data_H88
# 
_chem_comp.id                                    H88 
_chem_comp.name                                  "~{N}-[2-methyl-5-[8-[4-(methylsulfonylamino)phenyl]-2-oxidanylidene-benzo[h][1,6]naphthyridin-1-yl]phenyl]-3-oxidanyl-propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H26 N4 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-11-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        542.606 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     H88 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6I99 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H88 C1   C1  C 0 1 N N N N N N 12.600 -20.366 27.797 4.640  4.750  -2.246 C1   H88 1  
H88 C2   C2  C 0 1 N N N N N N 11.343 -20.522 26.970 3.629  4.686  -1.099 C2   H88 2  
H88 C4   C3  C 0 1 Y N N N N N 18.287 -19.770 21.580 -2.880 -1.098 0.203  C4   H88 3  
H88 C6   C4  C 0 1 Y N N N N N 11.009 -20.424 23.306 2.892  1.759  1.150  C6   H88 4  
H88 C7   C5  C 0 1 Y N N N N N 11.015 -21.647 22.653 2.651  1.642  2.513  C7   H88 5  
H88 C9   C6  C 0 1 Y N N N N N 11.520 -20.538 20.580 3.040  -0.717 2.386  C9   H88 6  
H88 C10  C7  C 0 1 Y N N N N N 20.646 -19.492 22.035 -4.573 0.375  1.058  C10  H88 7  
H88 C11  C8  C 0 1 Y N N N N N 11.261 -19.249 22.598 3.202  0.632  0.403  C11  H88 8  
H88 C12  C9  C 0 1 N N N N N N 10.744 -22.920 23.412 2.307  2.865  3.324  C12  H88 9  
H88 C13  C10 C 0 1 Y N N N N N 20.767 -20.852 22.324 -5.552 -0.405 0.451  C13  H88 10 
H88 C14  C11 C 0 1 Y N N N N N 19.645 -21.660 22.241 -5.192 -1.531 -0.281 C14  H88 11 
H88 C18  C12 C 0 1 Y N N N N N 11.516 -19.308 21.231 3.276  -0.608 1.022  C18  H88 12 
H88 C20  C13 C 0 1 N N N N N N 10.639 -17.485 20.006 4.883  -2.110 0.121  C20  H88 13 
H88 C21  C14 C 0 1 N N N N N N 10.738 -16.344 19.235 5.229  -3.256 -0.623 C21  H88 14 
H88 C22  C15 C 0 1 N N N N N N 11.989 -15.857 18.910 4.262  -4.010 -1.206 C22  H88 15 
H88 C23  C16 C 0 1 Y N N N N N 13.141 -16.500 19.349 2.906  -3.629 -1.054 C23  H88 16 
H88 C24  C17 C 0 1 Y N N N N N 13.102 -17.662 20.135 2.595  -2.482 -0.306 C24  H88 17 
H88 C25  C18 C 0 1 N N N N N N 23.807 -20.136 21.317 -7.337 0.712  -2.021 C25  H88 18 
H88 C15  C19 C 0 1 Y N N N N N 18.419 -21.127 21.876 -3.863 -1.877 -0.405 C15  H88 19 
H88 C26  C20 C 0 1 Y N N N N N 14.361 -18.216 20.515 1.235  -2.125 -0.170 C26  H88 20 
H88 C27  C21 C 0 1 Y N N N N N 15.538 -17.583 20.091 0.254  -2.935 -0.792 C27  H88 21 
H88 C29  C22 C 0 1 Y N N N N N 14.346 -15.928 18.967 1.865  -4.375 -1.638 C29  H88 22 
H88 C3   C23 C 0 1 N N N N N N 11.707 -20.680 25.513 3.634  3.303  -0.502 C3   H88 23 
H88 C30  C24 C 0 1 Y N N N N N 14.546 -19.366 21.295 0.850  -0.993 0.562  C30  H88 24 
H88 C31  C25 C 0 1 Y N N N N N 15.799 -19.847 21.625 -0.468 -0.673 0.676  C31  H88 25 
H88 C32  C26 C 0 1 Y N N N N N 16.951 -19.212 21.198 -1.451 -1.465 0.066  C32  H88 26 
H88 C33  C27 C 0 1 Y N N N N N 16.805 -18.069 20.424 -1.098 -2.588 -0.663 C33  H88 27 
H88 C5   C28 C 0 1 Y N N N N N 19.413 -18.957 21.667 -3.244 0.032  0.937  C5   H88 28 
H88 C8   C29 C 0 1 Y N N N N N 11.274 -21.706 21.289 2.725  0.407  3.126  C8   H88 29 
H88 N16  N1  N 0 1 N N N N N N 21.932 -21.444 22.686 -6.897 -0.056 0.577  N16  H88 30 
H88 N19  N2  N 0 1 N N N N N N 11.790 -18.152 20.471 3.595  -1.747 0.273  N19  H88 31 
H88 N28  N3  N 0 1 Y N N N N N 15.501 -16.468 19.337 0.615  -4.021 -1.495 N28  H88 32 
H88 N5   N4  N 0 1 N N N N N N 10.759 -20.366 24.632 2.817  3.011  0.530  N5   H88 33 
H88 O18  O1  O 0 1 N N N N N N 24.303 -21.523 23.377 -6.626 2.294  0.007  O18  H88 34 
H88 O19  O2  O 0 1 N N N N N N 23.132 -19.517 23.690 -8.877 1.271  0.085  O19  H88 35 
H88 O25  O3  O 0 1 N N N N N N 9.508  -17.928 20.301 5.761  -1.442 0.640  O25  H88 36 
H88 O4   O4  O 0 1 N N N N N N 12.817 -21.074 25.194 4.374  2.452  -0.948 O4   H88 37 
H88 S17  S1  S 0 1 N N N N N N 23.312 -20.646 22.820 -7.506 1.218  -0.287 S17  H88 38 
H88 H13  H1  H 0 1 N N N N N N 12.474 -20.820 28.791 5.636  4.523  -1.865 H13  H88 39 
H88 H1   H2  H 0 1 N N N N N N 13.462 -20.826 27.291 4.369  4.022  -3.011 H1   H88 40 
H88 H23  H4  H 0 1 N N N N N N 10.711 -19.630 27.094 3.900  5.414  -0.335 H23  H88 41 
H88 H2   H5  H 0 1 N N N N N N 10.792 -21.412 27.307 2.633  4.913  -1.480 H2   H88 42 
H88 H9   H6  H 0 1 N N N N N N 11.715 -20.584 19.519 3.097  -1.682 2.868  H9   H88 43 
H88 H10  H7  H 0 1 N N N N N N 21.513 -18.851 22.097 -4.855 1.248  1.627  H10  H88 44 
H88 H11  H8  H 0 1 N N N N N N 11.258 -18.297 23.108 3.386  0.719  -0.658 H11  H88 45 
H88 H12  H9  H 0 1 N N N N N N 11.691 -23.329 23.793 1.226  3.006  3.330  H12  H88 46 
H88 H121 H10 H 0 0 N N N N N N 10.071 -22.708 24.256 2.662  2.735  4.346  H121 H88 47 
H88 H122 H11 H 0 0 N N N N N N 10.271 -23.653 22.742 2.785  3.740  2.882  H122 H88 48 
H88 H141 H12 H 0 0 N N N N N N 19.726 -22.714 22.463 -5.953 -2.135 -0.751 H141 H88 49 
H88 H21  H13 H 0 1 N N N N N N 9.848  -15.838 18.890 6.267  -3.534 -0.731 H21  H88 50 
H88 H22  H14 H 0 1 N N N N N N 12.073 -14.965 18.307 4.523  -4.889 -1.778 H22  H88 51 
H88 H252 H15 H 0 0 N N N N N N 24.756 -19.587 21.410 -7.830 -0.248 -2.169 H252 H88 52 
H88 H25  H16 H 0 1 N N N N N N 23.950 -21.009 20.663 -7.798 1.461  -2.665 H25  H88 53 
H88 H251 H17 H 0 0 N N N N N N 23.042 -19.475 20.884 -6.280 0.620  -2.271 H251 H88 54 
H88 H15  H18 H 0 1 N N N N N N 17.554 -21.771 21.820 -3.584 -2.752 -0.974 H15  H88 55 
H88 H29  H19 H 0 1 N N N N N N 14.344 -15.033 18.362 2.103  -5.258 -2.214 H29  H88 56 
H88 H30  H20 H 0 1 N N N N N N 13.676 -19.897 21.652 1.599  -0.376 1.036  H30  H88 57 
H88 H31  H21 H 0 1 N N N N N N 15.880 -20.738 22.230 -0.759 0.200  1.242  H31  H88 58 
H88 H33  H22 H 0 1 N N N N N N 17.684 -17.548 20.074 -1.860 -3.194 -1.130 H33  H88 59 
H88 H5   H23 H 0 1 N N N N N N 19.331 -17.903 21.448 -2.484 0.637  1.409  H5   H88 60 
H88 H8   H24 H 0 1 N N N N N N 11.284 -22.659 20.781 2.542  0.319  4.187  H8   H88 61 
H88 HN16 H25 H 0 0 N N N N N N 21.764 -21.856 23.582 -7.475 -0.561 1.170  HN16 H88 62 
H88 HN5  H26 H 0 1 N N N N N N 9.855  -20.085 24.955 2.176  3.669  0.842  HN5  H88 63 
H88 O1   O5  O 0 1 N N N N N N 12.814 -18.545 27.931 4.635  6.062  -2.813 O1   H88 64 
H88 H3   H3  H 0 1 N N N N N N 13.592 -18.354 28.442 5.254  6.175  -3.547 H3   H88 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H88 C22 C21  DOUB N N 1  
H88 C22 C23  SING N N 2  
H88 C29 N28  DOUB Y N 3  
H88 C29 C23  SING Y N 4  
H88 C21 C20  SING N N 5  
H88 N28 C27  SING Y N 6  
H88 C23 C24  DOUB Y N 7  
H88 C20 O25  DOUB N N 8  
H88 C20 N19  SING N N 9  
H88 C27 C33  DOUB Y N 10 
H88 C27 C26  SING Y N 11 
H88 C24 N19  SING N N 12 
H88 C24 C26  SING Y N 13 
H88 C33 C32  SING Y N 14 
H88 N19 C18  SING N N 15 
H88 C26 C30  DOUB Y N 16 
H88 C9  C18  DOUB Y N 17 
H88 C9  C8   SING Y N 18 
H88 C32 C4   SING N N 19 
H88 C32 C31  DOUB Y N 20 
H88 C18 C11  SING Y N 21 
H88 C8  C7   DOUB Y N 22 
H88 C30 C31  SING Y N 23 
H88 C25 S17  SING N N 24 
H88 C4  C5   DOUB Y N 25 
H88 C4  C15  SING Y N 26 
H88 C5  C10  SING Y N 27 
H88 C15 C14  DOUB Y N 28 
H88 C10 C13  DOUB Y N 29 
H88 C14 C13  SING Y N 30 
H88 C13 N16  SING N N 31 
H88 C11 C6   DOUB Y N 32 
H88 C7  C6   SING Y N 33 
H88 C7  C12  SING N N 34 
H88 N16 S17  SING N N 35 
H88 S17 O18  DOUB N N 36 
H88 S17 O19  DOUB N N 37 
H88 C6  N5   SING N N 38 
H88 N5  C3   SING N N 39 
H88 O4  C3   DOUB N N 40 
H88 C3  C2   SING N N 41 
H88 C2  C1   SING N N 42 
H88 C1  H13  SING N N 43 
H88 C1  H1   SING N N 44 
H88 C2  H23  SING N N 45 
H88 C2  H2   SING N N 46 
H88 C9  H9   SING N N 47 
H88 C10 H10  SING N N 48 
H88 C11 H11  SING N N 49 
H88 C12 H12  SING N N 50 
H88 C12 H121 SING N N 51 
H88 C12 H122 SING N N 52 
H88 C14 H141 SING N N 53 
H88 C21 H21  SING N N 54 
H88 C22 H22  SING N N 55 
H88 C25 H252 SING N N 56 
H88 C25 H25  SING N N 57 
H88 C25 H251 SING N N 58 
H88 C15 H15  SING N N 59 
H88 C29 H29  SING N N 60 
H88 C30 H30  SING N N 61 
H88 C31 H31  SING N N 62 
H88 C33 H33  SING N N 63 
H88 C5  H5   SING N N 64 
H88 C8  H8   SING N N 65 
H88 N16 HN16 SING N N 66 
H88 N5  HN5  SING N N 67 
H88 C1  O1   SING N N 68 
H88 O1  H3   SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H88 InChI            InChI                1.03  "InChI=1S/C29H26N4O5S/c1-18-3-10-23(16-25(18)31-27(35)13-14-34)33-28(36)12-7-21-17-30-26-15-20(6-11-24(26)29(21)33)19-4-8-22(9-5-19)32-39(2,37)38/h3-12,15-17,32,34H,13-14H2,1-2H3,(H,31,35)" 
H88 InChIKey         InChI                1.03  PBOKXQRUWSFTHG-UHFFFAOYSA-N                                                                                                                                                                   
H88 SMILES_CANONICAL CACTVS               3.385 "Cc1ccc(cc1NC(=O)CCO)N2C(=O)C=Cc3cnc4cc(ccc4c23)c5ccc(N[S](C)(=O)=O)cc5"                                                                                                                      
H88 SMILES           CACTVS               3.385 "Cc1ccc(cc1NC(=O)CCO)N2C(=O)C=Cc3cnc4cc(ccc4c23)c5ccc(N[S](C)(=O)=O)cc5"                                                                                                                      
H88 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1NC(=O)CCO)N2c3c4ccc(cc4ncc3C=CC2=O)c5ccc(cc5)NS(=O)(=O)C"                                                                                                                          
H88 SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1ccc(cc1NC(=O)CCO)N2c3c4ccc(cc4ncc3C=CC2=O)c5ccc(cc5)NS(=O)(=O)C"                                                                                                                          
# 
_pdbx_chem_comp_identifier.comp_id           H88 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[2-methyl-5-[8-[4-(methylsulfonylamino)phenyl]-2-oxidanylidene-benzo[h][1,6]naphthyridin-1-yl]phenyl]-3-oxidanyl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H88 "Create component" 2018-11-23 EBI  
H88 "Initial release"  2020-05-27 RCSB 
H88 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            H88 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
