data_U38
# 
_chem_comp.id                                    U38 
_chem_comp.name                                  Estradiol-17beta-glucuronide 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H32 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-05-12 
_chem_comp.pdbx_modified_date                    2023-06-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        448.506 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U38 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8HW2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U38 C1  C1  C 0 1 N N S 133.645 139.110 137.897 4.924  0.603  0.518  C01 U38 1  
U38 C2  C2  C 0 1 N N S 133.269 138.999 136.421 5.814  -0.442 -0.160 C02 U38 2  
U38 C3  C3  C 0 1 N N S 134.386 139.581 135.557 5.188  -1.828 0.019  C03 U38 3  
U38 C4  C4  C 0 1 N N R 135.652 138.806 135.927 3.768  -1.812 -0.555 C04 U38 4  
U38 C5  C5  C 0 1 N N R 135.858 138.739 137.441 2.957  -0.715 0.138  C05 U38 5  
U38 C6  C6  C 0 1 N N N 132.427 138.776 138.758 5.503  1.977  0.296  C06 U38 6  
U38 C7  C7  C 0 1 Y N N 139.674 137.676 144.208 -5.570 -1.415 0.809  C07 U38 7  
U38 C8  C8  C 0 1 Y N N 140.655 137.936 144.990 -6.911 -1.608 0.556  C08 U38 8  
U38 C9  C9  C 0 1 Y N N 141.628 137.243 145.040 -7.642 -0.610 -0.073 C09 U38 9  
U38 C10 C10 C 0 1 Y N N 141.844 136.180 144.356 -7.017 0.567  -0.444 C10 U38 10 
U38 C11 C11 C 0 1 Y N N 140.789 135.615 143.290 -5.666 0.761  -0.191 C11 U38 11 
U38 C12 C12 C 0 1 N N N 140.913 134.479 142.506 -5.051 2.062  -0.635 C12 U38 12 
U38 C13 C13 C 0 1 N N N 140.254 134.472 141.137 -3.687 2.283  0.018  C13 U38 13 
U38 C14 C14 C 0 1 N N R 139.403 135.738 140.928 -2.865 1.006  -0.147 C14 U38 14 
U38 C15 C15 C 0 1 N N S 138.333 135.591 139.997 -1.434 1.191  0.308  C15 U38 15 
U38 C16 C16 C 0 1 N N N 138.786 135.265 138.537 -0.600 2.226  -0.438 C16 U38 16 
U38 C17 C17 C 0 1 N N N 137.764 135.819 137.554 0.842  1.662  -0.448 C17 U38 17 
U38 C18 C18 C 0 1 N N S 136.985 136.906 138.440 0.770  0.262  0.221  C18 U38 18 
U38 C19 C19 C 0 1 N N S 137.749 137.019 139.737 -0.694 -0.145 0.015  C19 U38 19 
U38 C20 C20 C 0 1 N N N 136.933 137.456 140.805 -1.233 -1.196 0.967  C20 U38 20 
U38 C21 C21 C 0 1 N N N 137.681 137.296 142.054 -2.726 -1.395 0.645  C21 U38 21 
U38 C22 C22 C 0 1 N N S 138.645 136.091 142.381 -3.484 -0.072 0.752  C22 U38 22 
U38 C23 C23 C 0 1 Y N N 139.675 136.399 143.240 -4.945 -0.229 0.446  C23 U38 23 
U38 C24 C24 C 0 1 N N N 138.935 137.979 139.612 -0.926 -0.565 -1.437 C24 U38 24 
U38 O1  O1  O 0 1 N N N 134.735 138.260 138.131 3.611  0.544  -0.041 O01 U38 25 
U38 O2  O2  O 0 1 N N N 131.689 137.803 138.454 4.896  2.789  -0.360 O02 U38 26 
U38 O3  O3  O 0 1 N N N 132.162 139.476 139.771 6.694  2.297  0.826  O03 U38 27 
U38 O4  O4  O 0 1 N N N 137.070 138.089 137.757 1.648  -0.657 -0.432 O04 U38 28 
U38 O5  O5  O 0 1 N N N 142.633 137.631 145.934 -8.966 -0.789 -0.323 O05 U38 29 
U38 O6  O6  O 0 1 N N N 136.766 139.421 135.331 3.147  -3.080 -0.329 O06 U38 30 
U38 O7  O7  O 0 1 N N N 134.088 139.365 134.206 5.973  -2.801 -0.673 O07 U38 31 
U38 O8  O8  O 0 1 N N N 132.089 139.706 136.190 7.113  -0.423 0.437  O08 U38 32 
U38 H1  H1  H 0 1 N N N 133.933 140.152 138.100 4.874  0.399  1.588  H1  U38 33 
U38 H2  H2  H 0 1 N N N 133.141 137.936 136.167 5.898  -0.214 -1.222 H2  U38 34 
U38 H3  H3  H 0 1 N N N 134.519 140.649 135.783 5.149  -2.077 1.080  H3  U38 35 
U38 H4  H4  H 0 1 N N N 135.547 137.778 135.550 3.810  -1.613 -1.626 H4  U38 36 
U38 H5  H5  H 0 1 N N N 135.985 139.786 137.753 2.881  -0.936 1.203  H5  U38 37 
U38 H6  H6  H 0 1 N N N 138.820 138.338 144.201 -5.001 -2.191 1.298  H6  U38 38 
U38 H7  H7  H 0 1 N N N 140.601 138.809 145.624 -7.390 -2.532 0.845  H7  U38 39 
U38 H8  H8  H 0 1 N N N 142.771 135.646 144.504 -7.586 1.343  -0.935 H8  U38 40 
U38 H9  H9  H 0 1 N N N 140.486 133.641 143.077 -4.930 2.048  -1.718 H9  U38 41 
U38 H10 H10 H 0 1 N N N 141.988 134.307 142.351 -5.714 2.882  -0.361 H10 U38 42 
U38 H11 H11 H 0 1 N N N 139.607 133.586 141.054 -3.177 3.114  -0.469 H11 U38 43 
U38 H12 H12 H 0 1 N N N 141.034 134.431 140.362 -3.818 2.503  1.078  H12 U38 44 
U38 H13 H13 H 0 1 N N N 140.053 136.586 140.665 -2.896 0.680  -1.187 H13 U38 45 
U38 H14 H14 H 0 1 N N N 137.551 134.896 140.336 -1.411 1.399  1.378  H14 U38 46 
U38 H15 H15 H 0 1 N N N 138.862 134.175 138.411 -0.967 2.342  -1.458 H15 U38 47 
U38 H16 H16 H 0 1 N N N 139.766 135.726 138.346 -0.630 3.182  0.084  H16 U38 48 
U38 H17 H17 H 0 1 N N N 137.082 135.030 137.202 1.198  1.568  -1.474 H17 U38 49 
U38 H18 H18 H 0 1 N N N 138.257 136.289 136.691 1.505  2.314  0.120  H18 U38 50 
U38 H19 H19 H 0 1 N N N 135.951 136.574 138.615 1.002  0.330  1.284  H19 U38 51 
U38 H20 H20 H 0 1 N N N 136.670 138.515 140.662 -0.695 -2.133 0.824  H20 U38 52 
U38 H21 H21 H 0 1 N N N 136.015 136.852 140.842 -1.119 -0.856 1.996  H21 U38 53 
U38 H22 H22 H 0 1 N N N 138.301 138.200 142.143 -2.826 -1.778 -0.371 H22 U38 54 
U38 H23 H23 H 0 1 N N N 136.923 137.291 142.851 -3.150 -2.117 1.343  H23 U38 55 
U38 H24 H24 H 0 1 N N N 138.061 135.215 142.700 -3.410 0.270  1.784  H24 U38 56 
U38 H25 H25 H 0 1 N N N 139.465 138.035 140.574 -0.302 -1.428 -1.670 H25 U38 57 
U38 H26 H26 H 0 1 N N N 139.622 137.613 138.835 -1.975 -0.827 -1.577 H26 U38 58 
U38 H27 H27 H 0 1 N N N 138.569 138.979 139.336 -0.667 0.260  -2.100 H27 U38 59 
U38 H28 H28 H 0 1 N N N 131.380 139.140 140.193 7.024  3.190  0.656  H28 U38 60 
U38 H29 H29 H 0 1 N N N 142.368 138.425 146.383 -9.545 -0.489 0.391  H29 U38 61 
U38 H30 H30 H 0 1 N N N 137.553 138.941 135.560 2.243  -3.141 -0.668 H30 U38 62 
U38 H31 H31 H 0 1 N N N 133.302 139.845 133.974 6.885  -2.865 -0.360 H31 U38 63 
U38 H32 H32 H 0 1 N N N 131.424 139.422 136.806 7.567  0.428  0.364  H32 U38 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U38 O7  C3  SING N N 1  
U38 O6  C4  SING N N 2  
U38 C3  C4  SING N N 3  
U38 C3  C2  SING N N 4  
U38 C4  C5  SING N N 5  
U38 O8  C2  SING N N 6  
U38 C2  C1  SING N N 7  
U38 C5  O4  SING N N 8  
U38 C5  O1  SING N N 9  
U38 C17 C18 SING N N 10 
U38 C17 C16 SING N N 11 
U38 O4  C18 SING N N 12 
U38 C1  O1  SING N N 13 
U38 C1  C6  SING N N 14 
U38 C18 C19 SING N N 15 
U38 O2  C6  DOUB N N 16 
U38 C16 C15 SING N N 17 
U38 C6  O3  SING N N 18 
U38 C24 C19 SING N N 19 
U38 C19 C15 SING N N 20 
U38 C19 C20 SING N N 21 
U38 C15 C14 SING N N 22 
U38 C20 C21 SING N N 23 
U38 C14 C13 SING N N 24 
U38 C14 C22 SING N N 25 
U38 C13 C12 SING N N 26 
U38 C21 C22 SING N N 27 
U38 C22 C23 SING N N 28 
U38 C12 C11 SING N N 29 
U38 C23 C11 DOUB Y N 30 
U38 C23 C7  SING Y N 31 
U38 C11 C10 SING Y N 32 
U38 C7  C8  DOUB Y N 33 
U38 C10 C9  DOUB Y N 34 
U38 C8  C9  SING Y N 35 
U38 C9  O5  SING N N 36 
U38 C1  H1  SING N N 37 
U38 C2  H2  SING N N 38 
U38 C3  H3  SING N N 39 
U38 C4  H4  SING N N 40 
U38 C5  H5  SING N N 41 
U38 C7  H6  SING N N 42 
U38 C8  H7  SING N N 43 
U38 C10 H8  SING N N 44 
U38 C12 H9  SING N N 45 
U38 C12 H10 SING N N 46 
U38 C13 H11 SING N N 47 
U38 C13 H12 SING N N 48 
U38 C14 H13 SING N N 49 
U38 C15 H14 SING N N 50 
U38 C16 H15 SING N N 51 
U38 C16 H16 SING N N 52 
U38 C17 H17 SING N N 53 
U38 C17 H18 SING N N 54 
U38 C18 H19 SING N N 55 
U38 C20 H20 SING N N 56 
U38 C20 H21 SING N N 57 
U38 C21 H22 SING N N 58 
U38 C21 H23 SING N N 59 
U38 C22 H24 SING N N 60 
U38 C24 H25 SING N N 61 
U38 C24 H26 SING N N 62 
U38 C24 H27 SING N N 63 
U38 O3  H28 SING N N 64 
U38 O5  H29 SING N N 65 
U38 O6  H30 SING N N 66 
U38 O7  H31 SING N N 67 
U38 O8  H32 SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U38 InChI            InChI                1.06  "InChI=1S/C24H32O8/c1-24-9-8-14-13-5-3-12(25)10-11(13)2-4-15(14)16(24)6-7-17(24)31-23-20(28)18(26)19(27)21(32-23)22(29)30/h3,5,10,14-21,23,25-28H,2,4,6-9H2,1H3,(H,29,30)/t14-,15-,16+,17+,18+,19+,20-,21+,23-,24+/m1/s1" 
U38 InChIKey         InChI                1.06  MTKNDAQYHASLID-QXYWQCSFSA-N                                                                                                                                                                                               
U38 SMILES_CANONICAL CACTVS               3.385 "C[C@]12CC[C@H]3[C@@H](CCc4cc(O)ccc34)[C@@H]1CC[C@@H]2O[C@@H]5O[C@@H]([C@@H](O)[C@H](O)[C@H]5O)C(O)=O"                                                                                                                    
U38 SMILES           CACTVS               3.385 "C[C]12CC[CH]3[CH](CCc4cc(O)ccc34)[CH]1CC[CH]2O[CH]5O[CH]([CH](O)[CH](O)[CH]5O)C(O)=O"                                                                                                                                    
U38 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CC[C@@H]2O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)C(=O)O)O)O)O)O"                                                                                                                     
U38 SMILES           "OpenEye OEToolkits" 2.0.7 "CC12CCC3c4ccc(cc4CCC3C1CCC2OC5C(C(C(C(O5)C(=O)O)O)O)O)O"                                                                                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           U38 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S},3~{S},4~{S},5~{R},6~{R})-6-[[(8~{R},9~{S},13~{S},14~{S},17~{S})-13-methyl-3-oxidanyl-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-17-yl]oxy]-3,4,5-tris(oxidanyl)oxane-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U38 "Create component" 2023-05-12 PDBJ 
U38 "Initial release"  2023-06-07 RCSB 
# 
