data_N28
#

_chem_comp.id                                   N28
_chem_comp.name                                 "4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H26 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-07
_chem_comp.pdbx_modified_date                   2020-10-30
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       386.445
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    N28
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6TCY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N28  N1   N1   N  0  1  N  N  N  -6.095  -16.618  11.430   5.646  -4.821   0.409  N1   N28   1  
N28  C1   C1   C  0  1  N  N  N  -5.256  -15.402  11.451   6.213  -3.467   0.332  C1   N28   2  
N28  C2   C2   C  0  1  Y  N  N  -5.218  -14.653  10.135   5.096  -2.455   0.328  C2   N28   3  
N28  C3   C3   C  0  1  Y  N  N  -6.336  -13.948   9.717   4.627  -1.941   1.523  C3   N28   4  
N28  C4   C4   C  0  1  Y  N  N  -6.342  -13.254   8.520   3.604  -1.013   1.523  C4   N28   5  
N28  C5   C5   C  0  1  Y  N  N  -5.216  -13.244   7.711   3.047  -0.596   0.321  C5   N28   6  
N28  N2   N2   N  0  1  N  N  N  -5.270  -12.525   6.494   2.007   0.340   0.318  N2   N28   7  
N28  C6   C6   C  0  1  N  N  N  -4.603  -12.823   5.353   1.044   0.274  -0.622  C6   N28   8  
N28  O1   O1   O  0  1  N  N  N  -3.778  -13.741   5.307   1.024  -0.653  -1.408  O1   N28   9  
N28  N3   N3   N  0  1  N  N  N  -4.836  -12.081   4.230   0.102   1.237  -0.692  N3   N28  10  
N28  C7   C7   C  0  1  N  N  N  -4.332  -12.556   2.930   0.126   2.354   0.255  C7   N28  11  
N28  C8   C8   C  0  1  N  N  N  -5.354  -13.331   2.108   0.969   3.494  -0.322  C8   N28  12  
N28  C9   C9   C  0  1  N  N  N  -6.663  -13.610   2.846   0.993   4.661   0.667  C9   N28  13  
N28  C10  C10  C  0  1  N  N  N  -7.495  -14.724   2.243   1.836   5.800   0.090  C10  N28  14  
N28  O2   O2   O  0  1  N  N  N  -8.203  -14.286   1.101   1.859   6.890   1.014  O2   N28  15  
N28  C11  C11  C  0  1  N  N  N  -5.554  -10.800   4.213  -0.945   1.165  -1.714  C11  N28  16  
N28  C12  C12  C  0  1  Y  N  N  -4.715   -9.562   4.476  -2.125   0.401  -1.171  C12  N28  17  
N28  C13  C13  C  0  1  Y  N  N  -5.295   -8.312   4.324  -2.189  -0.972  -1.331  C13  N28  18  
N28  C14  C14  C  0  1  Y  N  N  -4.579   -7.158   4.573  -3.267  -1.677  -0.837  C14  N28  19  
N28  C15  C15  C  0  1  Y  N  N  -3.248   -7.203   4.949  -4.294  -1.002  -0.175  C15  N28  20  
N28  C16  C16  C  0  1  N  N  N  -2.646   -5.856   5.238  -5.452  -1.752   0.357  C16  N28  21  
N28  O3   O3   O  0  1  N  N  N  -3.327   -4.946   5.706  -5.511  -2.958   0.219  O3   N28  22  
N28  N4   N4   N  0  1  N  N  N  -1.368   -5.661   4.972  -6.442  -1.097   0.996  N4   N28  23  
N28  O4   O4   O  0  1  N  N  N  -0.988   -4.436   4.455  -7.551  -1.815   1.506  O4   N28  24  
N28  C17  C17  C  0  1  Y  N  N  -2.662   -8.453   5.119  -4.223   0.383  -0.017  C17  N28  25  
N28  C18  C18  C  0  1  Y  N  N  -3.381   -9.617   4.870  -3.137   1.075  -0.511  C18  N28  26  
N28  C19  C19  C  0  1  Y  N  N  -4.082  -13.926   8.127   3.521  -1.114  -0.877  C19  N28  27  
N28  C20  C20  C  0  1  Y  N  N  -4.088  -14.621   9.327   4.547  -2.038  -0.870  C20  N28  28  
N28  H1   H1   H  0  1  N  N  N  -6.071  -17.056  12.329   4.995  -4.983  -0.344  H1   N28  29  
N28  H27  H2   H  0  1  N  N  N  -7.037  -16.369  11.206   6.375  -5.518   0.413  H27  N28  30  
N28  H4   H4   H  0  1  N  N  N  -4.228  -15.696  11.711   6.857  -3.294   1.194  H4   N28  31  
N28  H3   H5   H  0  1  N  N  N  -5.650  -14.724  12.223   6.795  -3.369  -0.583  H3   N28  32  
N28  H5   H6   H  0  1  N  N  N  -7.220  -13.940  10.338   5.060  -2.266   2.458  H5   N28  33  
N28  H6   H7   H  0  1  N  N  N  -7.228  -12.717   8.214   3.237  -0.613   2.457  H6   N28  34  
N28  H7   H8   H  0  1  N  N  N  -5.859  -11.717   6.474   1.979   1.037   0.993  H7   N28  35  
N28  H9   H9   H  0  1  N  N  N  -3.468  -13.212   3.114  -0.891   2.706   0.428  H9   N28  36  
N28  H8   H10  H  0  1  N  N  N  -4.010  -11.682   2.345   0.561   2.022   1.198  H8   N28  37  
N28  H11  H11  H  0  1  N  N  N  -4.907  -14.294   1.820   1.986   3.142  -0.495  H11  N28  38  
N28  H10  H12  H  0  1  N  N  N  -5.584  -12.748   1.204   0.534   3.826  -1.264  H10  N28  39  
N28  H12  H13  H  0  1  N  N  N  -6.422  -13.884   3.884  -0.024   5.012   0.840  H12  N28  40  
N28  H13  H14  H  0  1  N  N  N  -7.265  -12.689   2.840   1.428   4.329   1.610  H13  N28  41  
N28  H15  H15  H  0  1  N  N  N  -8.215  -15.079   2.995   2.853   5.449  -0.083  H15  N28  42  
N28  H14  H16  H  0  1  N  N  N  -6.829  -15.551   1.955   1.401   6.132  -0.852  H14  N28  43  
N28  H16  H17  H  0  1  N  N  N  -8.713  -15.006   0.748   2.376   7.650   0.713  H16  N28  44  
N28  H17  H18  H  0  1  N  N  N  -6.018  -10.688   3.222  -1.258   2.173  -1.985  H17  N28  45  
N28  H18  H19  H  0  1  N  N  N  -6.339  -10.844   4.982  -0.557   0.656  -2.596  H18  N28  46  
N28  H19  H20  H  0  1  N  N  N  -6.324   -8.240   4.005  -1.394  -1.492  -1.843  H19  N28  47  
N28  H20  H21  H  0  1  N  N  N  -5.068   -6.200   4.472  -3.316  -2.749  -0.962  H20  N28  48  
N28  H21  H22  H  0  1  N  N  N  -0.693   -6.379   5.140  -6.395  -0.135   1.107  H21  N28  49  
N28  H22  H23  H  0  1  N  N  N  -1.677   -3.800   4.607  -8.209  -1.261   1.947  H22  N28  50  
N28  H23  H24  H  0  1  N  N  N  -1.636   -8.520   5.449  -5.015   0.910   0.494  H23  N28  51  
N28  H24  H25  H  0  1  N  N  N  -2.898  -10.576   4.984  -3.079   2.146  -0.386  H24  N28  52  
N28  H25  H26  H  0  1  N  N  N  -3.192  -13.916   7.515   3.090  -0.791  -1.813  H25  N28  53  
N28  H26  H27  H  0  1  N  N  N  -3.198  -15.147   9.639   4.917  -2.440  -1.802  H26  N28  54  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N28  O2   C10  SING  N  N   1  
N28  C8   C9   SING  N  N   2  
N28  C8   C7   SING  N  N   3  
N28  C10  C9   SING  N  N   4  
N28  C7   N3   SING  N  N   5  
N28  C11  N3   SING  N  N   6  
N28  C11  C12  SING  N  N   7  
N28  N3   C6   SING  N  N   8  
N28  C13  C12  DOUB  Y  N   9  
N28  C13  C14  SING  Y  N  10  
N28  O4   N4   SING  N  N  11  
N28  C12  C18  SING  Y  N  12  
N28  C14  C15  DOUB  Y  N  13  
N28  C18  C17  DOUB  Y  N  14  
N28  C15  C17  SING  Y  N  15  
N28  C15  C16  SING  N  N  16  
N28  N4   C16  SING  N  N  17  
N28  C16  O3   DOUB  N  N  18  
N28  O1   C6   DOUB  N  N  19  
N28  C6   N2   SING  N  N  20  
N28  N2   C5   SING  N  N  21  
N28  C5   C19  DOUB  Y  N  22  
N28  C5   C4   SING  Y  N  23  
N28  C19  C20  SING  Y  N  24  
N28  C4   C3   DOUB  Y  N  25  
N28  C20  C2   DOUB  Y  N  26  
N28  C3   C2   SING  Y  N  27  
N28  C2   C1   SING  N  N  28  
N28  N1   C1   SING  N  N  29  
N28  N1   H1   SING  N  N  30  
N28  N1   H27  SING  N  N  31  
N28  C1   H4   SING  N  N  32  
N28  C1   H3   SING  N  N  33  
N28  C3   H5   SING  N  N  34  
N28  C4   H6   SING  N  N  35  
N28  N2   H7   SING  N  N  36  
N28  C7   H9   SING  N  N  37  
N28  C7   H8   SING  N  N  38  
N28  C8   H11  SING  N  N  39  
N28  C8   H10  SING  N  N  40  
N28  C9   H12  SING  N  N  41  
N28  C9   H13  SING  N  N  42  
N28  C10  H15  SING  N  N  43  
N28  C10  H14  SING  N  N  44  
N28  O2   H16  SING  N  N  45  
N28  C11  H17  SING  N  N  46  
N28  C11  H18  SING  N  N  47  
N28  C13  H19  SING  N  N  48  
N28  C14  H20  SING  N  N  49  
N28  N4   H21  SING  N  N  50  
N28  O4   H22  SING  N  N  51  
N28  C17  H23  SING  N  N  52  
N28  C18  H24  SING  N  N  53  
N28  C19  H25  SING  N  N  54  
N28  C20  H26  SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N28  InChI             InChI                 1.03   "InChI=1S/C20H26N4O4/c21-13-15-5-9-18(10-6-15)22-20(27)24(11-1-2-12-25)14-16-3-7-17(8-4-16)19(26)23-28/h3-10,25,28H,1-2,11-14,21H2,(H,22,27)(H,23,26)"  
N28  InChIKey          InChI                 1.03   VTRGFHYHEAEHGS-UHFFFAOYSA-N  
N28  SMILES_CANONICAL  CACTVS                3.385  "NCc1ccc(NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO)cc1"  
N28  SMILES            CACTVS                3.385  "NCc1ccc(NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO)cc1"  
N28  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1CN)NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO"  
N28  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1CN)NC(=O)N(CCCCO)Cc2ccc(cc2)C(=O)NO"  
#
_pdbx_chem_comp_identifier.comp_id          N28
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-[[[4-(aminomethyl)phenyl]carbamoyl-(4-oxidanylbutyl)amino]methyl]-~{N}-oxidanyl-benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N28  "Create component"  2019-11-07  PDBE  
N28  "Initial release"   2020-11-04  RCSB  
##
