data_KD8
#

_chem_comp.id                                   KD8
_chem_comp.name                                 "6,7-dimethyl-2-sulfanylidene-1~{H}-pteridin-4-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H8 N4 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-05-14
_chem_comp.pdbx_modified_date                   2020-04-10
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       208.240
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KD8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RP7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KD8  N1   N1  N  0  1  N  N  N  -21.460  2.689  20.812   1.171   1.156  -0.002  N1   KD8   1  
KD8  N3   N2  N  0  1  N  N  N  -23.439  1.418  20.724   2.070  -1.025   0.001  N3   KD8   2  
KD8  C4   C1  C  0  1  N  N  N  -24.058  2.325  21.503   0.845  -1.596   0.001  C4   KD8   3  
KD8  C6   C2  C  0  1  Y  N  N  -23.265  5.458  23.186  -2.597  -0.368  -0.002  C6   KD8   4  
KD8  C7   C3  C  0  1  Y  N  N  -21.956  5.614  22.818  -2.391   1.005   0.002  C7   KD8   5  
KD8  C2   C4  C  0  1  N  N  N  -22.119  1.573  20.361   2.214   0.309  -0.000  C2   KD8   6  
KD8  C4A  C5  C  0  1  Y  N  N  -23.380  3.426  21.951  -0.338  -0.711  -0.007  C4A  KD8   7  
KD8  C8A  C6  C  0  1  Y  N  N  -22.064  3.601  21.592  -0.127   0.679  -0.002  C8A  KD8   8  
KD8  CAK  C7  C  0  1  N  N  N  -23.967  6.482  24.065  -4.002  -0.915  -0.002  CAK  KD8   9  
KD8  CAL  C8  C  0  1  N  N  N  -21.110  6.801  23.268  -3.575   1.938   0.006  CAL  KD8  10  
KD8  N5   N3  N  0  1  Y  N  N  -23.943  4.378  22.752  -1.571  -1.197  -0.007  N5   KD8  11  
KD8  N8   N4  N  0  1  Y  N  N  -21.392  4.693  22.037  -1.167   1.500   0.002  N8   KD8  12  
KD8  O4   O1  O  0  1  N  N  N  -25.398  2.116  21.838   0.720  -2.805   0.008  O4   KD8  13  
KD8  S2   S1  S  0  1  N  N  N  -21.302  0.374  19.329   3.797   0.961  -0.001  S2   KD8  14  
KD8  H1   H1  H  0  1  N  N  N  -20.504  2.827  20.553   1.330   2.112   0.001  H1   KD8  15  
KD8  H2   H2  H  0  1  N  N  N  -23.946  0.618  20.403   2.859  -1.590   0.007  H2   KD8  16  
KD8  H3   H3  H  0  1  N  N  N  -25.008  6.169  24.233  -4.341  -1.044  -1.030  H3   KD8  17  
KD8  H4   H4  H  0  1  N  N  N  -23.446  6.555  25.031  -4.016  -1.878   0.509  H4   KD8  18  
KD8  H5   H5  H  0  1  N  N  N  -23.955  7.463  23.567  -4.663  -0.220   0.515  H5   KD8  19  
KD8  H6   H6  H  0  1  N  N  N  -20.096  6.709  22.851  -3.859   2.160   1.035  H6   KD8  20  
KD8  H7   H7  H  0  1  N  N  N  -21.569  7.735  22.911  -3.310   2.863  -0.505  H7   KD8  21  
KD8  H8   H8  H  0  1  N  N  N  -21.054  6.816  24.366  -4.412   1.466  -0.507  H8   KD8  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KD8  S2   C2   DOUB  N  N   1  
KD8  C2   N3   SING  N  N   2  
KD8  C2   N1   SING  N  N   3  
KD8  N3   C4   SING  N  N   4  
KD8  N1   C8A  SING  N  N   5  
KD8  C4   O4   DOUB  N  N   6  
KD8  C4   C4A  SING  N  N   7  
KD8  C8A  C4A  DOUB  Y  N   8  
KD8  C8A  N8   SING  Y  N   9  
KD8  C4A  N5   SING  Y  N  10  
KD8  N8   C7   DOUB  Y  N  11  
KD8  N5   C6   DOUB  Y  N  12  
KD8  C7   C6   SING  Y  N  13  
KD8  C7   CAL  SING  N  N  14  
KD8  C6   CAK  SING  N  N  15  
KD8  N1   H1   SING  N  N  16  
KD8  N3   H2   SING  N  N  17  
KD8  CAK  H3   SING  N  N  18  
KD8  CAK  H4   SING  N  N  19  
KD8  CAK  H5   SING  N  N  20  
KD8  CAL  H6   SING  N  N  21  
KD8  CAL  H7   SING  N  N  22  
KD8  CAL  H8   SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KD8  InChI             InChI                 1.03   "InChI=1S/C8H8N4OS/c1-3-4(2)10-6-5(9-3)7(13)12-8(14)11-6/h1-2H3,(H2,10,11,12,13,14)"  
KD8  InChIKey          InChI                 1.03   FMPVXDGAZOSEMT-UHFFFAOYSA-N  
KD8  SMILES_CANONICAL  CACTVS                3.385  "Cc1nc2NC(=S)NC(=O)c2nc1C"  
KD8  SMILES            CACTVS                3.385  "Cc1nc2NC(=S)NC(=O)c2nc1C"  
KD8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "Cc1c(nc2c(n1)C(=O)NC(=S)N2)C"  
KD8  SMILES            "OpenEye OEToolkits"  2.0.7  "Cc1c(nc2c(n1)C(=O)NC(=S)N2)C"  
#
_pdbx_chem_comp_identifier.comp_id          KD8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "6,7-dimethyl-2-sulfanylidene-1~{H}-pteridin-4-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KD8  "Create component"  2019-05-14  PDBE  
KD8  "Initial release"   2020-04-15  RCSB  
##
