data_N38
# 
_chem_comp.id                                    N38 
_chem_comp.name                                  
;3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-{[3-(4-methoxyphenoxy)propyl]sulfonyl}-L-
alaninamide
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H41 N3 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;3-cyclohexyl-N~2~-{[3-(4-methoxyphenoxy)propyl]sulfonyl}-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alan
inamide (bound form)
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-12 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.685 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N38 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5T6D 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N38 C01 C1  C 0 1 N N N N N N 2.950  2.103  -10.679 -8.836 1.002  -0.375 C01 N38 1  
N38 C03 C2  C 0 1 Y N N N N N 4.307  4.108  -10.980 -7.512 -0.889 0.198  C03 N38 2  
N38 C04 C3  C 0 1 Y N N N N N 5.280  3.671  -10.089 -7.353 -2.169 0.709  C04 N38 3  
N38 C05 C4  C 0 1 Y N N N N N 6.381  4.471  -9.810  -6.101 -2.751 0.736  C05 N38 4  
N38 C06 C5  C 0 1 Y N N N N N 6.504  5.713  -10.421 -5.003 -2.057 0.252  C06 N38 5  
N38 C08 C6  C 0 1 N N N N N N 8.812  5.845  -9.913  -2.684 -1.857 -0.236 C08 N38 6  
N38 C09 C7  C 0 1 N N N N N N 9.939  6.879  -9.872  -1.387 -2.661 -0.123 C09 N38 7  
N38 C10 C8  C 0 1 N N N N N N 9.595  7.998  -8.893  -0.224 -1.834 -0.675 C10 N38 8  
N38 C13 C9  C 0 1 N N S N N N 9.718  11.937 -8.476  2.774  -0.511 -0.510 C13 N38 9  
N38 C14 C10 C 0 1 N N N N N N 9.608  12.753 -7.205  4.276  -0.235 -0.591 C14 N38 10 
N38 C15 C11 C 0 1 N N N N N N 8.666  12.153 -6.162  5.035  -1.309 0.191  C15 N38 11 
N38 C16 C12 C 0 1 N N N N N N 7.250  12.186 -6.727  4.688  -1.199 1.677  C16 N38 12 
N38 C17 C13 C 0 1 N N N N N N 6.234  11.727 -5.703  5.447  -2.273 2.459  C17 N38 13 
N38 C18 C14 C 0 1 N N N N N N 6.375  12.509 -4.382  6.952  -2.072 2.271  C18 N38 14 
N38 C19 C15 C 0 1 N N N N N N 7.798  12.543 -3.826  7.300  -2.182 0.785  C19 N38 15 
N38 C20 C16 C 0 1 N N N N N N 8.787  13.001 -4.876  6.541  -1.108 0.003  C20 N38 16 
N38 C21 C17 C 0 1 N N N N N N 10.512 12.769 -9.504  2.021  0.596  -1.201 C21 N38 17 
N38 C23 C18 C 0 1 N N S N N N 10.390 14.372 -11.442 1.410  2.943  -1.440 C23 N38 18 
N38 C24 C19 C 0 1 N N N N N N 9.948  13.812 -12.805 1.122  4.065  -0.441 C24 N38 19 
N38 C25 C20 C 0 1 N N S N N N 10.314 12.345 -13.124 0.197  3.542  0.660  C25 N38 20 
N38 C26 C21 C 0 1 N N N N N N 10.055 12.078 -14.409 -0.092 4.630  1.670  C26 N38 21 
N38 C28 C22 C 0 1 N N N N N N 12.219 11.028 -13.782 -2.133 3.614  1.226  C28 N38 22 
N38 C29 C23 C 0 1 N N N N N N 11.915 11.953 -12.871 -1.191 3.187  0.078  C29 N38 23 
N38 C31 C24 C 0 1 N N N N N N 10.056 15.851 -11.313 2.254  3.491  -2.592 C31 N38 24 
N38 C36 C25 C 0 1 Y N N N N N 5.546  6.143  -11.321 -5.161 -0.778 -0.261 C36 N38 25 
N38 C37 C26 C 0 1 Y N N N N N 4.448  5.343  -11.596 -6.413 -0.195 -0.287 C37 N38 26 
N38 N12 N1  N 0 1 N N N N N N 10.343 10.687 -8.211  2.476  -1.787 -1.165 N12 N38 27 
N38 N22 N2  N 0 1 N N N N N N 9.708  13.566 -10.405 2.142  1.866  -0.768 N22 N38 28 
N38 N27 N3  N 0 1 N N N N N N 11.208 11.205 -14.936 -1.403 4.652  1.964  N27 N38 29 
N38 O02 O1  O 0 1 N N N N N N 3.173  3.338  -11.315 -8.746 -0.318 0.166  O02 N38 30 
N38 O07 O2  O 0 1 N N N N N N 7.608  6.531  -10.151 -3.770 -2.630 0.279  O07 N38 31 
N38 O30 O3  O 0 1 N N N N N N 9.124  12.393 -15.055 0.739  5.375  2.146  O30 N38 32 
N38 O32 O4  O 0 1 N N N N N N 10.681 16.354 -10.140 3.434  4.105  -2.069 O32 N38 33 
N38 O33 O5  O 0 1 N N N N N N 11.706 12.787 -9.551  1.306  0.344  -2.148 O33 N38 34 
N38 O34 O6  O 0 1 N N N N N N 11.776 9.341  -9.861  1.684  -2.947 0.823  O34 N38 35 
N38 O35 O7  O 0 1 N N N N N N 9.716  10.039 -10.619 1.292  -3.897 -1.427 O35 N38 36 
N38 S11 S1  S 0 1 N N N N N N 10.399 9.515  -9.445  1.314  -2.788 -0.540 S11 N38 37 
N38 H1  H1  H 0 1 N N N N N N 2.025  1.652  -11.067 -9.872 1.338  -0.341 H1  N38 38 
N38 H2  H2  H 0 1 N N N N N N 3.797  1.430  -10.878 -8.215 1.678  0.213  H2  N38 39 
N38 H3  H3  H 0 1 N N N N N N 2.854  2.261  -9.595  -8.489 0.996  -1.408 H3  N38 40 
N38 H4  H4  H 0 1 N N N N N N 5.180  2.707  -9.612  -8.208 -2.709 1.087  H4  N38 41 
N38 H5  H5  H 0 1 N N N N N N 7.139  4.129  -9.121  -5.977 -3.747 1.135  H5  N38 42 
N38 H6  H6  H 0 1 N N N N N N 8.756  5.314  -8.951  -2.590 -0.935 0.336  H6  N38 43 
N38 H7  H7  H 0 1 N N N N N N 8.997  5.122  -10.721 -2.872 -1.618 -1.283 H7  N38 44 
N38 H8  H8  H 0 1 N N N N N N 10.870 6.389  -9.550  -1.198 -2.901 0.924  H8  N38 45 
N38 H9  H9  H 0 1 N N N N N N 10.077 7.305  -10.877 -1.480 -3.584 -0.695 H9  N38 46 
N38 H10 H10 H 0 1 N N N N N N 8.505  8.145  -8.867  -0.413 -1.595 -1.721 H10 N38 47 
N38 H11 H11 H 0 1 N N N N N N 9.954  7.734  -7.887  -0.131 -0.912 -0.102 H11 N38 48 
N38 H12 H12 H 0 1 N N N N N N 8.706  11.771 -8.875  2.469  -0.560 0.536  H12 N38 49 
N38 H13 H13 H 0 1 N N N N N N 10.610 12.836 -6.759  4.593  -0.252 -1.633 H13 N38 50 
N38 H14 H14 H 0 1 N N N N N N 9.240  13.756 -7.468  4.489  0.745  -0.163 H14 N38 51 
N38 H15 H15 H 0 1 N N N N N N 8.959  11.115 -5.948  4.752  -2.295 -0.176 H15 N38 52 
N38 H16 H16 H 0 1 N N N N N N 7.011  13.215 -7.032  4.972  -0.213 2.045  H16 N38 53 
N38 H17 H17 H 0 1 N N N N N N 7.199  11.523 -7.603  3.616  -1.342 1.811  H17 N38 54 
N38 H18 H18 H 0 1 N N N N N N 5.223  11.885 -6.106  5.200  -2.195 3.518  H18 N38 55 
N38 H19 H19 H 0 1 N N N N N N 6.386  10.656 -5.503  5.163  -3.259 2.091  H19 N38 56 
N38 H20 H20 H 0 1 N N N N N N 6.048  13.544 -4.557  7.236  -1.086 2.639  H20 N38 57 
N38 H21 H21 H 0 1 N N N N N N 5.722  12.040 -3.631  7.493  -2.837 2.828  H21 N38 58 
N38 H22 H22 H 0 1 N N N N N N 8.075  11.533 -3.489  8.372  -2.039 0.651  H22 N38 59 
N38 H23 H23 H 0 1 N N N N N N 7.833  13.237 -2.973  7.016  -3.168 0.417  H23 N38 60 
N38 H24 H24 H 0 1 N N N N N N 9.807  12.903 -4.476  6.788  -1.186 -1.056 H24 N38 61 
N38 H25 H25 H 0 1 N N N N N N 8.589  14.055 -5.121  6.825  -0.122 0.371  H25 N38 62 
N38 H26 H26 H 0 1 N N N N N N 11.478 14.244 -11.346 0.470  2.554  -1.831 H26 N38 63 
N38 H27 H27 H 0 1 N N N N N N 10.403 14.442 -13.584 2.057  4.406  0.002  H27 N38 64 
N38 H28 H28 H 0 1 N N N N N N 8.853  13.898 -12.857 0.639  4.895  -0.956 H28 N38 65 
N38 H29 H29 H 0 1 N N N N N N 9.723  11.696 -12.462 0.640  2.673  1.148  H29 N38 66 
N38 H30 H30 H 0 1 N N N N N N 12.128 10.022 -13.347 -3.060 4.020  0.821  H30 N38 67 
N38 H31 H31 H 0 1 N N N N N N 13.245 11.178 -14.149 -2.345 2.765  1.875  H31 N38 68 
N38 H32 H32 H 0 1 N N N N N N 12.053 11.550 -11.857 -1.393 3.760  -0.826 H32 N38 69 
N38 H33 H33 H 0 1 N N N N N N 12.551 12.841 -13.002 -1.271 2.117  -0.114 H33 N38 70 
N38 H34 H34 H 0 1 N N N N N N 10.429 16.394 -12.194 2.535  2.674  -3.258 H34 N38 71 
N38 H35 H35 H 0 1 N N N N N N 8.966  15.980 -11.237 1.676  4.229  -3.147 H35 N38 72 
N38 H36 H36 H 0 1 N N N N N N 5.653  7.101  -11.809 -4.306 -0.237 -0.638 H36 N38 73 
N38 H37 H37 H 0 1 N N N N N N 3.698  5.683  -12.294 -6.537 0.801  -0.685 H37 N38 74 
N38 H38 H38 H 0 1 N N N N N N 9.860  10.276 -7.438  2.960  -2.046 -1.964 H38 N38 75 
N38 H39 H39 H 0 1 N N N N N N 8.711  13.572 -10.328 2.714  2.068  -0.010 H39 N38 76 
N38 H40 H40 H 0 1 N N N N N N 11.288 10.823 -15.857 -1.815 5.273  2.585  H40 N38 77 
N38 H41 H41 H 0 1 N N N N N N 10.481 17.278 -10.046 4.017  4.475  -2.745 H41 N38 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N38 O30 C26 DOUB N N 1  
N38 N27 C26 SING N N 2  
N38 N27 C28 SING N N 3  
N38 C26 C25 SING N N 4  
N38 C28 C29 SING N N 5  
N38 C25 C29 SING N N 6  
N38 C25 C24 SING N N 7  
N38 C24 C23 SING N N 8  
N38 C37 C36 DOUB Y N 9  
N38 C37 C03 SING Y N 10 
N38 C23 C31 SING N N 11 
N38 C23 N22 SING N N 12 
N38 C36 C06 SING Y N 13 
N38 O02 C03 SING N N 14 
N38 O02 C01 SING N N 15 
N38 C31 O32 SING N N 16 
N38 C03 C04 DOUB Y N 17 
N38 O35 S11 DOUB N N 18 
N38 C06 O07 SING N N 19 
N38 C06 C05 DOUB Y N 20 
N38 N22 C21 SING N N 21 
N38 O07 C08 SING N N 22 
N38 C04 C05 SING Y N 23 
N38 C08 C09 SING N N 24 
N38 C09 C10 SING N N 25 
N38 O34 S11 DOUB N N 26 
N38 O33 C21 DOUB N N 27 
N38 C21 C13 SING N N 28 
N38 S11 C10 SING N N 29 
N38 S11 N12 SING N N 30 
N38 C13 N12 SING N N 31 
N38 C13 C14 SING N N 32 
N38 C14 C15 SING N N 33 
N38 C16 C15 SING N N 34 
N38 C16 C17 SING N N 35 
N38 C15 C20 SING N N 36 
N38 C17 C18 SING N N 37 
N38 C20 C19 SING N N 38 
N38 C18 C19 SING N N 39 
N38 C01 H1  SING N N 40 
N38 C01 H2  SING N N 41 
N38 C01 H3  SING N N 42 
N38 C04 H4  SING N N 43 
N38 C05 H5  SING N N 44 
N38 C08 H6  SING N N 45 
N38 C08 H7  SING N N 46 
N38 C09 H8  SING N N 47 
N38 C09 H9  SING N N 48 
N38 C10 H10 SING N N 49 
N38 C10 H11 SING N N 50 
N38 C13 H12 SING N N 51 
N38 C14 H13 SING N N 52 
N38 C14 H14 SING N N 53 
N38 C15 H15 SING N N 54 
N38 C16 H16 SING N N 55 
N38 C16 H17 SING N N 56 
N38 C17 H18 SING N N 57 
N38 C17 H19 SING N N 58 
N38 C18 H20 SING N N 59 
N38 C18 H21 SING N N 60 
N38 C19 H22 SING N N 61 
N38 C19 H23 SING N N 62 
N38 C20 H24 SING N N 63 
N38 C20 H25 SING N N 64 
N38 C23 H26 SING N N 65 
N38 C24 H27 SING N N 66 
N38 C24 H28 SING N N 67 
N38 C25 H29 SING N N 68 
N38 C28 H30 SING N N 69 
N38 C28 H31 SING N N 70 
N38 C29 H32 SING N N 71 
N38 C29 H33 SING N N 72 
N38 C31 H34 SING N N 73 
N38 C31 H35 SING N N 74 
N38 C36 H36 SING N N 75 
N38 C37 H37 SING N N 76 
N38 N12 H38 SING N N 77 
N38 N22 H39 SING N N 78 
N38 N27 H40 SING N N 79 
N38 O32 H41 SING N N 80 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N38 SMILES           ACDLabs              12.01 "COc3ccc(OCCCS(NC(CC1CCCCC1)C(NC(CO)CC2CCNC2=O)=O)(=O)=O)cc3"                                                                                                                                                      
N38 InChI            InChI                1.03  "InChI=1S/C26H41N3O7S/c1-35-22-8-10-23(11-9-22)36-14-5-15-37(33,34)29-24(16-19-6-3-2-4-7-19)26(32)28-21(18-30)17-20-12-13-27-25(20)31/h8-11,19-21,24,29-30H,2-7,12-18H2,1H3,(H,27,31)(H,28,32)/t20-,21-,24-/m0/s1" 
N38 InChIKey         InChI                1.03  JSFDYEDTWWEPLF-HFMPRLQTSA-N                                                                                                                                                                                        
N38 SMILES_CANONICAL CACTVS               3.385 "COc1ccc(OCCC[S](=O)(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)cc1"                                                                                                                                      
N38 SMILES           CACTVS               3.385 "COc1ccc(OCCC[S](=O)(=O)N[CH](CC2CCCCC2)C(=O)N[CH](CO)C[CH]3CCNC3=O)cc1"                                                                                                                                           
N38 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "COc1ccc(cc1)OCCCS(=O)(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)CO"                                                                                                                                       
N38 SMILES           "OpenEye OEToolkits" 2.0.6 "COc1ccc(cc1)OCCCS(=O)(=O)NC(CC2CCCCC2)C(=O)NC(CC3CCNC3=O)CO"                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N38 "SYSTEMATIC NAME" ACDLabs              12.01 "3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-{[3-(4-methoxyphenoxy)propyl]sulfonyl}-L-alaninamide"                          
N38 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-3-cyclohexyl-2-[3-(4-methoxyphenoxy)propylsulfonylamino]-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N38 "Create component" 2016-09-12 RCSB 
N38 "Modify formula"   2016-09-14 RCSB 
N38 "Initial release"  2016-11-23 RCSB 
N38 "Modify synonyms"  2020-06-05 PDBE 
N38 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      N38 
_pdbx_chem_comp_synonyms.name         "3-cyclohexyl-N~2~-{[3-(4-methoxyphenoxy)propyl]sulfonyl}-N-{(2S)-1-oxo-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-alaninamide (bound form)" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            N38 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C31 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
