data_K38
#

_chem_comp.id                                   K38
_chem_comp.name                                 "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynylamino]methyl]oxolane-3,4-diol"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H27 N11 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-04-16
_chem_comp.pdbx_modified_date                   2020-02-14
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       569.530
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K38
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6RGB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K38  N1     N1   N  0  1  Y  N  N  19.493   4.158   7.723  -8.177   2.325   1.786  N1     K38   1  
K38  C2     C1   C  0  1  Y  N  N  19.864   5.287   8.329  -7.713   1.176   2.243  C2     K38   2  
K38  C4     C2   C  0  1  Y  N  N  17.824   6.161   8.198  -6.115   1.045   0.596  C4     K38   3  
K38  C5     C3   C  0  1  Y  N  N  17.386   5.042   7.564  -6.572   2.265   0.070  C5     K38   4  
K38  C6     C4   C  0  1  Y  N  N  18.264   4.008   7.315  -7.646   2.904   0.714  C6     K38   5  
K38  "C1'"  C5   C  0  1  N  N  R  19.310   9.247  13.874   4.554  -0.842   0.920  "C1'"  K38   6  
K38  "C2'"  C6   C  0  1  N  N  R  18.314   9.099  14.970   3.333  -0.562   1.833  "C2'"  K38   7  
K38  "C3'"  C7   C  0  1  N  N  S  18.341   7.608  14.973   2.798  -1.989   2.106  "C3'"  K38   8  
K38  "C4'"  C8   C  0  1  N  N  R  18.573   7.317  13.494   3.376  -2.836   0.956  "C4'"  K38   9  
K38  "C5'"  C9   C  0  1  N  N  N  17.364   6.703  12.864   2.238  -3.491   0.170  "C5'"  K38  10  
K38  C8     C10  C  0  1  Y  N  N  15.797   6.405   7.768  -4.928   1.601  -1.177  C8     K38  11  
K38  CAF    C11  C  0  1  N  N  R  16.859   8.258   8.949  -4.279  -0.569  -0.062  CAF    K38  12  
K38  CAG    C12  C  0  1  N  N  R  16.726   9.343   7.942  -4.941  -1.743  -0.817  CAG    K38  13  
K38  CAH    C13  C  0  1  N  N  S  15.455   9.987   8.398  -3.749  -2.536  -1.398  CAH    K38  14  
K38  CAI    C14  C  0  1  N  N  R  15.493   9.611   9.853  -2.508  -1.746  -0.926  CAI    K38  15  
K38  CAJ    C15  C  0  1  N  N  N  14.148   9.839  10.636  -1.432  -1.744  -2.014  CAJ    K38  16  
K38  CAL    C16  C  0  1  N  N  N  14.598  10.587  13.070   0.837  -1.072  -2.523  CAL    K38  17  
K38  CAM    C17  C  0  1  N  N  N  15.998  10.923  12.923   2.035  -0.414  -1.976  CAM    K38  18  
K38  CAN    C18  C  0  1  N  N  N  17.107  11.121  12.813   2.990   0.111  -1.540  CAN    K38  19  
K38  CAO    C19  C  0  1  Y  N  N  18.488  11.273  12.747   4.155   0.752  -1.008  CAO    K38  20  
K38  CAQ    C20  C  0  1  Y  N  N  20.541  11.026  12.916   5.899   1.204   0.275  CAQ    K38  21  
K38  CAS    C21  C  0  1  Y  N  N  22.730  11.406  12.687   7.763   2.290   1.068  CAS    K38  22  
K38  CAU    C22  C  0  1  Y  N  N  21.317  12.962  11.808   6.753   3.187  -0.803  CAU    K38  23  
K38  CAV    C23  C  0  1  Y  N  N  20.295  12.176  12.263   5.794   2.158  -0.753  CAV    K38  24  
K38  N3     N2   N  0  1  Y  N  N  19.068   6.248   8.569  -6.709   0.542   1.673  N3     K38  25  
K38  N6     N3   N  0  1  N  N  N  17.949   2.915   6.700  -8.139   4.108   0.242  N6     K38  26  
K38  N7     N4   N  0  1  Y  N  N  16.142   5.244   7.316  -5.805   2.547  -1.010  N7     K38  27  
K38  N9     N5   N  0  1  Y  N  N  16.830   6.981   8.303  -5.078   0.650  -0.211  N9     K38  28  
K38  NAK    N6   N  0  1  N  N  N  14.184   9.564  12.084  -0.219  -1.093  -1.503  NAK    K38  29  
K38  NAP    N7   N  0  1  Y  N  N  19.415  10.490  13.215   4.858   0.328   0.093  NAP    K38  30  
K38  NAR    N8   N  0  1  Y  N  N  21.775  10.662  13.114   6.891   1.308   1.153  NAR    K38  31  
K38  NAT    N9   N  0  1  Y  N  N  22.534  12.557  12.022   7.705   3.211   0.123  NAT    K38  32  
K38  NAW    N10  N  0  1  Y  N  N  19.030  12.273  12.194   4.718   1.830  -1.501  NAW    K38  33  
K38  NAX    N11  N  0  1  N  N  N  21.100  14.059  11.174   6.700   4.157  -1.789  NAX    K38  34  
K38  "O2'"  O1   O  0  1  N  N  N  18.780   9.651  16.159   3.739   0.072   3.047  "O2'"  K38  35  
K38  "O3'"  O2   O  0  1  N  N  N  19.472   7.178  15.608   3.272  -2.468   3.366  "O3'"  K38  36  
K38  "O4'"  O3   O  0  1  N  N  N  18.719   8.511  12.959   4.115  -1.947   0.101  "O4'"  K38  37  
K38  "O5'"  O4   O  0  1  N  N  N  16.182   7.422  13.063   2.785  -4.365  -0.820  "O5'"  K38  38  
K38  OBH    O5   O  0  1  N  N  N  15.740   8.335   9.690  -2.990  -0.405  -0.693  OBH    K38  39  
K38  OBI    O6   O  0  1  N  N  N  15.451  11.343   8.192  -3.727  -3.864  -0.872  OBI    K38  40  
K38  OBJ    O7   O  0  1  N  N  N  17.809  10.207   8.052  -5.692  -2.558   0.086  OBJ    K38  41  
K38  H1     H1   H  0  1  N  N  N  20.896   5.390   8.632  -8.174   0.740   3.117  H1     K38  42  
K38  H2     H2   H  0  1  N  N  N  20.292   8.861  14.185   5.421  -1.126   1.515  H2     K38  43  
K38  H3     H3   H  0  1  N  N  N  17.327   9.483  14.673   2.587   0.039   1.312  H3     K38  44  
K38  H4     H4   H  0  1  N  N  N  17.404   7.166  15.342   1.708  -2.000   2.081  H4     K38  45  
K38  H5     H5   H  0  1  N  N  N  19.451   6.666  13.367   4.039  -3.602   1.356  H5     K38  46  
K38  H6     H6   H  0  1  N  N  N  17.230   5.696  13.286   1.609  -4.063   0.852  H6     K38  47  
K38  H7     H7   H  0  1  N  N  N  17.542   6.626  11.781   1.640  -2.720  -0.316  H7     K38  48  
K38  H8     H8   H  0  1  N  N  N  14.805   6.829   7.710  -4.189   1.572  -1.964  H8     K38  49  
K38  H9     H9   H  0  1  N  N  N  17.776   8.389   9.542  -4.157  -0.815   0.992  H9     K38  50  
K38  H10    H10  H  0  1  N  N  N  16.616   8.930   6.928  -5.581  -1.371  -1.617  H10    K38  51  
K38  H11    H11  H  0  1  N  N  N  14.596   9.500   7.912  -3.798  -2.556  -2.486  H11    K38  52  
K38  H12    H12  H  0  1  N  N  N  16.305  10.150  10.363  -2.113  -2.175  -0.005  H12    K38  53  
K38  H13    H13  H  0  1  N  N  N  13.855  10.891  10.501  -1.202  -2.770  -2.299  H13    K38  54  
K38  H14    H14  H  0  1  N  N  N  13.384   9.186  10.189  -1.798  -1.199  -2.885  H14    K38  55  
K38  H15    H15  H  0  1  N  N  N  13.994  11.494  12.920   0.488  -0.522  -3.397  H15    K38  56  
K38  H16    H16  H  0  1  N  N  N  14.428  10.197  14.084   1.084  -2.094  -2.812  H16    K38  57  
K38  H17    H17  H  0  1  N  N  N  23.746  11.090  12.872   8.557   2.345   1.798  H17    K38  58  
K38  H18    H18  H  0  1  N  N  N  18.754   2.325   6.634  -7.744   4.520  -0.542  H18    K38  59  
K38  H19    H19  H  0  1  N  N  N  17.230   2.442   7.209  -8.881   4.539   0.694  H19    K38  60  
K38  H20    H20  H  0  1  N  N  N  13.257   9.289  12.339  -0.421  -0.161  -1.172  H20    K38  61  
K38  H22    H22  H  0  1  N  N  N  21.973  14.474  10.917   7.362   4.865  -1.809  H22    K38  62  
K38  H23    H23  H  0  1  N  N  N  20.567  13.868  10.350   6.000   4.129  -2.460  H23    K38  63  
K38  H24    H24  H  0  1  N  N  N  18.124   9.542  16.838   3.010   0.267   3.652  H24    K38  64  
K38  H25    H25  H  0  1  N  N  N  19.390   7.333  16.542   2.968  -3.358   3.589  H25    K38  65  
K38  H26    H26  H  0  1  N  N  N  15.462   6.973  12.636   2.119  -4.816  -1.357  H26    K38  66  
K38  H27    H27  H  0  1  N  N  N  14.628  11.707   8.495  -4.512  -4.386  -1.087  H27    K38  67  
K38  H28    H28  H  0  1  N  N  N  18.597   9.767   7.755  -6.080  -3.344  -0.323  H28    K38  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K38  N6     C6     SING  N  N   1  
K38  C6     C5     DOUB  Y  N   2  
K38  C6     N1     SING  Y  N   3  
K38  N7     C5     SING  Y  N   4  
K38  N7     C8     DOUB  Y  N   5  
K38  C5     C4     SING  Y  N   6  
K38  N1     C2     DOUB  Y  N   7  
K38  C8     N9     SING  Y  N   8  
K38  CAG    OBJ    SING  N  N   9  
K38  CAG    CAH    SING  N  N  10  
K38  CAG    CAF    SING  N  N  11  
K38  OBI    CAH    SING  N  N  12  
K38  C4     N9     SING  Y  N  13  
K38  C4     N3     DOUB  Y  N  14  
K38  N9     CAF    SING  N  N  15  
K38  C2     N3     SING  Y  N  16  
K38  CAH    CAI    SING  N  N  17  
K38  CAF    OBH    SING  N  N  18  
K38  OBH    CAI    SING  N  N  19  
K38  CAI    CAJ    SING  N  N  20  
K38  CAJ    NAK    SING  N  N  21  
K38  NAX    CAU    SING  N  N  22  
K38  CAU    NAT    DOUB  Y  N  23  
K38  CAU    CAV    SING  Y  N  24  
K38  NAT    CAS    SING  Y  N  25  
K38  NAK    CAL    SING  N  N  26  
K38  NAW    CAV    SING  Y  N  27  
K38  NAW    CAO    DOUB  Y  N  28  
K38  CAV    CAQ    DOUB  Y  N  29  
K38  CAS    NAR    DOUB  Y  N  30  
K38  CAO    CAN    SING  N  N  31  
K38  CAO    NAP    SING  Y  N  32  
K38  CAN    CAM    TRIP  N  N  33  
K38  "C5'"  "O5'"  SING  N  N  34  
K38  "C5'"  "C4'"  SING  N  N  35  
K38  CAQ    NAR    SING  Y  N  36  
K38  CAQ    NAP    SING  Y  N  37  
K38  CAM    CAL    SING  N  N  38  
K38  "O4'"  "C4'"  SING  N  N  39  
K38  "O4'"  "C1'"  SING  N  N  40  
K38  NAP    "C1'"  SING  N  N  41  
K38  "C4'"  "C3'"  SING  N  N  42  
K38  "C1'"  "C2'"  SING  N  N  43  
K38  "C2'"  "C3'"  SING  N  N  44  
K38  "C2'"  "O2'"  SING  N  N  45  
K38  "C3'"  "O3'"  SING  N  N  46  
K38  C2     H1     SING  N  N  47  
K38  "C1'"  H2     SING  N  N  48  
K38  "C2'"  H3     SING  N  N  49  
K38  "C3'"  H4     SING  N  N  50  
K38  "C4'"  H5     SING  N  N  51  
K38  "C5'"  H6     SING  N  N  52  
K38  "C5'"  H7     SING  N  N  53  
K38  C8     H8     SING  N  N  54  
K38  CAF    H9     SING  N  N  55  
K38  CAG    H10    SING  N  N  56  
K38  CAH    H11    SING  N  N  57  
K38  CAI    H12    SING  N  N  58  
K38  CAJ    H13    SING  N  N  59  
K38  CAJ    H14    SING  N  N  60  
K38  CAL    H15    SING  N  N  61  
K38  CAL    H16    SING  N  N  62  
K38  CAS    H17    SING  N  N  63  
K38  N6     H18    SING  N  N  64  
K38  N6     H19    SING  N  N  65  
K38  NAK    H20    SING  N  N  66  
K38  NAX    H22    SING  N  N  67  
K38  NAX    H23    SING  N  N  68  
K38  "O2'"  H24    SING  N  N  69  
K38  "O3'"  H25    SING  N  N  70  
K38  "O5'"  H26    SING  N  N  71  
K38  OBI    H27    SING  N  N  72  
K38  OBJ    H28    SING  N  N  73  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K38  InChI             InChI                 1.03   "InChI=1S/C23H27N11O7/c24-18-12-20(29-6-27-18)33(8-31-12)22-16(38)14(36)9(40-22)4-26-3-1-2-11-32-13-19(25)28-7-30-21(13)34(11)23-17(39)15(37)10(5-35)41-23/h6-10,14-17,22-23,26,35-39H,3-5H2,(H2,24,27,29)(H2,25,28,30)/t9-,10-,14-,15-,16-,17-,22-,23-/m1/s1"  
K38  InChIKey          InChI                 1.03   CGSYXPCXDPYUKS-MKWZPUSRSA-N  
K38  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CNCC#Cc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CO)[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O"  
K38  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CNCC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CO)[CH](O)[CH]6O)[CH](O)[CH]3O"  
K38  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CNCC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CO)O)O)N)O)O)N"  
K38  SMILES            "OpenEye OEToolkits"  2.0.7  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CNCC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CO)O)O)N)O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          K38
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynylamino]methyl]oxolane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K38  "Create component"  2019-04-16  RCSB  
K38  "Initial release"   2020-02-19  RCSB  
##
