data_JT8
#

_chem_comp.id                                   JT8
_chem_comp.name                                 "(3~{S},7~{S},8~{S})-7-oxidanyl-8-(phenylmethyl)-3-(pyridin-2-ylmethyl)-1,4,9-triazacyclotricosane-2,5,10-trione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C33 H48 N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-03-26
_chem_comp.pdbx_modified_date                   2021-04-02
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       564.759
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JT8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6R61
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JT8  C4   C1   C  0  1  Y  N  N   -9.875  -14.131   4.073   0.576  -4.433   0.732  C4   JT8   1  
JT8  C14  C2   C  0  1  Y  N  N   -8.638  -14.922  14.214   6.388   0.324  -0.692  C14  JT8   2  
JT8  C5   C3   C  0  1  Y  N  N   -8.978  -15.196   3.868  -0.454  -3.524   0.890  C5   JT8   3  
JT8  C6   C4   C  0  1  N  N  N   -8.632  -16.177   4.971  -0.182  -2.047   0.761  C6   JT8   4  
JT8  C11  C5   C  0  1  N  N  S   -7.885  -14.741  10.826   3.155   1.482   0.316  C11  JT8   5  
JT8  C7   C6   C  0  1  N  N  S   -7.383  -15.803   5.801  -0.228  -1.648  -0.715  C7   JT8   6  
JT8  C8   C7   C  0  1  N  N  S   -7.159  -16.837   6.920   0.890  -2.364  -1.475  C8   JT8   7  
JT8  C9   C8   C  0  1  N  N  N   -6.099  -16.419   7.939   2.234  -2.059  -0.811  C9   JT8   8  
JT8  C10  C9   C  0  1  N  N  N   -6.611  -15.307   8.783   2.466  -0.570  -0.806  C10  JT8   9  
JT8  C12  C10  C  0  1  N  N  N   -6.713  -14.161  11.646   1.949   2.200  -0.232  C12  JT8  10  
JT8  C13  C11  C  0  1  N  N  N   -8.897  -15.430  11.753   4.373   1.795  -0.555  C13  JT8  11  
JT8  N1   N1   N  0  1  N  N  N   -7.407  -15.664   9.807   2.912   0.038   0.311  N1   JT8  12  
JT8  N2   N2   N  0  1  N  N  N   -6.778  -12.852  11.988   1.656   3.447   0.245  N2   JT8  13  
JT8  C3   C12  C  0  1  Y  N  N  -10.175  -13.267   3.017   0.326  -5.787   0.845  C3   JT8  14  
JT8  O2   O1   O  0  1  N  N  N   -5.819  -14.875  12.004   1.252   1.682  -1.078  O2   JT8  15  
JT8  C15  C13  C  0  1  Y  N  N   -9.237  -14.614  12.986   5.603   1.178   0.060  C15  JT8  16  
JT8  C33  C14  C  0  1  Y  N  N   -8.927  -14.162  15.366   7.517  -0.238  -0.117  C33  JT8  17  
JT8  C32  C15  C  0  1  Y  N  N   -9.837  -13.110  15.285   7.819   0.085   1.197  C32  JT8  18  
JT8  C31  C16  C  0  1  Y  N  N  -10.429  -12.828  14.062   6.990   0.951   1.885  C31  JT8  19  
JT8  N15  N3   N  0  1  Y  N  N  -10.158  -13.558  12.893   5.918   1.459   1.309  N15  JT8  20  
JT8  O1   O2   O  0  1  N  N  N   -6.300  -14.141   8.601   2.253   0.081  -1.807  O1   JT8  21  
JT8  O8   O3   O  0  1  N  N  N   -6.761  -18.094   6.340   0.913  -1.909  -2.829  O8   JT8  22  
JT8  C29  C17  C  0  1  N  N  N   -5.933  -12.152  12.934   0.463   4.090  -0.351  C29  JT8  23  
JT8  C28  C18  C  0  1  N  N  N   -5.325  -10.889  12.316  -0.540   4.389   0.765  C28  JT8  24  
JT8  C27  C19  C  0  1  N  N  N   -4.478  -11.153  11.049  -1.443   5.549   0.341  C27  JT8  25  
JT8  C26  C20  C  0  1  N  N  N   -2.946  -11.213  11.201  -2.859   5.314   0.873  C26  JT8  26  
JT8  C25  C21  C  0  1  N  N  N   -2.279  -12.599  10.945  -3.822   5.135  -0.302  C25  JT8  27  
JT8  C24  C22  C  0  1  N  N  N   -2.600  -13.322   9.641  -5.076   4.398   0.174  C24  JT8  28  
JT8  C23  C23  C  0  1  N  N  N   -1.403  -13.552   8.715  -4.808   2.892   0.189  C23  JT8  29  
JT8  C22  C24  C  0  1  N  N  N   -1.713  -14.685   7.750  -6.139   2.137   0.185  C22  JT8  30  
JT8  C21  C25  C  0  1  N  N  N   -0.868  -14.674   6.454  -5.959   0.783   0.874  C21  JT8  31  
JT8  C20  C26  C  0  1  N  N  N   -1.460  -13.880   5.293  -5.636  -0.284  -0.174  C20  JT8  32  
JT8  C19  C27  C  0  1  N  N  N   -2.799  -14.502   4.960  -5.919  -1.671   0.406  C19  JT8  33  
JT8  C18  C28  C  0  1  N  N  N   -3.331  -14.023   3.632  -4.827  -2.644  -0.042  C18  JT8  34  
JT8  C17  C29  C  0  1  N  N  N   -4.627  -14.772   3.345  -3.999  -2.005  -1.158  C17  JT8  35  
JT8  C16  C30  C  0  1  N  N  N   -5.656  -14.606   4.461  -2.640  -1.632  -0.624  C16  JT8  36  
JT8  O3   O4   O  0  1  N  N  N   -5.982  -13.522   4.897  -2.538  -0.975   0.391  O3   JT8  37  
JT8  N    N4   N  0  1  N  N  N   -6.246  -15.727   4.897  -1.528  -2.041  -1.294  N    JT8  38  
JT8  C    C31  C  0  1  Y  N  N   -8.407  -15.368   2.591  -1.733  -3.970   1.166  C    JT8  39  
JT8  C2   C32  C  0  1  Y  N  N   -9.596  -13.453   1.756  -0.953  -6.233   1.121  C2   JT8  40  
JT8  C1   C33  C  0  1  Y  N  N   -8.714  -14.500   1.546  -1.982  -5.324   1.285  C1   JT8  41  
JT8  H1   H1   H  0  1  N  N  N  -10.329  -13.982   5.042   1.575  -4.084   0.516  H1   JT8  42  
JT8  H2   H2   H  0  1  N  N  N   -7.948  -15.750  14.279   6.122   0.094  -1.714  H2   JT8  43  
JT8  H3   H3   H  0  1  N  N  N   -9.491  -16.240   5.655  -0.939  -1.489   1.312  H3   JT8  44  
JT8  H4   H4   H  0  1  N  N  N   -8.456  -17.161   4.511   0.804  -1.822   1.168  H4   JT8  45  
JT8  H5   H5   H  0  1  N  N  N   -8.397  -13.901  10.333   3.344   1.814   1.336  H5   JT8  46  
JT8  H6   H6   H  0  1  N  N  N   -7.554  -14.820   6.263  -0.100  -0.569  -0.805  H6   JT8  47  
JT8  H7   H7   H  0  1  N  N  N   -8.112  -16.970   7.454   0.711  -3.439  -1.456  H7   JT8  48  
JT8  H8   H8   H  0  1  N  N  N   -5.852  -17.278   8.580   2.226  -2.429   0.214  H8   JT8  49  
JT8  H9   H9   H  0  1  N  N  N   -5.195  -16.086   7.408   3.033  -2.549  -1.367  H9   JT8  50  
JT8  H10  H10  H  0  1  N  N  N   -9.823  -15.609  11.187   4.222   1.385  -1.554  H10  JT8  51  
JT8  H11  H11  H  0  1  N  N  N   -8.474  -16.392  12.077   4.504   2.875  -0.622  H11  JT8  52  
JT8  H12  H12  H  0  1  N  N  N   -7.687  -16.622   9.872   3.071  -0.482   1.114  H12  JT8  53  
JT8  H13  H13  H  0  1  N  N  N   -7.487  -12.309  11.538   2.193   3.881   0.927  H13  JT8  54  
JT8  H14  H14  H  0  1  N  N  N  -10.860  -12.447   3.175   1.129  -6.498   0.717  H14  JT8  55  
JT8  H15  H15  H  0  1  N  N  N   -8.446  -14.394  16.305   8.146  -0.913  -0.679  H15  JT8  56  
JT8  H16  H16  H  0  1  N  N  N  -10.078  -12.524  16.160   8.690  -0.335   1.677  H16  JT8  57  
JT8  H17  H17  H  0  1  N  N  N  -11.131  -12.009  14.006   7.219   1.209   2.908  H17  JT8  58  
JT8  H18  H18  H  0  1  N  N  N   -6.623  -18.732   7.030   1.599  -2.322  -3.372  H18  JT8  59  
JT8  H19  H19  H  0  1  N  N  N   -6.536  -11.867  13.809   0.754   5.019  -0.841  H19  JT8  60  
JT8  H20  H20  H  0  1  N  N  N   -5.120  -12.822  13.251   0.012   3.418  -1.081  H20  JT8  61  
JT8  H21  H21  H  0  1  N  N  N   -4.681  -10.411  13.069  -1.149   3.505   0.953  H21  JT8  62  
JT8  H22  H22  H  0  1  N  N  N   -6.145  -10.206  12.048  -0.002   4.661   1.673  H22  JT8  63  
JT8  H23  H23  H  0  1  N  N  N   -4.704  -10.350  10.332  -1.053   6.482   0.748  H23  JT8  64  
JT8  H24  H24  H  0  1  N  N  N   -4.803  -12.118  10.634  -1.470   5.611  -0.747  H24  JT8  65  
JT8  H25  H25  H  0  1  N  N  N   -2.699  -10.907  12.228  -2.870   4.417   1.492  H25  JT8  66  
JT8  H26  H26  H  0  1  N  N  N   -2.511  -10.495  10.490  -3.170   6.171   1.470  H26  JT8  67  
JT8  H27  H27  H  0  1  N  N  N   -2.579  -13.263  11.769  -4.101   6.112  -0.695  H27  JT8  68  
JT8  H28  H28  H  0  1  N  N  N   -1.190  -12.448  10.975  -3.335   4.554  -1.086  H28  JT8  69  
JT8  H29  H29  H  0  1  N  N  N   -3.344  -12.724   9.094  -5.333   4.732   1.179  H29  JT8  70  
JT8  H30  H30  H  0  1  N  N  N   -3.030  -14.303   9.892  -5.902   4.614  -0.504  H30  JT8  71  
JT8  H31  H31  H  0  1  N  N  N   -0.520  -13.815   9.317  -4.232   2.617  -0.694  H31  JT8  72  
JT8  H32  H32  H  0  1  N  N  N   -1.199  -12.633   8.146  -4.245   2.632   1.086  H32  JT8  73  
JT8  H33  H33  H  0  1  N  N  N   -2.774  -14.616   7.469  -6.889   2.720   0.720  H33  JT8  74  
JT8  H34  H34  H  0  1  N  N  N   -1.533  -15.638   8.270  -6.465   1.982  -0.843  H34  JT8  75  
JT8  H35  H35  H  0  1  N  N  N   -0.741  -15.715   6.123  -5.141   0.846   1.592  H35  JT8  76  
JT8  H36  H36  H  0  1  N  N  N    0.115  -14.243   6.694  -6.878   0.515   1.394  H36  JT8  77  
JT8  H37  H37  H  0  1  N  N  N   -0.792  -13.934   4.421  -6.257  -0.126  -1.056  H37  JT8  78  
JT8  H38  H38  H  0  1  N  N  N   -1.596  -12.829   5.586  -4.585  -0.213  -0.452  H38  JT8  79  
JT8  H39  H39  H  0  1  N  N  N   -3.519  -14.236   5.748  -5.930  -1.613   1.495  H39  JT8  80  
JT8  H40  H40  H  0  1  N  N  N   -2.683  -15.595   4.923  -6.887  -2.023   0.051  H40  JT8  81  
JT8  H41  H41  H  0  1  N  N  N   -2.597  -14.230   2.839  -4.179  -2.878   0.803  H41  JT8  82  
JT8  H42  H42  H  0  1  N  N  N   -3.527  -12.942   3.677  -5.287  -3.561  -0.410  H42  JT8  83  
JT8  H43  H43  H  0  1  N  N  N   -5.057  -14.388   2.408  -3.885  -2.715  -1.978  H43  JT8  84  
JT8  H44  H44  H  0  1  N  N  N   -4.399  -15.842   3.232  -4.505  -1.110  -1.520  H44  JT8  85  
JT8  H45  H45  H  0  1  N  N  N   -5.869  -16.594   4.570  -1.587  -2.564  -2.109  H45  JT8  86  
JT8  H46  H46  H  0  1  N  N  N   -7.721  -16.185   2.420  -2.537  -3.260   1.289  H46  JT8  87  
JT8  H47  H47  H  0  1  N  N  N   -9.837  -12.780   0.947  -1.149  -7.292   1.209  H47  JT8  88  
JT8  H48  H48  H  0  1  N  N  N   -8.265  -14.643   0.574  -2.981  -5.673   1.501  H48  JT8  89  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JT8  C1   C2   DOUB  Y  N   1  
JT8  C1   C    SING  Y  N   2  
JT8  C2   C3   SING  Y  N   3  
JT8  C    C5   DOUB  Y  N   4  
JT8  C3   C4   DOUB  Y  N   5  
JT8  C17  C18  SING  N  N   6  
JT8  C17  C16  SING  N  N   7  
JT8  C18  C19  SING  N  N   8  
JT8  C5   C4   SING  Y  N   9  
JT8  C5   C6   SING  N  N  10  
JT8  C16  N    SING  N  N  11  
JT8  C16  O3   DOUB  N  N  12  
JT8  N    C7   SING  N  N  13  
JT8  C19  C20  SING  N  N  14  
JT8  C6   C7   SING  N  N  15  
JT8  C20  C21  SING  N  N  16  
JT8  C7   C8   SING  N  N  17  
JT8  O8   C8   SING  N  N  18  
JT8  C21  C22  SING  N  N  19  
JT8  C8   C9   SING  N  N  20  
JT8  C22  C23  SING  N  N  21  
JT8  C9   C10  SING  N  N  22  
JT8  O1   C10  DOUB  N  N  23  
JT8  C23  C24  SING  N  N  24  
JT8  C10  N1   SING  N  N  25  
JT8  C24  C25  SING  N  N  26  
JT8  N1   C11  SING  N  N  27  
JT8  C11  C12  SING  N  N  28  
JT8  C11  C13  SING  N  N  29  
JT8  C25  C26  SING  N  N  30  
JT8  C27  C26  SING  N  N  31  
JT8  C27  C28  SING  N  N  32  
JT8  C12  N2   SING  N  N  33  
JT8  C12  O2   DOUB  N  N  34  
JT8  C13  C15  SING  N  N  35  
JT8  N2   C29  SING  N  N  36  
JT8  C28  C29  SING  N  N  37  
JT8  N15  C15  DOUB  Y  N  38  
JT8  N15  C31  SING  Y  N  39  
JT8  C15  C14  SING  Y  N  40  
JT8  C31  C32  DOUB  Y  N  41  
JT8  C14  C33  DOUB  Y  N  42  
JT8  C32  C33  SING  Y  N  43  
JT8  C4   H1   SING  N  N  44  
JT8  C14  H2   SING  N  N  45  
JT8  C6   H3   SING  N  N  46  
JT8  C6   H4   SING  N  N  47  
JT8  C11  H5   SING  N  N  48  
JT8  C7   H6   SING  N  N  49  
JT8  C8   H7   SING  N  N  50  
JT8  C9   H8   SING  N  N  51  
JT8  C9   H9   SING  N  N  52  
JT8  C13  H10  SING  N  N  53  
JT8  C13  H11  SING  N  N  54  
JT8  N1   H12  SING  N  N  55  
JT8  N2   H13  SING  N  N  56  
JT8  C3   H14  SING  N  N  57  
JT8  C33  H15  SING  N  N  58  
JT8  C32  H16  SING  N  N  59  
JT8  C31  H17  SING  N  N  60  
JT8  O8   H18  SING  N  N  61  
JT8  C29  H19  SING  N  N  62  
JT8  C29  H20  SING  N  N  63  
JT8  C28  H21  SING  N  N  64  
JT8  C28  H22  SING  N  N  65  
JT8  C27  H23  SING  N  N  66  
JT8  C27  H24  SING  N  N  67  
JT8  C26  H25  SING  N  N  68  
JT8  C26  H26  SING  N  N  69  
JT8  C25  H27  SING  N  N  70  
JT8  C25  H28  SING  N  N  71  
JT8  C24  H29  SING  N  N  72  
JT8  C24  H30  SING  N  N  73  
JT8  C23  H31  SING  N  N  74  
JT8  C23  H32  SING  N  N  75  
JT8  C22  H33  SING  N  N  76  
JT8  C22  H34  SING  N  N  77  
JT8  C21  H35  SING  N  N  78  
JT8  C21  H36  SING  N  N  79  
JT8  C20  H37  SING  N  N  80  
JT8  C20  H38  SING  N  N  81  
JT8  C19  H39  SING  N  N  82  
JT8  C19  H40  SING  N  N  83  
JT8  C18  H41  SING  N  N  84  
JT8  C18  H42  SING  N  N  85  
JT8  C17  H43  SING  N  N  86  
JT8  C17  H44  SING  N  N  87  
JT8  N    H45  SING  N  N  88  
JT8  C    H46  SING  N  N  89  
JT8  C2   H47  SING  N  N  90  
JT8  C1   H48  SING  N  N  91  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JT8  InChI             InChI                 1.03   "InChI=1S/C33H48N4O4/c38-30-25-32(40)37-29(24-27-19-14-16-21-34-27)33(41)35-22-15-9-7-5-3-1-2-4-6-8-13-20-31(39)36-28(30)23-26-17-11-10-12-18-26/h10-12,14,16-19,21,28-30,38H,1-9,13,15,20,22-25H2,(H,35,41)(H,36,39)(H,37,40)/t28-,29-,30-/m0/s1"  
JT8  InChIKey          InChI                 1.03   XVVTWLRLITWYAF-DTXPUJKBSA-N  
JT8  SMILES_CANONICAL  CACTVS                3.385  "O[C@H]1CC(=O)N[C@@H](Cc2ccccn2)C(=O)NCCCCCCCCCCCCCC(=O)N[C@H]1Cc3ccccc3"  
JT8  SMILES            CACTVS                3.385  "O[CH]1CC(=O)N[CH](Cc2ccccn2)C(=O)NCCCCCCCCCCCCCC(=O)N[CH]1Cc3ccccc3"  
JT8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)C[C@H]2[C@H](CC(=O)N[C@H](C(=O)NCCCCCCCCCCCCCC(=O)N2)Cc3ccccn3)O"  
JT8  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CC2C(CC(=O)NC(C(=O)NCCCCCCCCCCCCCC(=O)N2)Cc3ccccn3)O"  
#
_pdbx_chem_comp_identifier.comp_id          JT8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3~{S},7~{S},8~{S})-7-oxidanyl-8-(phenylmethyl)-3-(pyridin-2-ylmethyl)-1,4,9-triazacyclotricosane-2,5,10-trione"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JT8  "Create component"  2019-03-26  RCSB  
JT8  "Initial release"   2021-04-07  RCSB  
##
