data_IY8
# 
_chem_comp.id                                    IY8 
_chem_comp.name                                  "methoxy-[(~{E},3~{R})-3-[(2~{R})-1-methoxy-1,3-bis(oxidanylidene)butan-2-yl]tridec-11-enyl]phosphinous acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H35 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-04-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        390.451 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     IY8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZM1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
IY8 C12 C1  C 0 1 N N N N N N 22.204 66.328 -8.511  1.444   1.668  1.550  C12 IY8 1  
IY8 C10 C2  C 0 1 N N N N N N 18.595 67.906 -8.756  0.200   -0.656 0.515  C10 IY8 2  
IY8 C21 C3  C 0 1 N N N N N N 15.207 64.612 -8.488  -4.784  -0.978 0.667  C21 IY8 3  
IY8 C25 C4  C 0 1 N N N N N N 10.431 63.805 -10.107 -9.436  -1.444 -0.354 C25 IY8 4  
IY8 C23 C5  C 0 1 N N N N N N 12.751 64.439 -9.198  -7.276  -1.139 0.743  C23 IY8 5  
IY8 C19 C6  C 0 1 N N N N N N 16.362 66.790 -9.085  -2.292  -0.817 0.591  C19 IY8 6  
IY8 O05 O1  O 0 1 N N N N N N 19.486 71.497 -4.628  6.610   -0.553 -1.008 O05 IY8 7  
IY8 C15 C7  C 0 1 N N N N N N 18.300 72.301 -4.315  7.955   -0.990 -0.802 C15 IY8 8  
IY8 C09 C8  C 0 1 N N R N N N 20.870 66.826 -9.058  1.469   1.448  0.059  C09 IY8 9  
IY8 C14 C9  C 0 1 N N N N N N 22.196 65.253 -7.484  2.736   1.814  2.312  C14 IY8 10 
IY8 C13 C10 C 0 1 N N N N N N 21.164 67.577 -10.337 0.293   2.149  -0.571 C13 IY8 11 
IY8 C11 C11 C 0 1 N N N N N N 20.541 69.000 -7.643  2.680   -0.731 0.219  C11 IY8 12 
IY8 C16 C12 C 0 1 N N N N N N 21.657 67.236 -12.602 -1.025  2.801  -2.447 C16 IY8 13 
IY8 O04 O2  O 0 1 N N N N N N 23.239 66.723 -8.966  0.389   1.732  2.134  O04 IY8 14 
IY8 C18 C13 C 0 1 N N N N N N 17.852 66.665 -9.158  -1.105  -0.122 -0.079 C18 IY8 15 
IY8 O06 O3  O 0 1 N N N N N N 21.470 68.718 -10.392 -0.432  2.839  0.105  O06 IY8 16 
IY8 C20 C14 C 0 1 N N N N N N 15.618 65.567 -9.574  -3.597  -0.283 -0.003 C20 IY8 17 
IY8 C22 C15 C 0 1 N N N N N N 14.052 63.725 -8.877  -6.089  -0.444 0.073  C22 IY8 18 
IY8 C26 C16 C 0 1 N N N N N N 9.253  62.831 -10.039 -10.722 -0.918 -0.939 C26 IY8 19 
IY8 C24 C17 C 0 1 N N N N N N 11.564 63.510 -9.153  -8.561  -0.613 0.158  C24 IY8 20 
IY8 C03 C18 C 0 1 N N N N N N 19.936 69.443 -6.337  3.846   -0.239 -0.640 C03 IY8 21 
IY8 C08 C19 C 0 1 N N R N N N 19.951 67.652 -8.122  1.388   -0.051 -0.237 C08 IY8 22 
IY8 O02 O4  O 0 1 N N N N N N 20.951 66.826 -11.399 0.053   2.007  -1.884 O02 IY8 23 
IY8 O07 O5  O 0 1 N N N N N N 19.225 71.937 -7.170  5.172   -2.711 -0.581 O07 IY8 24 
IY8 P01 P1  P 0 1 N N N N N N 19.957 71.217 -6.063  5.357   -1.159 -0.199 P01 IY8 25 
IY8 H1  H1  H 0 1 N N N N N N 18.746 68.522 -9.655  0.259   -0.381 1.568  H1  IY8 26 
IY8 H2  H2  H 0 1 N N N N N N 17.976 68.458 -8.033  0.225   -1.741 0.421  H2  IY8 27 
IY8 H3  H3  H 0 1 N N N N N N 16.068 63.974 -8.240  -4.720  -2.053 0.496  H3  IY8 28 
IY8 H4  H4  H 0 1 N N N N N N 14.916 65.196 -7.602  -4.764  -0.779 1.738  H4  IY8 29 
IY8 H5  H5  H 0 1 N N N N N N 10.451 64.643 -10.788 -9.236  -2.505 -0.356 H5  IY8 30 
IY8 H6  H6  H 0 1 N N N N N N 12.824 64.871 -10.207 -7.212  -2.214 0.572  H6  IY8 31 
IY8 H7  H7  H 0 1 N N N N N N 12.599 65.244 -8.464  -7.256  -0.940 1.814  H7  IY8 32 
IY8 H8  H8  H 0 1 N N N N N N 16.056 67.650 -9.699  -2.227  -1.891 0.420  H8  IY8 33 
IY8 H9  H9  H 0 1 N N N N N N 16.081 66.970 -8.037  -2.272  -0.618 1.663  H9  IY8 34 
IY8 H10 H10 H 0 1 N N N N N N 18.171 72.356 -3.224  8.240   -0.813 0.235  H10 IY8 35 
IY8 H11 H11 H 0 1 N N N N N N 18.427 73.315 -4.721  8.028   -2.055 -1.022 H11 IY8 36 
IY8 H12 H12 H 0 1 N N N N N N 17.412 71.834 -4.766  8.622   -0.436 -1.462 H12 IY8 37 
IY8 H13 H13 H 0 1 N N N N N N 20.296 65.932 -9.342  2.395   1.850  -0.352 H13 IY8 38 
IY8 H14 H14 H 0 1 N N N N N N 23.229 64.945 -7.267  3.065   2.853  2.273  H14 IY8 39 
IY8 H15 H15 H 0 1 N N N N N N 21.725 65.629 -6.564  2.581   1.520  3.350  H15 IY8 40 
IY8 H16 H16 H 0 1 N N N N N N 21.627 64.390 -7.861  3.497   1.175  1.863  H16 IY8 41 
IY8 H17 H17 H 0 1 N N N N N N 21.627 68.887 -7.512  2.580   -1.811 0.111  H17 IY8 42 
IY8 H18 H18 H 0 1 N N N N N N 20.342 69.767 -8.406  2.871   -0.487 1.264  H18 IY8 43 
IY8 H19 H19 H 0 1 N N N N N N 21.412 66.548 -13.424 -1.961  2.548  -1.948 H19 IY8 44 
IY8 H20 H20 H 0 1 N N N N N N 21.353 68.257 -12.876 -0.811  3.859  -2.301 H20 IY8 45 
IY8 H21 H21 H 0 1 N N N N N N 22.741 67.214 -12.416 -1.113  2.591  -3.513 H21 IY8 46 
IY8 H22 H22 H 0 1 N N N N N N 18.162 65.846 -8.492  -1.169  0.953  0.092  H22 IY8 47 
IY8 H23 H23 H 0 1 N N N N N N 18.127 66.419 -10.194 -1.124  -0.321 -1.150 H23 IY8 48 
IY8 H24 H24 H 0 1 N N N N N N 14.711 65.903 -10.097 -3.616  -0.482 -1.074 H24 IY8 49 
IY8 H25 H25 H 0 1 N N N N N N 16.269 65.027 -10.278 -3.661  0.792  0.168  H25 IY8 50 
IY8 H26 H26 H 0 1 N N N N N N 13.861 63.034 -8.043  -6.153  0.630  0.244  H26 IY8 51 
IY8 H27 H27 H 0 1 N N N N N N 14.351 63.152 -9.767  -6.109  -0.643 -0.998 H27 IY8 52 
IY8 H28 H28 H 0 1 N N N N N N 8.486  63.131 -10.768 -11.281 -0.387 -0.168 H28 IY8 53 
IY8 H29 H29 H 0 1 N N N N N N 9.604  61.815 -10.273 -10.495 -0.236 -1.758 H29 IY8 54 
IY8 H30 H30 H 0 1 N N N N N N 8.823  62.846 -9.027  -11.318 -1.750 -1.313 H30 IY8 55 
IY8 H31 H31 H 0 1 N N N N N N 11.526 62.673 -8.471  -8.761  0.448  0.160  H31 IY8 56 
IY8 H32 H32 H 0 1 N N N N N N 18.890 69.105 -6.312  3.616   -0.403 -1.693 H32 IY8 57 
IY8 H33 H33 H 0 1 N N N N N N 20.496 68.964 -5.520  4.004   0.825  -0.464 H33 IY8 58 
IY8 H34 H34 H 0 1 N N N N N N 19.780 67.041 -7.223  1.255   -0.203 -1.308 H34 IY8 59 
IY8 H35 H35 H 0 1 N N N N N N 19.853 72.371 -7.736  5.007   -2.868 -1.521 H35 IY8 60 
IY8 O1  O6  O 0 1 N N N N N N 21.487 71.448 -6.251  5.603   -1.035 1.256  O1  IY8 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
IY8 C16 O02 SING N N 1  
IY8 O02 C13 SING N N 2  
IY8 O06 C13 DOUB N N 3  
IY8 C13 C09 SING N N 4  
IY8 C25 C26 SING N N 5  
IY8 C25 C24 DOUB N E 6  
IY8 C20 C19 SING N N 7  
IY8 C20 C21 SING N N 8  
IY8 C23 C24 SING N N 9  
IY8 C23 C22 SING N N 10 
IY8 C18 C19 SING N N 11 
IY8 C18 C10 SING N N 12 
IY8 C09 C12 SING N N 13 
IY8 C09 C08 SING N N 14 
IY8 O04 C12 DOUB N N 15 
IY8 C22 C21 SING N N 16 
IY8 C10 C08 SING N N 17 
IY8 C12 C14 SING N N 18 
IY8 C08 C11 SING N N 19 
IY8 C11 C03 SING N N 20 
IY8 O07 P01 SING N N 21 
IY8 C03 P01 SING N N 22 
IY8 P01 O05 SING N N 23 
IY8 O05 C15 SING N N 24 
IY8 C10 H1  SING N N 25 
IY8 C10 H2  SING N N 26 
IY8 C21 H3  SING N N 27 
IY8 C21 H4  SING N N 28 
IY8 C25 H5  SING N N 29 
IY8 C23 H6  SING N N 30 
IY8 C23 H7  SING N N 31 
IY8 C19 H8  SING N N 32 
IY8 C19 H9  SING N N 33 
IY8 C15 H10 SING N N 34 
IY8 C15 H11 SING N N 35 
IY8 C15 H12 SING N N 36 
IY8 C09 H13 SING N N 37 
IY8 C14 H14 SING N N 38 
IY8 C14 H15 SING N N 39 
IY8 C14 H16 SING N N 40 
IY8 C11 H17 SING N N 41 
IY8 C11 H18 SING N N 42 
IY8 C16 H19 SING N N 43 
IY8 C16 H20 SING N N 44 
IY8 C16 H21 SING N N 45 
IY8 C18 H22 SING N N 46 
IY8 C18 H23 SING N N 47 
IY8 C20 H24 SING N N 48 
IY8 C20 H25 SING N N 49 
IY8 C22 H26 SING N N 50 
IY8 C22 H27 SING N N 51 
IY8 C26 H28 SING N N 52 
IY8 C26 H29 SING N N 53 
IY8 C26 H30 SING N N 54 
IY8 C24 H31 SING N N 55 
IY8 C03 H32 SING N N 56 
IY8 C03 H33 SING N N 57 
IY8 C08 H34 SING N N 58 
IY8 O07 H35 SING N N 59 
IY8 O1  P01 DOUB N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
IY8 InChI            InChI                1.06  "InChI=1S/C19H35O6P/c1-5-6-7-8-9-10-11-12-13-17(14-15-26(22,23)25-4)18(16(2)20)19(21)24-3/h5-6,17-18H,7-15H2,1-4H3,(H,22,23)/b6-5+/t17-,18+/m1/s1" 
IY8 InChIKey         InChI                1.06  KFPPYXMTKZSOKI-VGRIIWOTSA-N                                                                                                                        
IY8 SMILES_CANONICAL CACTVS               3.385 "COC(=O)[C@H]([C@H](CCCCCCC/C=C/C)CC[P](O)(=O)OC)C(C)=O"                                                                                           
IY8 SMILES           CACTVS               3.385 "COC(=O)[CH]([CH](CCCCCCCC=CC)CC[P](O)(=O)OC)C(C)=O"                                                                                               
IY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C=C/CCCCCCC[C@H](CCP(=O)(O)OC)[C@H](C(=O)C)C(=O)OC"                                                                                             
IY8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC=CCCCCCCCC(CCP(=O)(O)OC)C(C(=O)C)C(=O)OC"                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           IY8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "methoxy-[(~{E},3~{R})-3-[(2~{R})-1-methoxy-1,3-bis(oxidanylidene)butan-2-yl]tridec-11-enyl]phosphinic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
IY8 "Create component"  2022-04-20 PDBE 
IY8 "Modify descriptor" 2022-08-22 RCSB 
IY8 "Initial release"   2022-09-28 RCSB 
IY8 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            IY8 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Lipid/lipid-like 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               P01 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
