data_U08
# 
_chem_comp.id                                    U08 
_chem_comp.name                                  "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H13 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Remdesivir, reacted form" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-01-15 
_chem_comp.pdbx_modified_date                    2022-07-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        291.263 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U08 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7BF6 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U08 C8  C1  C 0 1 N N N 16.883 -1.955 3.526  -0.932 -0.472 -1.708 C8  U08 1  
U08 C5  C2  C 0 1 Y N N 18.887 -2.162 4.769  0.588  -0.668 0.198  C5  U08 2  
U08 C6  C3  C 0 1 N N N 20.240 -3.520 0.780  -3.306 1.897  1.131  C6  U08 3  
U08 N1  N1  N 0 1 Y N N 18.655 -3.164 5.658  1.656  0.091  -0.110 N1  U08 4  
U08 C2  C4  C 0 1 N N R 18.932 -1.001 2.486  -1.795 -1.412 0.416  C2  U08 5  
U08 N3  N2  N 0 1 N N N 15.760 -1.801 3.614  -1.012 -0.527 -2.839 N3  U08 6  
U08 C4  C5  C 0 1 N N R 18.873 -3.013 1.215  -2.713 0.834  0.204  C4  U08 7  
U08 O2  O1  O 0 1 N N N 18.266 0.199  2.760  -2.096 -2.477 -0.489 O2  U08 8  
U08 N2  N3  N 0 1 Y N N 17.879 -4.269 5.407  1.816  1.261  -0.865 N2  U08 9  
U08 O4  O2  O 0 1 N N N 20.562 -3.164 -0.570 -3.007 3.197  0.617  O4  U08 10 
U08 N4  N4  N 0 1 Y N N 18.444 -4.975 7.639  4.086  1.266  -0.442 N4  U08 11 
U08 C7  C6  C 0 1 Y N N 19.733 -1.271 5.392  0.990  -1.710 0.973  C7  U08 12 
U08 C1  C7  C 0 1 N N R 18.341 -2.106 3.366  -0.829 -0.401 -0.241 C1  U08 13 
U08 C10 C8  C 0 1 Y N N 20.013 -1.748 6.671  2.369  -1.599 1.158  C10 U08 14 
U08 C11 C9  C 0 1 Y N N 19.205 -3.887 7.861  4.025  0.165  0.287  C11 U08 15 
U08 C12 C10 C 0 1 Y N N 17.858 -5.111 6.441  2.999  1.795  -1.001 C12 U08 16 
U08 C3  C11 C 0 1 N N S 18.698 -1.503 1.080  -3.062 -0.581 0.715  C3  U08 17 
U08 C9  C12 C 0 1 Y N N 19.336 -2.941 6.832  2.775  -0.468 0.477  C9  U08 18 
U08 N5  N5  N 0 1 N N N 19.784 -3.743 9.056  5.168  -0.361 0.855  N5  U08 19 
U08 O1  O3  O 0 1 N N N 18.647 -3.315 2.630  -1.270 0.890  0.232  O1  U08 20 
U08 O3  O4  O 0 1 N N N 17.396 -1.197 0.616  -4.185 -1.107 0.004  O3  U08 21 
U08 H1  H1  H 0 1 N N N 20.252 -4.617 0.866  -4.386 1.768  1.187  H1  U08 22 
U08 H2  H2  H 0 1 N N N 21.002 -3.092 1.447  -2.875 1.792  2.126  H2  U08 23 
U08 H3  H3  H 0 1 N N N 20.012 -0.916 2.677  -1.367 -1.806 1.338  H3  U08 24 
U08 H4  H4  H 0 1 N N N 18.103 -3.511 0.607  -3.078 0.973  -0.814 H4  U08 25 
U08 H5  H5  H 0 1 N N N 18.448 0.466  3.653  -2.699 -3.141 -0.127 H5  U08 26 
U08 H6  H6  H 0 1 N N N 21.422 -3.503 -0.791 -3.353 3.921  1.156  H6  U08 27 
U08 H7  H7  H 0 1 N N N 20.115 -0.357 4.962  0.355  -2.486 1.374  H7  U08 28 
U08 H8  H8  H 0 1 N N N 20.646 -1.271 7.405  2.998  -2.269 1.726  H8  U08 29 
U08 H9  H9  H 0 1 N N N 17.296 -6.021 6.294  3.099  2.696  -1.587 H9  U08 30 
U08 H10 H10 H 0 1 N N N 19.468 -1.100 0.406  -3.262 -0.562 1.786  H10 U08 31 
U08 H11 H11 H 0 1 N N N 19.545 -4.520 9.639  6.022  0.077  0.721  H11 U08 32 
U08 H12 H12 H 0 1 N N N 20.777 -3.705 8.943  5.116  -1.170 1.389  H12 U08 33 
U08 H13 H13 H 0 1 N N N 17.301 -0.255 0.537  -4.995 -0.588 0.108  H13 U08 34 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U08 O4  C6  SING N N 1  
U08 O3  C3  SING N N 2  
U08 C6  C4  SING N N 3  
U08 C3  C4  SING N N 4  
U08 C3  C2  SING N N 5  
U08 C4  O1  SING N N 6  
U08 C2  O2  SING N N 7  
U08 C2  C1  SING N N 8  
U08 O1  C1  SING N N 9  
U08 C1  C8  SING N N 10 
U08 C1  C5  SING N N 11 
U08 C8  N3  TRIP N N 12 
U08 C5  C7  DOUB Y N 13 
U08 C5  N1  SING Y N 14 
U08 C7  C10 SING Y N 15 
U08 N2  N1  SING Y N 16 
U08 N2  C12 DOUB Y N 17 
U08 N1  C9  SING Y N 18 
U08 C12 N4  SING Y N 19 
U08 C10 C9  DOUB Y N 20 
U08 C9  C11 SING Y N 21 
U08 N4  C11 DOUB Y N 22 
U08 C11 N5  SING N N 23 
U08 C6  H1  SING N N 24 
U08 C6  H2  SING N N 25 
U08 C2  H3  SING N N 26 
U08 C4  H4  SING N N 27 
U08 O2  H5  SING N N 28 
U08 O4  H6  SING N N 29 
U08 C7  H7  SING N N 30 
U08 C10 H8  SING N N 31 
U08 C12 H9  SING N N 32 
U08 C3  H10 SING N N 33 
U08 N5  H11 SING N N 34 
U08 N5  H12 SING N N 35 
U08 O3  H13 SING N N 36 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U08 InChI            InChI                1.03  "InChI=1S/C12H13N5O4/c13-4-12(10(20)9(19)7(3-18)21-12)8-2-1-6-11(14)15-5-16-17(6)8/h1-2,5,7,9-10,18-20H,3H2,(H2,14,15,16)/t7-,9-,10-,12+/m1/s1" 
U08 InChIKey         InChI                1.03  BRDWIEOJOWJCLU-LTGWCKQJSA-N                                                                                                                     
U08 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnn2c1ccc2[C@@]3(O[C@H](CO)[C@@H](O)[C@H]3O)C#N"                                                                                           
U08 SMILES           CACTVS               3.385 "Nc1ncnn2c1ccc2[C]3(O[CH](CO)[CH](O)[CH]3O)C#N"                                                                                                 
U08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)[C@]3([C@@H]([C@@H]([C@H](O3)CO)O)O)C#N"                                                                                     
U08 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(n2c1c(ncn2)N)C3(C(C(C(O3)CO)O)O)C#N"                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           U08 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,1-f][1,2,4]triazin-7-yl)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolane-2-carbonitrile" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U08 "Create component" 2021-01-15 PDBE 
U08 "Initial release"  2021-01-27 RCSB 
U08 "Modify synonyms"  2022-07-20 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      U08 
_pdbx_chem_comp_synonyms.name         "Remdesivir, reacted form" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
