data_SI8
# 
_chem_comp.id                                    SI8 
_chem_comp.name                                  "[N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](hydrogen peroxido-kappaO)copper" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H37 Cu N6 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-07-06 
_chem_comp.pdbx_modified_date                    2017-11-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        593.221 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SI8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5WBA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SI8 CU1 CU1 CU 0 0 N N N 24.358 25.285 -17.656 24.358 25.285 -17.656 CU1 SI8 1  
SI8 N6  N1  N  0 1 Y N N 22.918 26.180 -18.682 22.918 26.180 -18.682 N6  SI8 2  
SI8 C23 C1  C  0 1 Y N N 22.823 25.980 -20.086 22.823 25.980 -20.086 C23 SI8 3  
SI8 C24 C2  C  0 1 Y N N 21.814 26.614 -20.806 21.814 26.614 -20.806 C24 SI8 4  
SI8 C25 C3  C  0 1 Y N N 20.899 27.445 -20.153 20.899 27.445 -20.153 C25 SI8 5  
SI8 C26 C4  C  0 1 Y N N 20.984 27.659 -18.773 20.984 27.659 -18.773 C26 SI8 6  
SI8 C22 C5  C  0 1 Y N N 21.990 27.039 -18.026 21.990 27.039 -18.026 C22 SI8 7  
SI8 C21 C6  C  0 1 N N N 22.070 27.245 -16.529 22.070 27.245 -16.529 C21 SI8 8  
SI8 C20 C7  C  0 1 N N N 23.492 27.001 -16.043 23.492 27.001 -16.043 C20 SI8 9  
SI8 N4  N2  N  0 1 N N N 23.727 25.580 -15.774 23.727 25.580 -15.774 N4  SI8 10 
SI8 N5  N3  N  0 1 Y N N 26.049 24.381 -17.114 26.049 24.381 -17.114 N5  SI8 11 
SI8 C16 C8  C  0 1 Y N N 26.679 23.451 -17.987 26.679 23.451 -17.987 C16 SI8 12 
SI8 C17 C9  C  0 1 Y N N 27.865 22.823 -17.594 27.865 22.823 -17.594 C17 SI8 13 
SI8 C18 C10 C  0 1 Y N N 28.436 23.104 -16.346 28.436 23.104 -16.346 C18 SI8 14 
SI8 C19 C11 C  0 1 Y N N 27.828 24.015 -15.480 27.828 24.015 -15.480 C19 SI8 15 
SI8 C15 C12 C  0 1 Y N N 26.648 24.662 -15.854 26.648 24.662 -15.854 C15 SI8 16 
SI8 C14 C13 C  0 1 N N N 25.990 25.625 -14.917 25.990 25.625 -14.917 C14 SI8 17 
SI8 C13 C14 C  0 1 N N N 24.527 25.459 -14.585 24.527 25.459 -14.585 C13 SI8 18 
SI8 C12 C15 C  0 1 N N N 22.474 24.847 -15.593 22.474 24.847 -15.593 C12 SI8 19 
SI8 C11 C16 C  0 1 N N N 22.028 24.842 -14.123 22.028 24.842 -14.123 C11 SI8 20 
SI8 N3  N4  N  0 1 N N N 20.857 24.010 -13.960 20.857 24.010 -13.960 N3  SI8 21 
SI8 C10 C17 C  0 1 N N N 19.718 24.726 -14.180 19.718 24.726 -14.180 C10 SI8 22 
SI8 O2  O1  O  0 1 N N N 19.746 25.890 -14.937 19.746 25.890 -14.937 O2  SI8 23 
SI8 C9  C18 C  0 1 N N N 18.387 24.191 -13.677 18.387 24.191 -13.677 C9  SI8 24 
SI8 C8  C19 C  0 1 N N N 17.553 25.336 -13.090 17.553 25.336 -13.090 C8  SI8 25 
SI8 C7  C20 C  0 1 N N N 18.251 25.928 -11.861 18.251 25.928 -11.861 C7  SI8 26 
SI8 C6  C21 C  0 1 N N N 17.382 27.027 -11.251 17.382 27.027 -11.251 C6  SI8 27 
SI8 C5  C22 C  0 1 N N S 18.111 27.672 -10.061 18.111 27.672 -10.061 C5  SI8 28 
SI8 C4  C23 C  0 1 N N S 17.438 28.984 -9.694  17.438 28.984 -9.694  C4  SI8 29 
SI8 N2  N5  N  0 1 N N N 15.985 29.064 -9.689  15.985 29.064 -9.689  N2  SI8 30 
SI8 S1  S1  S  0 1 N N N 17.885 26.688 -8.571  17.885 26.688 -8.571  S1  SI8 31 
SI8 C3  C24 C  0 1 N N N 18.612 28.061 -7.679  18.612 28.061 -7.679  C3  SI8 32 
SI8 C2  C25 C  0 1 N N R 17.740 29.224 -8.138  17.740 29.224 -8.138  C2  SI8 33 
SI8 N1  N6  N  0 1 N N N 16.447 29.415 -7.540  16.447 29.415 -7.540  N1  SI8 34 
SI8 C1  C26 C  0 1 N N N 15.509 29.326 -8.477  15.509 29.326 -8.477  C1  SI8 35 
SI8 O1  O2  O  0 1 N N N 14.176 29.360 -8.202  14.176 29.360 -8.202  O1  SI8 36 
SI8 O3  O3  O  0 1 N N N 23.618 23.600 -18.252 23.618 23.600 -18.252 O3  SI8 37 
SI8 O4  O4  O  0 1 N N N 22.308 22.790 -18.355 22.308 22.790 -18.355 O4  SI8 38 
SI8 H1  H1  H  0 1 N N N 23.530 25.339 -20.592 23.530 25.339 -20.592 H1  SI8 39 
SI8 H2  H2  H  0 1 N N N 21.738 26.463 -21.873 21.738 26.463 -21.873 H2  SI8 40 
SI8 H3  H3  H  0 1 N N N 20.117 27.928 -20.721 20.117 27.928 -20.721 H3  SI8 41 
SI8 H4  H4  H  0 1 N N N 20.270 28.305 -18.283 20.270 28.305 -18.283 H4  SI8 42 
SI8 H5  H5  H  0 1 N N N 21.775 28.277 -16.287 21.775 28.277 -16.287 H5  SI8 43 
SI8 H6  H6  H  0 1 N N N 21.388 26.542 -16.028 21.389 26.542 -16.028 H6  SI8 44 
SI8 H7  H7  H  0 1 N N N 24.198 27.341 -16.815 24.198 27.341 -16.815 H7  SI8 45 
SI8 H8  H8  H  0 1 N N N 23.657 27.573 -15.118 23.657 27.573 -15.118 H8  SI8 46 
SI8 H9  H9  H  0 1 N N N 26.243 23.231 -18.950 26.243 23.231 -18.950 H9  SI8 47 
SI8 H10 H10 H  0 1 N N N 28.344 22.117 -18.257 28.344 22.117 -18.257 H10 SI8 48 
SI8 H11 H11 H  0 1 N N N 29.352 22.613 -16.052 29.352 22.613 -16.052 H11 SI8 49 
SI8 H12 H12 H  0 1 N N N 28.272 24.220 -14.517 28.272 24.220 -14.517 H12 SI8 50 
SI8 H13 H13 H  0 1 N N N 26.541 25.574 -13.967 26.541 25.573 -13.967 H13 SI8 51 
SI8 H14 H14 H  0 1 N N N 26.107 26.627 -15.355 26.107 26.627 -15.355 H14 SI8 52 
SI8 H15 H15 H  0 1 N N N 24.228 26.236 -13.866 24.228 26.236 -13.866 H15 SI8 53 
SI8 H16 H16 H  0 1 N N N 24.367 24.466 -14.140 24.367 24.466 -14.140 H16 SI8 54 
SI8 H17 H17 H  0 1 N N N 21.691 25.323 -16.202 21.691 25.323 -16.202 H17 SI8 55 
SI8 H18 H18 H  0 1 N N N 22.617 23.808 -15.926 22.617 23.808 -15.926 H18 SI8 56 
SI8 H19 H19 H  0 1 N N N 22.843 24.449 -13.497 22.843 24.449 -13.497 H19 SI8 57 
SI8 H20 H20 H  0 1 N N N 21.790 25.870 -13.812 21.790 25.870 -13.812 H20 SI8 58 
SI8 H21 H21 H  0 1 N N N 20.879 23.040 -13.718 20.879 23.040 -13.718 H21 SI8 59 
SI8 H22 H22 H  0 1 N N N 17.839 23.732 -14.513 17.839 23.732 -14.513 H22 SI8 60 
SI8 H23 H23 H  0 1 N N N 18.568 23.435 -12.898 18.568 23.435 -12.898 H23 SI8 61 
SI8 H24 H24 H  0 1 N N N 17.429 26.121 -13.850 17.429 26.121 -13.850 H24 SI8 62 
SI8 H25 H25 H  0 1 N N N 16.565 24.951 -12.796 16.565 24.951 -12.796 H25 SI8 63 
SI8 H26 H26 H  0 1 N N N 18.413 25.135 -11.116 18.413 25.135 -11.116 H26 SI8 64 
SI8 H27 H27 H  0 1 N N N 19.220 26.353 -12.161 19.220 26.353 -12.161 H27 SI8 65 
SI8 H28 H28 H  0 1 N N N 17.177 27.794 -12.012 17.177 27.794 -12.012 H28 SI8 66 
SI8 H29 H29 H  0 1 N N N 16.433 26.591 -10.905 16.433 26.591 -10.905 H29 SI8 67 
SI8 H30 H30 H  0 1 N N N 19.188 27.790 -10.248 19.188 27.790 -10.248 H30 SI8 68 
SI8 H31 H31 H  0 1 N N N 17.876 29.809 -10.275 17.876 29.809 -10.275 H31 SI8 69 
SI8 H32 H32 H  0 1 N N N 15.414 28.937 -10.500 15.414 28.937 -10.500 H32 SI8 70 
SI8 H33 H33 H  0 1 N N N 18.544 27.914 -6.591  18.544 27.914 -6.591  H33 SI8 71 
SI8 H34 H34 H  0 1 N N N 19.664 28.212 -7.963  19.664 28.212 -7.963  H34 SI8 72 
SI8 H35 H35 H  0 1 N N N 18.325 30.151 -8.054  18.325 30.152 -8.054  H35 SI8 73 
SI8 H36 H36 H  0 1 N N N 16.279 29.588 -6.569  16.279 29.588 -6.569  H36 SI8 74 
SI8 H37 H37 H  0 1 N N N 22.486 21.948 -18.758 22.486 21.948 -18.758 H37 SI8 75 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SI8 C24 C25 DOUB Y N 1  
SI8 C24 C23 SING Y N 2  
SI8 C25 C26 SING Y N 3  
SI8 C23 N6  DOUB Y N 4  
SI8 C26 C22 DOUB Y N 5  
SI8 N6  C22 SING Y N 6  
SI8 N6  CU1 SING N N 7  
SI8 O4  O3  SING N N 8  
SI8 O3  CU1 SING N N 9  
SI8 C22 C21 SING N N 10 
SI8 C16 C17 DOUB Y N 11 
SI8 C16 N5  SING Y N 12 
SI8 CU1 N5  SING N N 13 
SI8 CU1 N4  SING N N 14 
SI8 C17 C18 SING Y N 15 
SI8 N5  C15 DOUB Y N 16 
SI8 C21 C20 SING N N 17 
SI8 C18 C19 DOUB Y N 18 
SI8 C20 N4  SING N N 19 
SI8 C15 C19 SING Y N 20 
SI8 C15 C14 SING N N 21 
SI8 N4  C12 SING N N 22 
SI8 N4  C13 SING N N 23 
SI8 C12 C11 SING N N 24 
SI8 O2  C10 DOUB N N 25 
SI8 C14 C13 SING N N 26 
SI8 C10 N3  SING N N 27 
SI8 C10 C9  SING N N 28 
SI8 C11 N3  SING N N 29 
SI8 C9  C8  SING N N 30 
SI8 C8  C7  SING N N 31 
SI8 C7  C6  SING N N 32 
SI8 C6  C5  SING N N 33 
SI8 C5  C4  SING N N 34 
SI8 C5  S1  SING N N 35 
SI8 C4  N2  SING N N 36 
SI8 C4  C2  SING N N 37 
SI8 N2  C1  SING N N 38 
SI8 S1  C3  SING N N 39 
SI8 C1  O1  DOUB N N 40 
SI8 C1  N1  SING N N 41 
SI8 C2  C3  SING N N 42 
SI8 C2  N1  SING N N 43 
SI8 C23 H1  SING N N 44 
SI8 C24 H2  SING N N 45 
SI8 C25 H3  SING N N 46 
SI8 C26 H4  SING N N 47 
SI8 C21 H5  SING N N 48 
SI8 C21 H6  SING N N 49 
SI8 C20 H7  SING N N 50 
SI8 C20 H8  SING N N 51 
SI8 C16 H9  SING N N 52 
SI8 C17 H10 SING N N 53 
SI8 C18 H11 SING N N 54 
SI8 C19 H12 SING N N 55 
SI8 C14 H13 SING N N 56 
SI8 C14 H14 SING N N 57 
SI8 C13 H15 SING N N 58 
SI8 C13 H16 SING N N 59 
SI8 C12 H17 SING N N 60 
SI8 C12 H18 SING N N 61 
SI8 C11 H19 SING N N 62 
SI8 C11 H20 SING N N 63 
SI8 N3  H21 SING N N 64 
SI8 C9  H22 SING N N 65 
SI8 C9  H23 SING N N 66 
SI8 C8  H24 SING N N 67 
SI8 C8  H25 SING N N 68 
SI8 C7  H26 SING N N 69 
SI8 C7  H27 SING N N 70 
SI8 C6  H28 SING N N 71 
SI8 C6  H29 SING N N 72 
SI8 C5  H30 SING N N 73 
SI8 C4  H31 SING N N 74 
SI8 N2  H32 SING N N 75 
SI8 C3  H33 SING N N 76 
SI8 C3  H34 SING N N 77 
SI8 C2  H35 SING N N 78 
SI8 N1  H36 SING N N 79 
SI8 O4  H37 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SI8 SMILES           ACDLabs              12.01 "[Cu]23(n1c(cccc1)CCN2(CCc4n3cccc4)CCNC(CCCCC6C5NC(NC5CS6)=O)=O)OO" 
SI8 InChI            InChI                1.03  
"InChI=1S/C26H36N6O2S.Cu.H2O2/c33-24(10-2-1-9-23-25-22(19-35-23)30-26(34)31-25)29-15-18-32(16-11-20-7-3-5-13-27-20)17-12-21-8-4-6-14-28-21;;1-2/h3-8,13-14,22-23,25H,1-2,9-12,15-19H2,(H,29,33)(H2,30,31,34);;1-2H/q;+1;/p-1/t22-,23-,25-;;/m0../s1" 
SI8 InChIKey         InChI                1.03  NDFWSJWUZXXNEK-HRKQCRCBSA-M 
SI8 SMILES_CANONICAL CACTVS               3.385 "OO[Cu].O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NCCN(CCc3ccccn3)CCc4ccccn4" 
SI8 SMILES           CACTVS               3.385 "OO[Cu].O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NCCN(CCc3ccccn3)CCc4ccccn4" 
SI8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1C[N]2(CCC3=CC=CC=[N]3[Cu]2([N]4=C1C=CC=C4)OO)CCNC(=O)CCCC[C@H]5[C@@H]6[C@H](CS5)NC(=O)N6" 
SI8 SMILES           "OpenEye OEToolkits" 2.0.6 "C1C[N]2(CCC3=CC=CC=[N]3[Cu]2([N]4=C1C=CC=C4)OO)CCNC(=O)CCCCC5C6C(CS5)NC(=O)N6" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
SI8 "SYSTEMATIC NAME" ACDLabs 12.01 "[N-(2-{bis[2-(pyridin-2-yl-kappaN)ethyl]amino-kappaN}ethyl)-5-(2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl)pentanamide](hydrogen peroxido-kappaO)copper" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SI8 "Create component" 2017-07-06 RCSB 
SI8 "Initial release"  2017-11-22 RCSB 
# 
