H 0 1 N N N 43.165 -2.981  -0.088 -7.679 -5.767 -0.266 H15 V58 57 
V58 H16 H16 H 0 1 N N N 44.430 -3.831  -2.028 -6.101 -5.806 1.623  H16 V58 58 
V58 H17 H17 H 0 1 N N N 44.248 -6.204  -2.673 -4.119 -4.345 1.603  H17 V58 59 
V58 H18 H18 H 0 1 N N N 39.601 -9.854  -2.735 -1.069 -1.920 -0.568 H18 V58 60 
V58 H19 H19 H 0 1 N N N 43.905 -13.836 -4.668 1.422  -0.494 0.619  H19 V58 61 
V58 H20 H20 H 0 1 N N N 49.184 -21.992 -2.077 8.989  -3.635 -0.710 H20 V58 62 
V58 H21 H21 H 0 1 N N N 49.301 -21.290 -3.726 10.727 -3.498 -0.352 H21 V58 63 
V58 H22 H22 H 0 1 N N N 49.057 -20.216 -2.307 9.542  -3.491 0.975  H22 V58 64 
V58 H23 H23 H 0 1 N N N 44.674 -18.982 -5.210 6.587  0.510  1.446  H23 V58 65 
V58 H24 H24 H 0 1 N N N 43.481 -19.534 -3.985 6.713  1.809  0.236  H24 V58 66 
V58 H25 H25 H 0 1 N N N 39.035 -17.431 -2.101 4.630  4.482  0.038  H25 V58 67 
V58 H26 H26 H 0 1 N N N 40.170 -18.094 -3.326 4.246  4.211  -1.679 H26 V58 68 
V58 H27 H27 H 0 1 N N N 40.712 -17.869 -1.628 3.516  5.582  -0.810 H27 V58 69 
V58 H28 H28 H 0 1 N N N 44.188 -8.030  -3.746 -4.269 0.738  2.923  H28 V58 70 
V58 H29 H29 H 0 1 N N N 44.777 -12.914 -2.230 -3.967 2.410  -1.912 H29 V58 71 
V58 H30 H30 H 0 1 N N N 47.039 -13.773 -1.743 -5.832 3.686  -2.878 H30 V58 72 
V58 H31 H31 H 0 1 N N N 49.009 -12.287 -1.960 -7.839 4.158  -1.537 H31 V58 73 
V58 H32 H32 H 0 1 N N N 48.702 -9.945  -2.684 -8.006 3.362  0.777  H32 V58 74 
V58 H33 H33 H 0 1 N N N 40.408 -14.051 -4.326 0.540  2.967  0.595  H33 V58 75 
V58 H35 H35 H 0 1 N N N 46.712 -8.077  -3.434 -6.515 1.901  2.736  H35 V58 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V58 C16 C17 DOUB Y N 1  
V58 C16 C15 SING Y N 2  
V58 C27 C26 SING N N 3  
V58 C27 N19 SING N N 4  
V58 C17 C18 SING Y N 5  
V58 N14 C15 SING N N 6  
V58 N14 C13 SING N N 7  
V58 C26 C22 SING N N 8  
V58 C22 C21 SING N N 9  
V58 C22 N23 SING N N 10 
V58 C15 C29 DOUB Y N 11 
V58 C20 N19 SING N N 12 
V58 C20 C21 SING N N 13 
V58 C13 N32 DOUB Y N 14 
V58 C13 N12 SING Y N 15 
V58 N32 C33 SING Y N 16 
V58 C18 N19 SING N N 17 
V58 C18 C28 DOUB Y N 18 
V58 C35 N36 SING Y N 19 
V58 C35 C34 DOUB Y N 20 
V58 C24 N23 SING N N 21 
V58 N12 C11 DOUB Y N 22 
V58 N36 C37 SING Y N 23 
V58 C29 C28 SING Y N 24 
V58 C29 O30 SING N N 25 
V58 C33 C34 SING N N 26 
V58 C33 C10 DOUB Y N 27 
V58 C34 C38 SING Y N 28 
V58 C11 C10 SING Y N 29 
V58 O01 C02 DOUB N N 30 
V58 N23 C25 SING N N 31 
V58 C37 C38 DOUB Y N 32 
V58 C37 C42 SING Y N 33 
V58 C10 C02 SING N N 34 
V58 C38 C39 SING Y N 35 
V58 O30 C31 SING N N 36 
V58 C42 C41 DOUB Y N 37 
V58 C02 O03 SING N N 38 
V58 C39 C40 DOUB Y N 39 
V58 C41 C40 SING Y N 40 
V58 C09 C08 DOUB Y N 41 
V58 C09 C04 SING Y N 42 
V58 C08 C07 SING Y N 43 
V58 O03 C04 SING N N 44 
V58 C04 C05 DOUB Y N 45 
V58 C07 C06 DOUB Y N 46 
V58 C05 C06 SING Y N 47 
V58 C17 H1  SING N N 48 
V58 C20 H2  SING N N 49 
V58 C20 H3  SING N N 50 
V58 C21 H4  SING N N 51 
V58 C21 H5  SING N N 52 
V58 C22 H6  SING N N 53 
V58 C24 H7  SING N N 54 
V58 C24 H8  SING N N 55 
V58 C24 H9  SING N N 56 
V58 C26 H10 SING N N 57 
V58 C26 H11 SING N N 58 
V58 C28 H12 SING N N 59 
V58 C05 H13 SING N N 60 
V58 C06 H14 SING N N 61 
V58 C07 H15 SING N N 62 
V58 C08 H16 SING N N 63 
V58 C09 H17 SING N N 64 
V58 C11 H18 SING N N 65 
V58 C16 H19 SING N N 66 
V58 C25 H20 SING N N 67 
V58 C25 H21 SING N N 68 
V58 C25 H22 SING N N 69 
V58 C27 H23 SING N N 70 
V58 C27 H24 SING N N 71 
V58 C31 H25 SING N N 72 
V58 C31 H26 SING N N 73 
V58 C31 H27 SING N N 74 
V58 C35 H28 SING N N 75 
V58 C39 H29 SING N N 76 
V58 C40 H30 SING N N 77 
V58 C41 H31 SING N N 78 
V58 C42 H32 SING N N 79 
V58 N14 H33 SING N N 80 
V58 N36 H35 SING N N 81 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V58 InChI            InChI                1.03  "InChI=1S/C33H34N6O3/c1-38(2)22-15-17-39(18-16-22)23-13-14-29(30(19-23)41-3)36-33-35-21-27(32(40)42-24-9-5-4-6-10-24)31(37-33)26-20-34-28-12-8-7-11-25(26)28/h4-14,19-22,34H,15-18H2,1-3H3,(H,35,36,37)" 
V58 InChIKey         InChI                1.03  PTQTXSUYGYJJKM-UHFFFAOYSA-N                                                                                                                                                                              
V58 SMILES_CANONICAL CACTVS               3.385 "COc1cc(ccc1Nc2ncc(C(=O)Oc3ccccc3)c(n2)c4c[nH]c5ccccc45)N6CCC(CC6)N(C)C"                                                                                                                                 
V58 SMILES           CACTVS               3.385 "COc1cc(ccc1Nc2ncc(C(=O)Oc3ccccc3)c(n2)c4c[nH]c5ccccc45)N6CCC(CC6)N(C)C"                                                                                                                                 
V58 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C1CCN(CC1)c2ccc(c(c2)OC)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)C(=O)Oc6ccccc6"                                                                                                                               
V58 SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C1CCN(CC1)c2ccc(c(c2)OC)Nc3ncc(c(n3)c4c[nH]c5c4cccc5)C(=O)Oc6ccccc6"                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           V58 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "phenyl 2-[[4-[4-(dimethylamino)piperidin-1-yl]-2-methoxy-phenyl]amino]-4-(1~{H}-indol-3-yl)pyrimidine-5-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V58 "Create component" 2021-04-14 PDBE 
V58 "Initial release"  2023-05-03 RCSB 
# 
