data_NX8
#

_chem_comp.id                                   NX8
_chem_comp.name                                 "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-(piperidin-4-ylmethyl)oxolane-2-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H23 N7 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-01-02
_chem_comp.pdbx_modified_date                   2020-02-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       377.398
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    NX8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TTX
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NX8  C4   C1   C  0  1  Y  N  N  10.033  -16.865  -11.556   4.175  -0.181  -0.260  C4   NX8   1  
NX8  C5   C2   C  0  1  Y  N  N   9.596  -15.964  -12.493   5.034   0.873   0.094  C5   NX8   2  
NX8  C6   C3   C  0  1  Y  N  N   9.306  -14.649  -12.072   6.417   0.624   0.112  C6   NX8   3  
NX8  C8   C4   C  0  1  Y  N  N   9.950  -17.910  -13.526   3.006   1.635   0.181  C8   NX8   4  
NX8  N1   N1   N  0  1  Y  N  N   9.472  -14.349  -10.776   6.845  -0.593  -0.206  N1   NX8   5  
NX8  N3   N2   N  0  1  Y  N  N  10.172  -16.490  -10.256   4.696  -1.365  -0.563  N3   NX8   6  
NX8  C2   C5   C  0  1  Y  N  N   9.883  -15.257   -9.899   5.999  -1.552  -0.533  C2   NX8   7  
NX8  CAG  C6   C  0  1  N  N  N  16.182  -23.993  -17.297  -7.859   0.507   0.858  CAG  NX8   8  
NX8  CAH  C7   C  0  1  N  N  N  16.711  -24.438  -14.907  -7.089  -1.170  -0.713  CAH  NX8   9  
NX8  CAI  C8   C  0  1  N  N  N  15.996  -22.611  -16.684  -6.568   1.312   0.687  CAI  NX8  10  
NX8  CAJ  C9   C  0  1  N  N  N  15.469  -23.630  -14.489  -5.776  -0.416  -0.931  CAJ  NX8  11  
NX8  CAK  C10  C  0  1  N  N  N  14.987  -21.216  -14.899  -4.140   1.163   0.110  CAK  NX8  12  
NX8  CAR  C11  C  0  1  N  N  N  13.209  -20.846  -13.190  -1.782   0.733  -0.328  CAR  NX8  13  
NX8  CAV  C12  C  0  1  N  N  N  15.046  -22.671  -15.543  -5.421   0.359   0.342  CAV  NX8  14  
NX8  CAW  C13  C  0  1  N  N  S  11.458  -21.461  -11.670  -0.356  -1.032   0.733  CAW  NX8  15  
NX8  CAX  C14  C  0  1  N  N  R  10.317  -20.348  -12.156   1.184  -1.157   0.782  CAX  NX8  16  
NX8  CAY  C15  C  0  1  N  N  S  12.637  -20.843  -11.773  -0.628  -0.211  -0.547  CAY  NX8  17  
NX8  CAZ  C16  C  0  1  N  N  R  10.713  -19.299  -11.565   1.662  -0.397  -0.475  CAZ  NX8  18  
NX8  N6   N3   N  0  1  N  N  N   8.846  -13.638  -12.989   7.311   1.624   0.453  N6   NX8  19  
NX8  N7   N4   N  0  1  Y  N  N   9.554  -16.635  -13.717   4.256   1.952   0.351  N7   NX8  20  
NX8  N9   N5   N  0  1  Y  N  N  10.248  -18.065  -12.231   2.903   0.328  -0.191  N9   NX8  21  
NX8  NAO  N6   N  0  1  N  N  N  16.616  -24.987  -16.272  -8.156  -0.215  -0.386  NAO  NX8  22  
NX8  NAP  N7   N  0  1  N  N  N  14.544  -21.300  -13.425  -3.018   0.246  -0.103  NAP  NX8  23  
NX8  OAB  O1   O  0  1  N  N  N  12.592  -20.455  -14.077  -1.599   1.932  -0.356  OAB  NX8  24  
NX8  OAC  O2   O  0  1  N  N  N  11.180  -21.738  -10.302  -0.959  -2.324   0.637  OAC  NX8  25  
NX8  OAD  O3   O  0  1  N  N  N   9.004  -20.752  -11.655   1.578  -2.529   0.718  OAD  NX8  26  
NX8  OAQ  O4   O  0  1  N  N  N  12.337  -19.376  -11.576   0.590   0.529  -0.777  OAQ  NX8  27  
NX8  H1   H1   H  0  1  N  N  N  10.015  -18.674  -14.287   2.172   2.309   0.316  H1   NX8  28  
NX8  H2   H2   H  0  1  N  N  N   9.983  -14.975   -8.861   6.391  -2.527  -0.784  H2   NX8  29  
NX8  H3   H3   H  0  1  N  N  N  15.228  -24.322  -17.734  -7.736  -0.207   1.672  H3   NX8  30  
NX8  H4   H4   H  0  1  N  N  N  16.946  -23.935  -18.086  -8.681   1.184   1.090  H4   NX8  31  
NX8  H5   H5   H  0  1  N  N  N  16.838  -25.273  -14.203  -7.353  -1.711  -1.622  H5   NX8  32  
NX8  H6   H6   H  0  1  N  N  N  17.590  -23.779  -14.856  -6.971  -1.876   0.109  H6   NX8  33  
NX8  H7   H7   H  0  1  N  N  N  16.968  -22.240  -16.327  -6.695   2.036  -0.118  H7   NX8  34  
NX8  H8   H8   H  0  1  N  N  N  15.601  -21.926  -17.449  -6.340   1.835   1.615  H8   NX8  35  
NX8  H9   H9   H  0  1  N  N  N  15.703  -23.069  -13.572  -4.981  -1.126  -1.158  H9   NX8  36  
NX8  H10  H10  H  0  1  N  N  N  14.642  -24.328  -14.291  -5.890   0.281  -1.761  H10  NX8  37  
NX8  H11  H11  H  0  1  N  N  N  15.984  -20.755  -14.952  -4.263   1.797  -0.769  H11  NX8  38  
NX8  H12  H12  H  0  1  N  N  N  14.268  -20.600  -15.459  -3.940   1.787   0.981  H12  NX8  39  
NX8  H13  H13  H  0  1  N  N  N  14.041  -22.933  -15.906  -5.268  -0.340   1.164  H13  NX8  40  
NX8  H14  H14  H  0  1  N  N  N  11.371  -22.357  -12.302  -0.724  -0.504   1.612  H14  NX8  41  
NX8  H15  H15  H  0  1  N  N  N  10.327  -20.291  -13.254   1.576  -0.689   1.685  H15  NX8  42  
NX8  H16  H16  H  0  1  N  N  N  13.388  -21.192  -11.049  -0.836  -0.875  -1.387  H16  NX8  43  
NX8  H17  H17  H  0  1  N  N  N  10.398  -19.274  -10.511   1.809  -1.090  -1.304  H17  NX8  44  
NX8  H18  H18  H  0  1  N  N  N   8.701  -12.781  -12.495   6.986   2.508   0.683  H18  NX8  45  
NX8  H19  H19  H  0  1  N  N  N   9.532  -13.499  -13.704   8.264   1.440   0.462  H19  NX8  46  
NX8  H20  H20  H  0  1  N  N  N  15.956  -25.738  -16.264  -9.051  -0.677  -0.331  H20  NX8  47  
NX8  H22  H22  H  0  1  N  N  N  15.138  -21.642  -12.697  -3.165  -0.713  -0.081  H22  NX8  48  
NX8  H23  H23  H  0  1  N  N  N  11.806  -22.372   -9.973  -1.924  -2.303   0.573  H23  NX8  49  
NX8  H24  H24  H  0  1  N  N  N   8.351  -20.119  -11.930   1.252  -3.066   1.454  H24  NX8  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NX8  CAG  CAI  SING  N  N   1  
NX8  CAG  NAO  SING  N  N   2  
NX8  CAI  CAV  SING  N  N   3  
NX8  NAO  CAH  SING  N  N   4  
NX8  CAV  CAK  SING  N  N   5  
NX8  CAV  CAJ  SING  N  N   6  
NX8  CAH  CAJ  SING  N  N   7  
NX8  CAK  NAP  SING  N  N   8  
NX8  OAB  CAR  DOUB  N  N   9  
NX8  N7   C8   DOUB  Y  N  10  
NX8  N7   C5   SING  Y  N  11  
NX8  C8   N9   SING  Y  N  12  
NX8  NAP  CAR  SING  N  N  13  
NX8  CAR  CAY  SING  N  N  14  
NX8  N6   C6   SING  N  N  15  
NX8  C5   C6   DOUB  Y  N  16  
NX8  C5   C4   SING  Y  N  17  
NX8  N9   CAZ  SING  N  N  18  
NX8  N9   C4   SING  Y  N  19  
NX8  CAX  CAW  SING  N  N  20  
NX8  CAX  OAD  SING  N  N  21  
NX8  CAX  CAZ  SING  N  N  22  
NX8  C6   N1   SING  Y  N  23  
NX8  CAY  CAW  SING  N  N  24  
NX8  CAY  OAQ  SING  N  N  25  
NX8  CAW  OAC  SING  N  N  26  
NX8  OAQ  CAZ  SING  N  N  27  
NX8  C4   N3   DOUB  Y  N  28  
NX8  N1   C2   DOUB  Y  N  29  
NX8  N3   C2   SING  Y  N  30  
NX8  C8   H1   SING  N  N  31  
NX8  C2   H2   SING  N  N  32  
NX8  CAG  H3   SING  N  N  33  
NX8  CAG  H4   SING  N  N  34  
NX8  CAH  H5   SING  N  N  35  
NX8  CAH  H6   SING  N  N  36  
NX8  CAI  H7   SING  N  N  37  
NX8  CAI  H8   SING  N  N  38  
NX8  CAJ  H9   SING  N  N  39  
NX8  CAJ  H10  SING  N  N  40  
NX8  CAK  H11  SING  N  N  41  
NX8  CAK  H12  SING  N  N  42  
NX8  CAV  H13  SING  N  N  43  
NX8  CAW  H14  SING  N  N  44  
NX8  CAX  H15  SING  N  N  45  
NX8  CAY  H16  SING  N  N  46  
NX8  CAZ  H17  SING  N  N  47  
NX8  N6   H18  SING  N  N  48  
NX8  N6   H19  SING  N  N  49  
NX8  NAO  H20  SING  N  N  50  
NX8  NAP  H22  SING  N  N  51  
NX8  OAC  H23  SING  N  N  52  
NX8  OAD  H24  SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NX8  InChI             InChI                 1.03   "InChI=1S/C16H23N7O4/c17-13-9-14(21-6-20-13)23(7-22-9)16-11(25)10(24)12(27-16)15(26)19-5-8-1-3-18-4-2-8/h6-8,10-12,16,18,24-25H,1-5H2,(H,19,26)(H2,17,20,21)/t10-,11+,12-,16+/m0/s1"  
NX8  InChIKey          InChI                 1.03   QORMXDVXCHKGRB-MEQWQQMJSA-N  
NX8  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]([C@@H](O)[C@H]3O)C(=O)NCC4CCNCC4"  
NX8  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH]([CH](O)[CH]3O)C(=O)NCC4CCNCC4"  
NX8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)C(=O)NCC4CCNCC4)O)O)N"  
NX8  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)C(=O)NCC4CCNCC4)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          NX8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)-~{N}-(piperidin-4-ylmethyl)oxolane-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NX8  "Create component"  2020-01-02  PDBE  
NX8  "Initial release"   2020-03-04  RCSB  
##
