data_QQ8
# 
_chem_comp.id                                    QQ8 
_chem_comp.name                                  "(4~{S})-4-azanyl-5-formamido-pentanamide" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C6 H13 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               GLN 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2020-07-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        175.186 
_chem_comp.one_letter_code                       Q 
_chem_comp.three_letter_code                     QQ8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6ZUF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
QQ8 O   OCA O 0 1 N N N N Y Y 2.545  -13.624 -2.957 3.703  -1.413 -0.151 O   QQ8 1  
QQ8 C   CAO C 0 1 N N N N Y Y 2.085  -13.655 -4.089 3.635  -0.218 0.058  C   QQ8 2  
QQ8 NM  NM  N 0 1 N N N N Y N 1.535  -14.710 -4.619 2.432  0.377  0.180  NM  QQ8 3  
QQ8 CM  CM  C 0 1 N N N N Y N 1.419  -15.958 -3.870 1.206  -0.417 0.063  CM  QQ8 4  
QQ8 CA  CAA C 0 1 N N S N Y N -0.069 -16.264 -3.736 -0.011 0.493  0.240  CA  QQ8 5  
QQ8 N   NA  N 0 1 N N N Y Y N -0.612 -16.440 -5.061 0.063  1.602  -0.721 N   QQ8 6  
QQ8 CB  CB  C 0 1 N N N N N N -0.217 -17.555 -2.935 -1.289 -0.311 -0.006 CB  QQ8 7  
QQ8 CG  CG  C 0 1 N N N N N N -1.615 -17.743 -2.458 -2.507 0.565  0.293  CG  QQ8 8  
QQ8 CD  CD  C 0 1 N N N N N N -1.750 -19.016 -1.672 -3.767 -0.227 0.050  CD  QQ8 9  
QQ8 OE1 OE1 O 0 1 N N N N N N -1.122 -20.042 -1.987 -3.696 -1.378 -0.324 OE1 QQ8 10 
QQ8 NE2 NE2 N 0 1 N N N N N N -2.553 -18.957 -0.634 -4.971 0.344  0.250  NE2 QQ8 11 
QQ8 H6  H2  H 0 1 N N N N Y N 1.186  -14.664 -5.555 2.377  1.331  0.346  H6  QQ8 12 
QQ8 H3  H3  H 0 1 N N N N Y N 1.924  -16.771 -4.411 1.170  -0.885 -0.921 H3  QQ8 13 
QQ8 H4  H4  H 0 1 N N N N Y N 1.872  -15.844 -2.874 1.198  -1.189 0.832  H4  QQ8 14 
QQ8 HA  H5  H 0 1 N N N N Y N -0.573 -15.440 -3.210 -0.022 0.891  1.255  HA  QQ8 15 
QQ8 H   H6  H 0 1 N N N Y Y N -1.589 -16.642 -4.997 0.074  1.258  -1.669 H   QQ8 16 
QQ8 H2  H7  H 0 1 N Y N Y Y N -0.479 -15.602 -5.590 -0.696 2.252  -0.581 H2  QQ8 17 
QQ8 H9  H9  H 0 1 N N N N N N 0.060  -18.406 -3.574 -1.320 -0.635 -1.046 H9  QQ8 18 
QQ8 H10 H10 H 0 1 N N N N N N 0.455  -17.515 -2.065 -1.300 -1.184 0.647  H10 QQ8 19 
QQ8 H11 H11 H 0 1 N N N N N N -1.894 -16.893 -1.817 -2.476 0.888  1.333  H11 QQ8 20 
QQ8 H12 H12 H 0 1 N N N N N N -2.289 -17.784 -3.326 -2.496 1.438  -0.360 H12 QQ8 21 
QQ8 H13 H13 H 0 1 N N N N N N -2.682 -19.762 -0.055 -5.027 1.265  0.549  H13 QQ8 22 
QQ8 H14 H14 H 0 1 N N N N N N -3.036 -18.107 -0.423 -5.781 -0.165 0.094  H14 QQ8 23 
QQ8 OXT OXT O 0 1 N Y N N Y Y ?      ?       ?      4.761  0.511  0.171  O1  QQ8 24 
QQ8 HXT HXT H 0 1 N Y N N Y Y ?      ?       ?      5.600  0.040  0.080  H1  QQ8 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
QQ8 N   CA  SING N N 1  
QQ8 NM  C   SING N N 2  
QQ8 NM  CM  SING N N 3  
QQ8 C   O   DOUB N N 4  
QQ8 CM  CA  SING N N 5  
QQ8 CA  CB  SING N N 6  
QQ8 CB  CG  SING N N 7  
QQ8 CG  CD  SING N N 8  
QQ8 OE1 CD  DOUB N N 9  
QQ8 CD  NE2 SING N N 10 
QQ8 NM  H6  SING N N 11 
QQ8 CM  H3  SING N N 12 
QQ8 CM  H4  SING N N 13 
QQ8 CA  HA  SING N N 14 
QQ8 N   H   SING N N 15 
QQ8 N   H2  SING N N 16 
QQ8 CB  H9  SING N N 17 
QQ8 CB  H10 SING N N 18 
QQ8 CG  H11 SING N N 19 
QQ8 CG  H12 SING N N 20 
QQ8 NE2 H13 SING N N 21 
QQ8 NE2 H14 SING N N 22 
QQ8 C   OXT SING N N 23 
QQ8 OXT HXT SING N N 24 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
QQ8 InChI            InChI                1.06  "InChI=1S/C6H13N3O3/c7-4(1-2-5(8)10)3-9-6(11)12/h4,9H,1-3,7H2,(H2,8,10)(H,11,12)/t4-/m0/s1" 
QQ8 InChIKey         InChI                1.06  MISYRPXYMKXXTM-BYPYZUCNSA-N                                                                 
QQ8 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCC(N)=O)CNC(O)=O"                                                                 
QQ8 SMILES           CACTVS               3.385 "N[CH](CCC(N)=O)CNC(O)=O"                                                                   
QQ8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(CC(=O)N)[C@@H](CNC(=O)O)N"                                                               
QQ8 SMILES           "OpenEye OEToolkits" 2.0.7 "C(CC(=O)N)C(CNC(=O)O)N"                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           QQ8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(2~{S})-2,5-bis(azanyl)-5-oxidanylidene-pentyl]carbamic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
QQ8 "Create component"   2020-07-23 PDBE 
QQ8 "Initial release"    2021-06-09 RCSB 
QQ8 "Modify backbone"    2023-11-03 PDBE 
QQ8 "Other modification" 2024-06-28 PDBE 
QQ8 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            QQ8 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
