data_Q58
#

_chem_comp.id                                   Q58
_chem_comp.name                                 DesF-3R/4076
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H30 N6 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "4-[[4-[(3~{R})-3-(hydroxymethyl)-3-methyl-1,2-dihydropyrrolo[2,3-b]pyridin-5-yl]pyrimidin-2-yl]amino]-3-methoxy-~{N}-(oxan-4-yl)benzamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-05-17
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       490.554
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q58
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6Z1Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q58  C15  C1   C  0  1  N  N  N  43.371  14.487  -12.506   -5.453   0.744  -0.255  C15  Q58   1  
Q58  C13  C2   C  0  1  Y  N  N  41.383  13.990  -14.013   -3.257  -0.362   0.131  C13  Q58   2  
Q58  C14  C3   C  0  1  Y  N  N  40.880  13.487  -15.197   -1.880  -0.335   0.133  C14  Q58   3  
Q58  N5   N1   N  0  1  N  N  N  33.541  12.493  -14.389    8.508  -1.257   0.111  N5   Q58   4  
Q58  C16  C4   C  0  1  N  N  N  43.243  14.612  -10.055   -7.571  -0.409   0.093  C16  Q58   5  
Q58  C17  C5   C  0  1  N  N  N  42.719  15.990   -9.686   -8.054  -1.852  -0.087  C17  Q58   6  
Q58  C12  C6   C  0  1  Y  N  N  42.753  13.977  -13.767   -3.978   0.774  -0.246  C12  Q58   7  
Q58  N4   N2   N  0  1  Y  N  N  34.391  11.330  -16.372    6.464  -2.552  -0.308  N4   Q58   8  
Q58  C10  C7   C  0  1  Y  N  N  43.144  12.960  -15.905   -1.919   1.959  -0.617  C10  Q58   9  
Q58  C9   C8   C  0  1  Y  N  N  41.764  12.967  -16.147   -1.204   0.821  -0.239  C9   Q58  10  
Q58  O    O1   O  0  1  N  N  N  42.555  15.326   -7.373  -10.011  -1.337   1.233  O    Q58  11  
Q58  N3   N3   N  0  1  N  N  N  42.726  14.221  -11.365   -6.107  -0.380   0.101  N3   Q58  12  
Q58  N2   N4   N  0  1  N  N  N  41.390  12.434  -17.401    0.190   0.842  -0.240  N2   Q58  13  
Q58  N1   N5   N  0  1  Y  N  N  39.106  11.989  -17.103    2.219  -0.316  -0.268  N1   Q58  14  
Q58  C11  C9   C  0  1  Y  N  N  43.627  13.466  -14.721   -3.299   1.939  -0.616  C11  Q58  15  
Q58  C5   C10  C  0  1  Y  N  N  37.977  11.448  -17.586    2.931  -1.433  -0.404  C5   Q58  16  
Q58  C    C11  C  0  1  N  N  N  36.033  12.726  -12.416    7.404   1.934  -0.687  C    Q58  17  
Q58  C1   C12  C  0  1  N  N  R  35.505  13.490  -13.631    7.450   0.861   0.404  C1   Q58  18  
Q58  C2   C13  C  0  1  Y  N  N  35.695  12.655  -14.878    6.451  -0.236   0.119  C2   Q58  19  
Q58  C3   C14  C  0  1  Y  N  N  36.839  12.439  -15.609    5.077  -0.207   0.003  C3   Q58  20  
Q58  C4   C15  C  0  1  Y  N  N  36.768  11.617  -16.737    4.406  -1.406  -0.269  C4   Q58  21  
Q58  N    N6   N  0  1  Y  N  N  40.245  11.456  -19.127    0.244  -1.459  -0.645  N    Q58  22  
Q58  C8   C16  C  0  1  Y  N  N  40.204  11.946  -17.868    0.901  -0.338  -0.388  C8   Q58  23  
Q58  C7   C17  C  0  1  Y  N  N  39.095  10.976  -19.599    0.886  -2.607  -0.793  C7   Q58  24  
Q58  C6   C18  C  0  1  Y  N  N  37.917  10.968  -18.883    2.264  -2.632  -0.676  C6   Q58  25  
Q58  C21  C19  C  0  1  N  N  N  45.345  12.442  -16.705   -2.050   4.221  -1.339  C21  Q58  26  
Q58  O2   O2   O  0  1  N  N  N  43.933  12.431  -16.886   -1.255   3.091  -0.975  O2   Q58  27  
Q58  O1   O3   O  0  1  N  N  N  44.448  15.077  -12.529   -6.079   1.735  -0.578  O1   Q58  28  
Q58  C20  C20  C  0  1  N  N  N  42.883  13.569   -9.008   -8.102   0.133   1.423  C20  Q58  29  
Q58  C19  C21  C  0  1  N  N  N  43.181  14.068   -7.615   -9.630   0.025   1.436  C19  Q58  30  
Q58  C18  C22  C  0  1  N  N  N  43.058  16.325   -8.255   -9.582  -1.883  -0.016  C18  Q58  31  
Q58  C22  C23  C  0  1  Y  N  N  35.503  11.102  -17.101    5.155  -2.570  -0.427  C22  Q58  32  
Q58  C23  C24  C  0  1  Y  N  N  34.513  12.114  -15.289    7.140  -1.433  -0.041  C23  Q58  33  
Q58  C25  C25  C  0  1  N  N  N  36.246  14.806  -13.811    7.178   1.483   1.775  C25  Q58  34  
Q58  O3   O4   O  0  1  N  N  N  35.948  15.731  -12.773    8.183   2.457   2.065  O3   Q58  35  
Q58  C24  C26  C  0  1  N  N  N  33.977  13.637  -13.587    8.812   0.147   0.398  C24  Q58  36  
Q58  H8   H1   H  0  1  N  N  N  40.709  14.396  -13.273   -3.780  -1.263   0.417  H8   Q58  37  
Q58  H9   H2   H  0  1  N  N  N  39.817  13.495  -15.387   -1.324  -1.214   0.425  H9   Q58  38  
Q58  H24  H3   H  0  1  N  N  N  32.713  12.743  -14.890    9.169  -1.964   0.042  H24  Q58  39  
Q58  H11  H4   H  0  1  N  N  N  44.340  14.670  -10.112   -7.945   0.205  -0.726  H11  Q58  40  
Q58  H13  H5   H  0  1  N  N  N  43.175  16.739  -10.350   -7.726  -2.227  -1.056  H13  Q58  41  
Q58  H12  H6   H  0  1  N  N  N  41.626  16.006   -9.811   -7.639  -2.476   0.705  H12  Q58  42  
Q58  H10  H7   H  0  1  N  N  N  41.854  13.734  -11.410   -5.607  -1.169   0.363  H10  Q58  43  
Q58  H6   H8   H  0  1  N  N  N  42.132  12.410  -18.071    0.663   1.683  -0.137  H6   Q58  44  
Q58  H7   H9   H  0  1  N  N  N  44.690  13.467  -14.531   -3.853   2.819  -0.908  H7   Q58  45  
Q58  H    H10  H  0  1  N  N  N  35.894  13.335  -11.511    7.581   1.472  -1.658  H    Q58  46  
Q58  H2   H11  H  0  1  N  N  N  35.482  11.780  -12.310    6.424   2.411  -0.685  H2   Q58  47  
Q58  H1   H12  H  0  1  N  N  N  37.103  12.513  -12.554    8.173   2.681  -0.494  H1   Q58  48  
Q58  H3   H13  H  0  1  N  N  N  37.774  12.895  -15.318    4.532   0.717   0.120  H3   Q58  49  
Q58  H5   H14  H  0  1  N  N  N  39.085  10.570  -20.600    0.340  -3.515  -1.002  H5   Q58  50  
Q58  H4   H15  H  0  1  N  N  N  36.994  10.606  -19.312    2.813  -3.555  -0.791  H4   Q58  51  
Q58  H20  H16  H  0  1  N  N  N  45.831  11.983  -17.579   -2.676   3.965  -2.194  H20  Q58  52  
Q58  H22  H17  H  0  1  N  N  N  45.692  13.480  -16.596   -2.683   4.506  -0.498  H22  Q58  53  
Q58  H21  H18  H  0  1  N  N  N  45.603  11.872  -15.800   -1.398   5.054  -1.602  H21  Q58  54  
Q58  H19  H19  H  0  1  N  N  N  41.810  13.339   -9.085   -7.689  -0.451   2.246  H19  Q58  55  
Q58  H18  H20  H  0  1  N  N  N  43.468  12.656   -9.195   -7.810   1.177   1.534  H18  Q58  56  
Q58  H16  H21  H  0  1  N  N  N  42.808  13.335   -6.884  -10.044   0.641   0.638  H16  Q58  57  
Q58  H17  H22  H  0  1  N  N  N  44.269  14.181   -7.499  -10.010   0.370   2.398  H17  Q58  58  
Q58  H15  H23  H  0  1  N  N  N  44.151  16.385   -8.147   -9.997  -1.292  -0.832  H15  Q58  59  
Q58  H14  H24  H  0  1  N  N  N  42.610  17.295   -7.995   -9.929  -2.913  -0.100  H14  Q58  60  
Q58  H23  H25  H  0  1  N  N  N  35.424  10.503  -17.996    4.654  -3.500  -0.650  H23  Q58  61  
Q58  H27  H26  H  0  1  N  N  N  37.328  14.607  -13.810    6.199   1.962   1.769  H27  Q58  62  
Q58  H28  H27  H  0  1  N  N  N  35.955  15.248  -14.775    7.197   0.704   2.537  H28  Q58  63  
Q58  H29  H28  H  0  1  N  N  N  36.428  16.538  -12.920    8.073   2.892   2.921  H29  Q58  64  
Q58  H26  H29  H  0  1  N  N  N  33.653  14.587  -14.036    9.292   0.239   1.372  H26  Q58  65  
Q58  H25  H30  H  0  1  N  N  N  33.598  13.571  -12.556    9.453   0.562  -0.380  H25  Q58  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q58  C7   N    DOUB  Y  N   1  
Q58  C7   C6   SING  Y  N   2  
Q58  N    C8   SING  Y  N   3  
Q58  C6   C5   DOUB  Y  N   4  
Q58  C8   N2   SING  N  N   5  
Q58  C8   N1   DOUB  Y  N   6  
Q58  C5   N1   SING  Y  N   7  
Q58  C5   C4   SING  N  N   8  
Q58  N2   C9   SING  N  N   9  
Q58  C22  C4   DOUB  Y  N  10  
Q58  C22  N4   SING  Y  N  11  
Q58  O2   C21  SING  N  N  12  
Q58  O2   C10  SING  N  N  13  
Q58  C4   C3   SING  Y  N  14  
Q58  N4   C23  DOUB  Y  N  15  
Q58  C9   C10  DOUB  Y  N  16  
Q58  C9   C14  SING  Y  N  17  
Q58  C10  C11  SING  Y  N  18  
Q58  C3   C2   DOUB  Y  N  19  
Q58  C23  C2   SING  Y  N  20  
Q58  C23  N5   SING  N  N  21  
Q58  C14  C13  DOUB  Y  N  22  
Q58  C2   C1   SING  N  N  23  
Q58  C11  C12  DOUB  Y  N  24  
Q58  N5   C24  SING  N  N  25  
Q58  C13  C12  SING  Y  N  26  
Q58  C25  C1   SING  N  N  27  
Q58  C25  O3   SING  N  N  28  
Q58  C12  C15  SING  N  N  29  
Q58  C1   C24  SING  N  N  30  
Q58  C1   C    SING  N  N  31  
Q58  O1   C15  DOUB  N  N  32  
Q58  C15  N3   SING  N  N  33  
Q58  N3   C16  SING  N  N  34  
Q58  C16  C17  SING  N  N  35  
Q58  C16  C20  SING  N  N  36  
Q58  C17  C18  SING  N  N  37  
Q58  C20  C19  SING  N  N  38  
Q58  C18  O    SING  N  N  39  
Q58  C19  O    SING  N  N  40  
Q58  C13  H8   SING  N  N  41  
Q58  C14  H9   SING  N  N  42  
Q58  N5   H24  SING  N  N  43  
Q58  C16  H11  SING  N  N  44  
Q58  C17  H13  SING  N  N  45  
Q58  C17  H12  SING  N  N  46  
Q58  N3   H10  SING  N  N  47  
Q58  N2   H6   SING  N  N  48  
Q58  C11  H7   SING  N  N  49  
Q58  C    H    SING  N  N  50  
Q58  C    H2   SING  N  N  51  
Q58  C    H1   SING  N  N  52  
Q58  C3   H3   SING  N  N  53  
Q58  C7   H5   SING  N  N  54  
Q58  C6   H4   SING  N  N  55  
Q58  C21  H20  SING  N  N  56  
Q58  C21  H22  SING  N  N  57  
Q58  C21  H21  SING  N  N  58  
Q58  C20  H19  SING  N  N  59  
Q58  C20  H18  SING  N  N  60  
Q58  C19  H16  SING  N  N  61  
Q58  C19  H17  SING  N  N  62  
Q58  C18  H15  SING  N  N  63  
Q58  C18  H14  SING  N  N  64  
Q58  C22  H23  SING  N  N  65  
Q58  C25  H27  SING  N  N  66  
Q58  C25  H28  SING  N  N  67  
Q58  O3   H29  SING  N  N  68  
Q58  C24  H26  SING  N  N  69  
Q58  C24  H25  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q58  InChI             InChI                 1.03   "InChI=1S/C26H30N6O4/c1-26(15-33)14-29-23-19(26)11-17(13-28-23)20-5-8-27-25(31-20)32-21-4-3-16(12-22(21)35-2)24(34)30-18-6-9-36-10-7-18/h3-5,8,11-13,18,33H,6-7,9-10,14-15H2,1-2H3,(H,28,29)(H,30,34)(H,27,31,32)/t26-/m1/s1"  
Q58  InChIKey          InChI                 1.03   SSABYHFPMHHFLH-AREMUKBSSA-N  
Q58  SMILES_CANONICAL  CACTVS                3.385  "COc1cc(ccc1Nc2nccc(n2)c3cnc4NC[C@](C)(CO)c4c3)C(=O)NC5CCOCC5"  
Q58  SMILES            CACTVS                3.385  "COc1cc(ccc1Nc2nccc(n2)c3cnc4NC[C](C)(CO)c4c3)C(=O)NC5CCOCC5"  
Q58  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@@]1(CNc2c1cc(cn2)c3ccnc(n3)Nc4ccc(cc4OC)C(=O)NC5CCOCC5)CO"  
Q58  SMILES            "OpenEye OEToolkits"  2.0.7  "CC1(CNc2c1cc(cn2)c3ccnc(n3)Nc4ccc(cc4OC)C(=O)NC5CCOCC5)CO"  
#
_pdbx_chem_comp_identifier.comp_id          Q58
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[[4-[(3~{R})-3-(hydroxymethyl)-3-methyl-1,2-dihydropyrrolo[2,3-b]pyridin-5-yl]pyrimidin-2-yl]amino]-3-methoxy-~{N}-(oxan-4-yl)benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q58  "Create component"  2020-05-17  PDBE  
Q58  "Initial release"   2020-07-08  RCSB  
Q58  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Q58
_pdbx_chem_comp_synonyms.name        "4-[[4-[(3~{R})-3-(hydroxymethyl)-3-methyl-1,2-dihydropyrrolo[2,3-b]pyridin-5-yl]pyrimidin-2-yl]amino]-3-methoxy-~{N}-(oxan-4-yl)benzamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
