data_MI8
# 
_chem_comp.id                                    MI8 
_chem_comp.name                                  "methyl (3~{S},5~{R},6~{E},8~{Z},10~{R},12~{E},14~{E},16~{R})-3,16-bis(azanyl)-8,10,12-trimethyl-16-[(2~{S},4~{R},5~{S},6~{S})-5-methyl-4-oxidanyl-6-[(~{E})-prop-1-enyl]oxan-2-yl]-5-oxidanyl-hexadeca-6,8,12,14-tetraenoate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H48 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-23 
_chem_comp.pdbx_modified_date                    2023-10-20 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        504.702 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MI8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8HQ3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MI8 N1  N1  N 0 1 N N N 25.058 24.057 -27.394 4.943  2.279  -1.255 N1  MI8 1  
MI8 C2  C1  C 0 1 N N S 19.233 10.090 -31.575 -4.183 2.422  -0.672 C2  MI8 2  
MI8 C4  C2  C 0 1 N N N 20.835 12.477 -31.253 -5.888 1.153  1.279  C4  MI8 3  
MI8 C5  C3  C 0 1 N N N 18.005 9.182  -31.567 -3.948 2.886  -2.087 C5  MI8 4  
MI8 C6  C4  C 0 1 N N N 17.237 9.013  -30.491 -2.800 3.422  -2.418 C6  MI8 5  
MI8 C8  C5  C 0 1 N N N 17.881 12.093 -32.415 -6.609 2.960  -0.947 C8  MI8 6  
MI8 O3  O1  O 0 1 N N N 24.859 27.353 -26.165 4.888  4.028  0.891  O3  MI8 7  
MI8 C27 C6  C 0 1 N N N 23.846 26.764 -25.848 5.874  3.445  1.276  C27 MI8 8  
MI8 O4  O2  O 0 1 N N N 22.639 27.605 -25.729 6.768  4.079  2.050  O4  MI8 9  
MI8 C28 C7  C 0 1 N N N 22.635 28.817 -24.958 6.485  5.463  2.386  C28 MI8 10 
MI8 C26 C8  C 0 1 N N N 23.913 25.250 -25.573 6.100  2.007  0.886  C26 MI8 11 
MI8 C25 C9  C 0 1 N N S 23.736 24.321 -26.801 4.942  1.529  0.008  C25 MI8 12 
MI8 C24 C10 C 0 1 N N N 23.128 22.938 -26.469 5.107  0.036  -0.285 C24 MI8 13 
MI8 C23 C11 C 0 1 N N R 22.430 22.197 -27.638 3.887  -0.470 -1.057 C23 MI8 14 
MI8 O2  O3  O 0 1 N N N 23.082 20.940 -27.739 3.837  0.163  -2.337 O2  MI8 15 
MI8 C22 C12 C 0 1 N N N 20.945 21.950 -27.388 3.991  -1.962 -1.238 C22 MI8 16 
MI8 C21 C13 C 0 1 N N N 20.369 20.726 -27.421 3.050  -2.759 -0.743 C21 MI8 17 
MI8 C19 C14 C 0 1 N N N 18.912 20.491 -27.131 3.152  -4.216 -0.920 C19 MI8 18 
MI8 C20 C15 C 0 1 N N N 17.971 21.610 -26.778 4.259  -4.798 -1.762 C20 MI8 19 
MI8 C17 C16 C 0 1 N N N 18.300 19.276 -27.100 2.268  -5.019 -0.338 C17 MI8 20 
MI8 C16 C17 C 0 1 N N R 18.961 17.956 -27.435 1.084  -4.436 0.389  C16 MI8 21 
MI8 C18 C18 C 0 1 N N N 18.147 17.258 -28.518 1.201  -4.741 1.883  C18 MI8 22 
MI8 C15 C19 C 0 1 N N N 19.137 17.027 -26.233 -0.205 -5.054 -0.158 C15 MI8 23 
MI8 C13 C20 C 0 1 N N N 20.176 16.007 -26.652 -1.394 -4.383 0.480  C13 MI8 24 
MI8 C14 C21 C 0 1 N N N 21.640 16.314 -26.436 -1.902 -4.862 1.815  C14 MI8 25 
MI8 C12 C22 C 0 1 N N N 19.775 14.859 -27.237 -1.994 -3.370 -0.135 C12 MI8 26 
MI8 C11 C23 C 0 1 N N N 20.739 13.857 -27.705 -3.155 -2.715 0.488  C11 MI8 27 
MI8 C10 C24 C 0 1 N N N 20.309 12.777 -28.341 -3.755 -1.702 -0.126 C10 MI8 28 
MI8 C9  C25 C 0 1 N N R 21.245 11.714 -28.873 -4.944 -1.031 0.512  C9  MI8 29 
MI8 N   N2  N 0 1 N N N 21.163 10.548 -27.973 -5.166 -1.596 1.849  N   MI8 30 
MI8 C3  C26 C 0 1 N N S 20.838 11.293 -30.291 -4.680 0.471  0.631  C3  MI8 31 
MI8 C   C27 C 0 1 N N R 20.425 12.026 -32.651 -5.640 2.663  1.339  C   MI8 32 
MI8 O1  O4  O 0 1 N N N 21.507 11.231 -33.193 -4.508 2.929  2.170  O1  MI8 33 
MI8 C1  C28 C 0 1 N N S 19.123 11.215 -32.626 -5.371 3.182  -0.076 C1  MI8 34 
MI8 O   O5  O 0 1 N N N 19.526 10.686 -30.309 -4.466 1.022  -0.671 O   MI8 35 
MI8 C7  C29 C 0 1 N N N 16.049 8.088  -30.543 -2.565 3.886  -3.833 C7  MI8 36 
MI8 H1  H1  H 0 1 N N N 25.498 24.924 -27.629 5.807  2.141  -1.757 H1  MI8 37 
MI8 H2  H2  H 0 1 N N N 25.626 23.563 -26.736 4.149  2.027  -1.826 H2  MI8 38 
MI8 H4  H4  H 0 1 N N N 20.091 9.466  -31.867 -3.292 2.614  -0.074 H4  MI8 39 
MI8 H5  H5  H 0 1 N N N 21.844 12.913 -31.294 -6.780 0.953  0.686  H5  MI8 40 
MI8 H6  H6  H 0 1 N N N 20.123 13.234 -30.893 -6.027 0.765  2.288  H6  MI8 41 
MI8 H7  H7  H 0 1 N N N 17.748 8.654  -32.473 -4.727 2.777  -2.827 H7  MI8 42 
MI8 H8  H8  H 0 1 N N N 17.467 9.541  -29.578 -2.021 3.532  -1.678 H8  MI8 43 
MI8 H9  H9  H 0 1 N N N 16.981 11.460 -32.406 -7.455 3.497  -0.519 H9  MI8 44 
MI8 H10 H10 H 0 1 N N N 17.966 12.623 -31.455 -6.416 3.329  -1.954 H10 MI8 45 
MI8 H11 H11 H 0 1 N N N 17.806 12.825 -33.233 -6.837 1.895  -0.988 H11 MI8 46 
MI8 H12 H12 H 0 1 N N N 21.638 29.280 -25.007 6.420  6.053  1.472  H12 MI8 47 
MI8 H13 H13 H 0 1 N N N 22.881 28.586 -23.911 5.539  5.521  2.924  H13 MI8 48 
MI8 H14 H14 H 0 1 N N N 23.383 29.513 -25.365 7.285  5.855  3.015  H14 MI8 49 
MI8 H15 H15 H 0 1 N N N 23.121 25.005 -24.850 7.035  1.924  0.331  H15 MI8 50 
MI8 H16 H16 H 0 1 N N N 24.895 25.033 -25.128 6.154  1.392  1.784  H16 MI8 51 
MI8 H17 H17 H 0 1 N N N 23.091 24.825 -27.536 3.999  1.695  0.529  H17 MI8 52 
MI8 H18 H18 H 0 1 N N N 22.384 23.081 -25.671 6.005  -0.120 -0.882 H18 MI8 53 
MI8 H19 H19 H 0 1 N N N 23.941 22.294 -26.101 5.196  -0.511 0.654  H19 MI8 54 
MI8 H20 H20 H 0 1 N N N 22.554 22.781 -28.562 2.981  -0.234 -0.499 H20 MI8 55 
MI8 H21 H21 H 0 1 N N N 24.009 21.075 -27.895 4.613  -0.004 -2.889 H21 MI8 56 
MI8 H22 H22 H 0 1 N N N 20.317 22.802 -27.172 4.831  -2.384 -1.771 H22 MI8 57 
MI8 H23 H23 H 0 1 N N N 20.987 19.875 -27.668 2.211  -2.337 -0.210 H23 MI8 58 
MI8 H24 H24 H 0 1 N N N 16.963 21.203 -26.609 5.127  -4.997 -1.133 H24 MI8 59 
MI8 H25 H25 H 0 1 N N N 18.322 22.110 -25.863 3.918  -5.728 -2.217 H25 MI8 60 
MI8 H26 H26 H 0 1 N N N 17.939 22.336 -27.603 4.531  -4.089 -2.544 H26 MI8 61 
MI8 H27 H27 H 0 1 N N N 17.259 19.251 -26.813 2.399  -6.091 -0.385 H27 MI8 62 
MI8 H28 H28 H 0 1 N N N 19.959 18.169 -27.846 1.061  -3.357 0.239  H28 MI8 63 
MI8 H29 H29 H 0 1 N N N 18.619 16.297 -28.770 1.223  -5.821 2.033  H29 MI8 64 
MI8 H30 H30 H 0 1 N N N 17.125 17.080 -28.151 2.119  -4.301 2.273  H30 MI8 65 
MI8 H31 H31 H 0 1 N N N 18.109 17.894 -29.415 0.344  -4.319 2.409  H31 MI8 66 
MI8 H32 H32 H 0 1 N N N 19.487 17.594 -25.358 -0.245 -4.913 -1.239 H32 MI8 67 
MI8 H33 H33 H 0 1 N N N 18.187 16.529 -25.991 -0.222 -6.120 0.070  H33 MI8 68 
MI8 H34 H34 H 0 1 N N N 21.741 17.294 -25.947 -1.397 -4.318 2.613  H34 MI8 69 
MI8 H35 H35 H 0 1 N N N 22.087 15.538 -25.797 -2.976 -4.687 1.879  H35 MI8 70 
MI8 H36 H36 H 0 1 N N N 22.158 16.333 -27.406 -1.701 -5.929 1.919  H36 MI8 71 
MI8 H37 H37 H 0 1 N N N 18.719 14.673 -27.364 -1.630 -3.026 -1.092 H37 MI8 72 
MI8 H38 H38 H 0 1 N N N 21.795 13.999 -27.532 -3.519 -3.058 1.445  H38 MI8 73 
MI8 H39 H39 H 0 1 N N N 19.246 12.650 -28.486 -3.391 -1.358 -1.083 H39 MI8 74 
MI8 H40 H40 H 0 1 N N N 22.273 12.105 -28.892 -5.828 -1.197 -0.104 H40 MI8 75 
MI8 H41 H41 H 0 1 N N N 21.428 10.821 -27.048 -4.360 -1.456 2.440  H41 MI8 76 
MI8 H42 H42 H 0 1 N N N 20.225 10.201 -27.962 -5.996 -1.209 2.273  H42 MI8 77 
MI8 H44 H44 H 0 1 N N N 21.577 10.563 -30.652 -3.795 0.637  1.246  H44 MI8 78 
MI8 H45 H45 H 0 1 N N N 20.270 12.917 -33.277 -6.520 3.161  1.749  H45 MI8 79 
MI8 H46 H46 H 0 1 N N N 22.305 11.746 -33.202 -4.610 2.626  3.083  H46 MI8 80 
MI8 H47 H47 H 0 1 N N N 19.019 10.733 -33.609 -5.139 4.247  -0.036 H47 MI8 81 
MI8 H48 H48 H 0 1 N N N 15.545 8.082  -29.565 -2.668 3.041  -4.514 H48 MI8 82 
MI8 H49 H49 H 0 1 N N N 15.347 8.436  -31.315 -3.297 4.651  -4.091 H49 MI8 83 
MI8 H50 H50 H 0 1 N N N 16.387 7.070  -30.787 -1.561 4.301  -3.918 H50 MI8 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MI8 O1  C   SING N N 1  
MI8 C   C1  SING N N 2  
MI8 C   C4  SING N N 3  
MI8 C1  C8  SING N N 4  
MI8 C1  C2  SING N N 5  
MI8 C2  C5  SING N N 6  
MI8 C2  O   SING N N 7  
MI8 C5  C6  DOUB N E 8  
MI8 C4  C3  SING N N 9  
MI8 C7  C6  SING N N 10 
MI8 O   C3  SING N N 11 
MI8 C3  C9  SING N N 12 
MI8 C9  C10 SING N N 13 
MI8 C9  N   SING N N 14 
MI8 C18 C16 SING N N 15 
MI8 C10 C11 DOUB N E 16 
MI8 O2  C23 SING N N 17 
MI8 C11 C12 SING N N 18 
MI8 C23 C22 SING N N 19 
MI8 C23 C24 SING N N 20 
MI8 C16 C17 SING N N 21 
MI8 C16 C15 SING N N 22 
MI8 C21 C22 DOUB N E 23 
MI8 C21 C19 SING N N 24 
MI8 N1  C25 SING N N 25 
MI8 C12 C13 DOUB N E 26 
MI8 C19 C17 DOUB N Z 27 
MI8 C19 C20 SING N N 28 
MI8 C25 C24 SING N N 29 
MI8 C25 C26 SING N N 30 
MI8 C13 C14 SING N N 31 
MI8 C13 C15 SING N N 32 
MI8 O3  C27 DOUB N N 33 
MI8 C27 O4  SING N N 34 
MI8 C27 C26 SING N N 35 
MI8 O4  C28 SING N N 36 
MI8 N1  H1  SING N N 37 
MI8 N1  H2  SING N N 38 
MI8 C2  H4  SING N N 39 
MI8 C4  H5  SING N N 40 
MI8 C4  H6  SING N N 41 
MI8 C5  H7  SING N N 42 
MI8 C6  H8  SING N N 43 
MI8 C8  H9  SING N N 44 
MI8 C8  H10 SING N N 45 
MI8 C8  H11 SING N N 46 
MI8 C28 H12 SING N N 47 
MI8 C28 H13 SING N N 48 
MI8 C28 H14 SING N N 49 
MI8 C26 H15 SING N N 50 
MI8 C26 H16 SING N N 51 
MI8 C25 H17 SING N N 52 
MI8 C24 H18 SING N N 53 
MI8 C24 H19 SING N N 54 
MI8 C23 H20 SING N N 55 
MI8 O2  H21 SING N N 56 
MI8 C22 H22 SING N N 57 
MI8 C21 H23 SING N N 58 
MI8 C20 H24 SING N N 59 
MI8 C20 H25 SING N N 60 
MI8 C20 H26 SING N N 61 
MI8 C17 H27 SING N N 62 
MI8 C16 H28 SING N N 63 
MI8 C18 H29 SING N N 64 
MI8 C18 H30 SING N N 65 
MI8 C18 H31 SING N N 66 
MI8 C15 H32 SING N N 67 
MI8 C15 H33 SING N N 68 
MI8 C14 H34 SING N N 69 
MI8 C14 H35 SING N N 70 
MI8 C14 H36 SING N N 71 
MI8 C12 H37 SING N N 72 
MI8 C11 H38 SING N N 73 
MI8 C10 H39 SING N N 74 
MI8 C9  H40 SING N N 75 
MI8 N   H41 SING N N 76 
MI8 N   H42 SING N N 77 
MI8 C3  H44 SING N N 78 
MI8 C   H45 SING N N 79 
MI8 O1  H46 SING N N 80 
MI8 C1  H47 SING N N 81 
MI8 C7  H48 SING N N 82 
MI8 C7  H49 SING N N 83 
MI8 C7  H50 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MI8 InChI            InChI                1.06  "InChI=1S/C29H48N2O5/c1-7-9-27-22(5)26(33)18-28(36-27)25(31)11-8-10-19(2)14-21(4)15-20(3)12-13-24(32)16-23(30)17-29(34)35-6/h7-13,15,21-28,32-33H,14,16-18,30-31H2,1-6H3/b9-7+,11-8+,13-12+,19-10+,20-15-/t21-,22+,23+,24+,25-,26-,27+,28+/m1/s1" 
MI8 InChIKey         InChI                1.06  PLLUXUKFSITXBR-HOMQWXGGSA-N                                                                                                                                                                                                                       
MI8 SMILES_CANONICAL CACTVS               3.385 "COC(=O)C[C@@H](N)C[C@@H](O)/C=C/C(C)=C\[C@H](C)C/C(C)=C/C=C/[C@@H](N)[C@@H]1C[C@@H](O)[C@H](C)[C@@H](O1)\C=C\C"                                                                                                                                  
MI8 SMILES           CACTVS               3.385 "COC(=O)C[CH](N)C[CH](O)C=CC(C)=C[CH](C)CC(C)=CC=C[CH](N)[CH]1C[CH](O)[CH](C)[CH](O1)C=CC"                                                                                                                                                        
MI8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C=C/[C@H]1[C@H]([C@@H](C[C@H](O1)[C@@H](/C=C/C=C(\C)/C[C@@H](C)/C=C(/C)\C=C\[C@@H](C[C@@H](CC(=O)OC)N)O)N)O)C"                                                                                                                                 
MI8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC=CC1C(C(CC(O1)C(C=CC=C(C)CC(C)C=C(C)C=CC(CC(CC(=O)OC)N)O)N)O)C"                                                                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           MI8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methyl (3~{S},5~{R},6~{E},8~{Z},10~{R},12~{E},14~{E},16~{R})-3,16-bis(azanyl)-8,10,12-trimethyl-16-[(2~{S},4~{R},5~{S},6~{S})-5-methyl-4-oxidanyl-6-[(~{E})-prop-1-enyl]oxan-2-yl]-5-oxidanyl-hexadeca-6,8,12,14-tetraenoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MI8 "Create component" 2022-12-23 PDBJ 
MI8 "Initial release"  2023-10-25 RCSB 
# 
