data_RU8
# 
_chem_comp.id                                    RU8 
_chem_comp.name                                  "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[2-iodo-N-(1,10-phenanthrolin-5-yl-kappa~2~N~1~,N~10~)acetamide]ruthenium(2+)" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C34 H26 I N7 O Ru" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    2 
_chem_comp.pdbx_initial_date                     2010-07-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        776.591 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RU8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RU8 C01  C01  C  0 1 Y N N N N N -67.953 21.263 -15.502 ? ? ? C01  RU8 1  
RU8 C02  C02  C  0 1 Y N N N N N -66.721 21.230 -14.833 ? ? ? C02  RU8 2  
RU8 C03  C03  C  0 1 Y N N N N N -65.531 21.764 -15.396 ? ? ? C03  RU8 3  
RU8 C05  C05  C  0 1 Y N N N N N -64.271 21.735 -14.736 ? ? ? C05  RU8 4  
RU8 C06  C06  C  0 1 Y N N N N N -69.069 20.722 -14.840 ? ? ? C06  RU8 5  
RU8 C08  C08  C  0 1 Y N N N N N -68.946 20.154 -13.552 ? ? ? C08  RU8 6  
RU8 N10  N10  N  0 1 Y N N N N N -67.798 20.146 -12.974 ? ? ? N10  RU8 7  
RU8 C11  C11  C  0 1 Y N N N N N -66.715 20.641 -13.551 ? ? ? C11  RU8 8  
RU8 RU1  RU1  RU 2 0 N N N N N N -67.275 19.388 -11.106 ? ? ? RU1  RU8 9  
RU8 N13  N13  N  0 1 Y N N N N N -65.353 20.043 -11.635 ? ? ? N13  RU8 10 
RU8 C14  C14  C  0 1 Y N N N N N -65.384 20.606 -12.821 ? ? ? C14  RU8 11 
RU8 C15  C15  C  0 1 Y N N N N N -64.272 19.986 -10.923 ? ? ? C15  RU8 12 
RU8 C17  C17  C  0 1 Y N N N N N -63.145 20.455 -11.383 ? ? ? C17  RU8 13 
RU8 C19  C19  C  0 1 Y N N N N N -63.058 21.056 -12.653 ? ? ? C19  RU8 14 
RU8 C21  C21  C  0 1 Y N N N N N -64.222 21.148 -13.429 ? ? ? C21  RU8 15 
RU8 N22  N22  N  0 1 Y N N N N N -66.700 18.634 -9.283  ? ? ? N22  RU8 16 
RU8 C23  C23  C  0 1 Y N N N N N -66.706 19.300 -8.169  ? ? ? C23  RU8 17 
RU8 C24  C24  C  0 1 Y N N N N N -66.250 18.689 -6.994  ? ? ? C24  RU8 18 
RU8 C25  C25  C  0 1 Y N N N N N -65.751 17.377 -7.080  ? ? ? C25  RU8 19 
RU8 C26  C26  C  0 1 Y N N N N N -65.738 16.733 -8.327  ? ? ? C26  RU8 20 
RU8 C27  C27  C  0 1 Y N N N N N -66.217 17.430 -9.447  ? ? ? C27  RU8 21 
RU8 C28  C28  C  0 1 Y N N N N N -66.228 16.846 -10.761 ? ? ? C28  RU8 22 
RU8 C29  C29  C  0 1 Y N N N N N -65.756 15.549 -10.970 ? ? ? C29  RU8 23 
RU8 C30  C30  C  0 1 Y N N N N N -65.800 15.041 -12.262 ? ? ? C30  RU8 24 
RU8 C31  C31  C  0 1 Y N N N N N -66.312 15.844 -13.279 ? ? ? C31  RU8 25 
RU8 C32  C32  C  0 1 Y N N N N N -66.756 17.128 -12.968 ? ? ? C32  RU8 26 
RU8 N33  N33  N  0 1 Y N N N N N -66.656 17.551 -11.773 ? ? ? N33  RU8 27 
RU8 N34  N34  N  0 1 Y N N N N N -69.186 18.792 -10.603 ? ? ? N34  RU8 28 
RU8 C35  C35  C  0 1 Y N N N N N -69.692 17.620 -10.797 ? ? ? C35  RU8 29 
RU8 C36  C36  C  0 1 Y N N N N N -71.007 17.382 -10.407 ? ? ? C36  RU8 30 
RU8 C37  C37  C  0 1 Y N N N N N -71.747 18.417 -9.840  ? ? ? C37  RU8 31 
RU8 C38  C38  C  0 1 Y N N N N N -71.152 19.671 -9.681  ? ? ? C38  RU8 32 
RU8 C39  C39  C  0 1 Y N N N N N -69.830 19.827 -10.102 ? ? ? C39  RU8 33 
RU8 C40  C40  C  0 1 Y N N N N N -69.167 21.087 -9.977  ? ? ? C40  RU8 34 
RU8 N41  N41  N  0 1 Y N N N N N -67.930 21.211 -10.392 ? ? ? N41  RU8 35 
RU8 C42  C42  C  0 1 Y N N N N N -69.831 22.198 -9.429  ? ? ? C42  RU8 36 
RU8 C43  C43  C  0 1 Y N N N N N -69.155 23.422 -9.323  ? ? ? C43  RU8 37 
RU8 C44  C44  C  0 1 Y N N N N N -67.829 23.475 -9.767  ? ? ? C44  RU8 38 
RU8 C45  C45  C  0 1 Y N N N N N -67.249 22.308 -10.298 ? ? ? C45  RU8 39 
RU8 N46  N46  N  0 1 N N N N N N -63.239 22.265 -15.356 ? ? ? N46  RU8 40 
RU8 C47  C47  C  0 1 N N N N N N -62.126 21.689 -15.749 ? ? ? C47  RU8 41 
RU8 O48  O48  O  0 1 N N N N N N -61.868 20.401 -15.511 ? ? ? O48  RU8 42 
RU8 C49  C49  C  0 1 N N N N N N -61.132 22.449 -16.413 ? ? ? C49  RU8 43 
RU8 H01  H01  H  0 1 N N N N N N -68.041 21.689 -16.491 ? ? ? H01  RU8 44 
RU8 H03  H03  H  0 1 N N N N N N -65.586 22.215 -16.376 ? ? ? H03  RU8 45 
RU8 H06  H06  H  0 1 N N N N N N -70.035 20.741 -15.323 ? ? ? H06  RU8 46 
RU8 H08  H08  H  0 1 N N N N N N -69.808 19.731 -13.058 ? ? ? H08  RU8 47 
RU8 H15  H15  H  0 1 N N N N N N -64.304 19.545 -9.938  ? ? ? H15  RU8 48 
RU8 H17  H17  H  0 1 N N N N N N -62.256 20.380 -10.774 ? ? ? H17  RU8 49 
RU8 H19  H19  H  0 1 N N N N N N -62.117 21.437 -13.021 ? ? ? H19  RU8 50 
RU8 H23  H23  H  0 1 N N N N N N -67.061 20.320 -8.148  ? ? ? H23  RU8 51 
RU8 H24  H24  H  0 1 N N N N N N -66.281 19.211 -6.049  ? ? ? H24  RU8 52 
RU8 H25  H25  H  0 1 N N N N N N -65.383 16.872 -6.199  ? ? ? H25  RU8 53 
RU8 H26  H26  H  0 1 N N N N N N -65.367 15.723 -8.423  ? ? ? H26  RU8 54 
RU8 H29  H29  H  0 1 N N N N N N -65.369 14.959 -10.153 ? ? ? H29  RU8 55 
RU8 H30  H30  H  0 1 N N N N N N -65.444 14.043 -12.474 ? ? ? H30  RU8 56 
RU8 H31  H31  H  0 1 N N N N N N -66.364 15.477 -14.293 ? ? ? H31  RU8 57 
RU8 H32  H32  H  0 1 N N N N N N -67.181 17.758 -13.735 ? ? ? H32  RU8 58 
RU8 H35  H35  H  0 1 N N N N N N -69.105 16.837 -11.254 ? ? ? H35  RU8 59 
RU8 H36  H36  H  0 1 N N N N N N -71.449 16.406 -10.543 ? ? ? H36  RU8 60 
RU8 H37  H37  H  0 1 N N N N N N -72.768 18.252 -9.527  ? ? ? H37  RU8 61 
RU8 H38  H38  H  0 1 N N N N N N -71.698 20.495 -9.246  ? ? ? H38  RU8 62 
RU8 H42  H42  H  0 1 N N N N N N -70.853 22.110 -9.092  ? ? ? H42  RU8 63 
RU8 H43  H43  H  0 1 N N N N N N -69.641 24.295 -8.912  ? ? ? H43  RU8 64 
RU8 H44  H44  H  0 1 N N N N N N -67.263 24.392 -9.703  ? ? ? H44  RU8 65 
RU8 H45  H45  H  0 1 N N N N N N -66.222 22.328 -10.632 ? ? ? H45  RU8 66 
RU8 HN46 HN46 H  0 0 N N N N N N -63.312 23.242 -15.556 ? ? ? HN46 RU8 67 
RU8 I1   I1   I  0 1 N Y N N N N -59.477 21.226 -16.831 ? ? ? I1   RU8 68 
RU8 H49  H49  H  0 1 N N N N N N -61.541 22.846 -17.354 ? ? ? H49  RU8 69 
RU8 H49A H49A H  0 0 N N N N N N -60.818 23.284 -15.769 ? ? ? H49A RU8 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RU8 C01 C06  DOUB Y N 1  
RU8 C01 C02  SING Y N 2  
RU8 C01 H01  SING N N 3  
RU8 C02 C11  DOUB Y N 4  
RU8 C03 C02  SING Y N 5  
RU8 C03 C05  DOUB Y N 6  
RU8 C03 H03  SING N N 7  
RU8 C05 C21  SING Y N 8  
RU8 C06 C08  SING Y N 9  
RU8 C06 H06  SING N N 10 
RU8 C08 N10  DOUB Y N 11 
RU8 C08 H08  SING N N 12 
RU8 N10 RU1  SING N N 13 
RU8 C11 N10  SING Y N 14 
RU8 C11 C14  SING Y N 15 
RU8 RU1 N34  SING N N 16 
RU8 RU1 N41  SING N N 17 
RU8 RU1 N22  SING N N 18 
RU8 N13 RU1  SING N N 19 
RU8 N13 C15  DOUB Y N 20 
RU8 C14 N13  SING Y N 21 
RU8 C15 H15  SING N N 22 
RU8 C17 C15  SING Y N 23 
RU8 C17 H17  SING N N 24 
RU8 C19 C17  DOUB Y N 25 
RU8 C19 H19  SING N N 26 
RU8 C21 C14  DOUB Y N 27 
RU8 C21 C19  SING Y N 28 
RU8 N22 C23  SING Y N 29 
RU8 C23 C24  DOUB Y N 30 
RU8 C23 H23  SING N N 31 
RU8 C24 H24  SING N N 32 
RU8 C25 C24  SING Y N 33 
RU8 C25 H25  SING N N 34 
RU8 C26 C25  DOUB Y N 35 
RU8 C26 H26  SING N N 36 
RU8 C27 N22  DOUB Y N 37 
RU8 C27 C26  SING Y N 38 
RU8 C28 C27  SING Y N 39 
RU8 C29 C28  SING Y N 40 
RU8 C29 H29  SING N N 41 
RU8 C30 C29  DOUB Y N 42 
RU8 C30 H30  SING N N 43 
RU8 C31 C30  SING Y N 44 
RU8 C31 C32  DOUB Y N 45 
RU8 C31 H31  SING N N 46 
RU8 C32 N33  SING Y N 47 
RU8 C32 H32  SING N N 48 
RU8 N33 RU1  SING N N 49 
RU8 N33 C28  DOUB Y N 50 
RU8 N34 C39  SING Y N 51 
RU8 C35 N34  DOUB Y N 52 
RU8 C35 C36  SING Y N 53 
RU8 C35 H35  SING N N 54 
RU8 C36 C37  DOUB Y N 55 
RU8 C36 H36  SING N N 56 
RU8 C37 C38  SING Y N 57 
RU8 C37 H37  SING N N 58 
RU8 C38 H38  SING N N 59 
RU8 C39 C38  DOUB Y N 60 
RU8 C39 C40  SING Y N 61 
RU8 C40 C42  SING Y N 62 
RU8 N41 C40  DOUB Y N 63 
RU8 N41 C45  SING Y N 64 
RU8 C42 C43  DOUB Y N 65 
RU8 C42 H42  SING N N 66 
RU8 C43 H43  SING N N 67 
RU8 C44 C43  SING Y N 68 
RU8 C44 H44  SING N N 69 
RU8 C45 C44  DOUB Y N 70 
RU8 C45 H45  SING N N 71 
RU8 N46 C05  SING N N 72 
RU8 N46 HN46 SING N N 73 
RU8 C47 N46  SING N N 74 
RU8 C47 O48  DOUB N N 75 
RU8 C49 C47  SING N N 76 
RU8 C49 I1   SING N N 77 
RU8 C49 H49  SING N N 78 
RU8 C49 H49A SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RU8 SMILES           ACDLabs              12.01 "ICC(=O)Nc1cc7c6c2c1cccn2[Ru+2]%105(n3ccccc3c4ccccn45)(n6ccc7)n8ccccc8c9ccccn9%10"                                                                               
RU8 SMILES_CANONICAL CACTVS               3.370 "[Ru++]|1|2|3(|n4ccccc4c5ccccn|15)(|n6ccccc6c7ccccn|27)|n8cccc9cc(NC(=O)CI)c%10cccn|3c%10c89"                                                                    
RU8 SMILES           CACTVS               3.370 "[Ru++]|1|2|3(|n4ccccc4c5ccccn|15)(|n6ccccc6c7ccccn|27)|n8cccc9cc(NC(=O)CI)c%10cccn|3c%10c89"                                                                    
RU8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1c2c3c4c(c1NC(=O)CI)C=CC=[N]4[Ru+2]56([N]3=CC=C2)([N]7=C(C=CC=C7)C8=[N]5C=CC=C8)[N]9=C(C=CC=C9)C1=CC=CC=[N]61"                                                 
RU8 SMILES           "OpenEye OEToolkits" 1.7.0 "c1c2c3c4c(c1NC(=O)CI)C=CC=[N]4[Ru+2]56([N]3=CC=C2)([N]7=C(C=CC=C7)C8=[N]5C=CC=C8)[N]9=C(C=CC=C9)C1=CC=CC=[N]61"                                                 
RU8 InChI            InChI                1.03  "InChI=1S/C14H10IN3O.2C10H8N2.Ru/c15-8-12(19)18-11-7-9-3-1-5-16-13(9)14-10(11)4-2-6-17-14;2*1-3-7-11-9(5-1)10-6-2-4-8-12-10;/h1-7H,8H2,(H,18,19);2*1-8H;/q;;;+2" 
RU8 InChIKey         InChI                1.03  IMVNBPJSKRZLRT-UHFFFAOYSA-N                                                                                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           RU8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[2-iodo-N-(1,10-phenanthrolin-5-yl-kappa~2~N~1~,N~10~)acetamide]ruthenium(2+)" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RU8 "Create component"     2010-07-20 RCSB 
RU8 "Modify aromatic_flag" 2011-06-04 RCSB 
RU8 "Modify descriptor"    2011-06-04 RCSB 
RU8 "Modify PCM"           2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            RU8 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C49 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
