data_EK8
# 
_chem_comp.id                                    EK8 
_chem_comp.name                                  "(2R)-2-benzyl-3-[3-({[4-(piperidin-1-yl)benzoyl]amino}methyl)-4-propoxyphenyl]propanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H38 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-05-10 
_chem_comp.pdbx_modified_date                    2013-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.655 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EK8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VSP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EK8 N89 N89 N 0 1 N N N 17.441 74.601 7.897  7.376  1.321  -0.383 N89 EK8 1  
EK8 C80 C80 C 0 1 N N N 18.084 75.729 8.752  8.307  1.658  0.701  C80 EK8 2  
EK8 C81 C81 C 0 1 N N N 17.185 76.978 8.467  9.654  2.076  0.108  C81 EK8 3  
EK8 C82 C82 C 0 1 N N N 17.202 77.267 6.957  10.215 0.926  -0.732 C82 EK8 4  
EK8 C83 C83 C 0 1 N N N 16.740 75.992 6.098  9.206  0.562  -1.824 C83 EK8 5  
EK8 C84 C84 C 0 1 N N N 17.579 74.785 6.430  7.872  0.188  -1.175 C84 EK8 6  
EK8 C99 C99 C 0 1 Y N N 17.606 72.201 8.587  5.073  0.723  -0.757 C99 EK8 7  
EK8 C98 C98 C 0 1 Y N N 16.826 73.459 8.446  6.104  1.063  0.114  C98 EK8 8  
EK8 C19 C19 C 0 1 Y N N 15.411 73.464 8.909  5.863  1.144  1.483  C19 EK8 9  
EK8 C17 C17 C 0 1 Y N N 14.803 72.262 9.485  4.605  0.889  1.979  C17 EK8 10 
EK8 C87 C87 C 0 1 Y N N 15.593 71.015 9.622  3.568  0.547  1.106  C87 EK8 11 
EK8 C22 C22 C 0 1 Y N N 16.993 71.004 9.163  3.812  0.467  -0.268 C22 EK8 12 
EK8 C97 C97 C 0 1 N N N 15.013 69.862 10.179 2.218  0.272  1.634  C97 EK8 13 
EK8 O99 O99 O 0 1 N N N 13.841 69.498 9.896  2.007  0.342  2.830  O99 EK8 14 
EK8 N99 N99 N 0 1 N N N 15.879 69.188 11.060 1.219  -0.057 0.792  N99 EK8 15 
EK8 C15 C15 C 0 1 N N N 15.500 67.961 11.757 -0.121 -0.330 1.316  C15 EK8 16 
EK8 C8  C8  C 0 1 Y N N 16.597 67.482 12.613 -1.046 -0.672 0.176  C8  EK8 17 
EK8 C9  C9  C 0 1 Y N N 17.871 67.005 12.032 -1.041 -1.949 -0.363 C9  EK8 18 
EK8 O3  O3  O 0 1 N N N 18.042 67.007 10.629 -0.202 -2.895 0.135  O3  EK8 19 
EK8 C12 C12 C 0 1 N N N 19.055 67.900 10.169 -0.250 -4.189 -0.470 C12 EK8 20 
EK8 C13 C13 C 0 1 N N N 19.672 67.344 8.932  0.757  -5.112 0.219  C13 EK8 21 
EK8 C14 C14 C 0 1 N N N 19.198 68.148 7.755  0.705  -6.497 -0.429 C14 EK8 22 
EK8 C10 C10 C 0 1 Y N N 18.942 66.532 12.951 -1.894 -2.260 -1.413 C10 EK8 23 
EK8 C11 C11 C 0 1 Y N N 18.764 66.530 14.399 -2.746 -1.297 -1.917 C11 EK8 24 
EK8 C6  C6  C 0 1 Y N N 17.494 67.009 14.976 -2.750 -0.024 -1.377 C6  EK8 25 
EK8 C5  C5  C 0 1 N N N 17.262 67.035 16.465 -3.681 1.025  -1.929 C5  EK8 26 
EK8 C2  C2  C 0 1 N N R 18.457 67.527 17.331 -5.056 0.881  -1.274 C2  EK8 27 
EK8 C3  C3  C 0 1 N N N 18.582 69.095 17.270 -4.947 1.206  0.217  C3  EK8 28 
EK8 C4  C4  C 0 1 Y N N 19.731 69.715 18.067 -6.273 0.947  0.886  C4  EK8 29 
EK8 C51 C51 C 0 1 Y N N 19.500 70.355 19.336 -6.548 -0.301 1.414  C51 EK8 30 
EK8 C52 C52 C 0 1 Y N N 20.571 70.939 20.107 -7.764 -0.539 2.027  C52 EK8 31 
EK8 C53 C53 C 0 1 Y N N 21.917 70.893 19.601 -8.704 0.471  2.112  C53 EK8 32 
EK8 C54 C54 C 0 1 Y N N 22.184 70.248 18.313 -8.429 1.718  1.584  C54 EK8 33 
EK8 C55 C55 C 0 1 Y N N 21.095 69.663 17.543 -7.211 1.958  0.976  C55 EK8 34 
EK8 C7  C7  C 0 1 Y N N 16.416 67.482 14.080 -1.905 0.287  -0.328 C7  EK8 35 
EK8 C1  C1  C 0 1 N N N 18.157 66.934 18.638 -6.025 1.834  -1.926 C1  EK8 36 
EK8 O1  O1  O 0 1 N N N 18.039 65.732 18.843 -5.649 2.923  -2.290 O1  EK8 37 
EK8 O2  O2  O 0 1 N N N 18.001 67.780 19.698 -7.305 1.472  -2.103 O2  EK8 38 
EK8 H1  H1  H 0 1 N N N 18.065 75.469 9.821  7.898  2.480  1.288  H1  EK8 39 
EK8 H2  H2  H 0 1 N N N 19.122 75.914 8.438  8.447  0.788  1.343  H2  EK8 40 
EK8 H3  H3  H 0 1 N N N 17.577 77.848 9.014  9.517  2.954  -0.523 H3  EK8 41 
EK8 H4  H4  H 0 1 N N N 16.154 76.774 8.793  10.349 2.312  0.913  H4  EK8 42 
EK8 H5  H5  H 0 1 N N N 18.224 77.545 6.660  11.154 1.235  -1.192 H5  EK8 43 
EK8 H6  H6  H 0 1 N N N 16.519 78.103 6.747  10.390 0.060  -0.094 H6  EK8 44 
EK8 H7  H7  H 0 1 N N N 16.847 76.221 5.028  9.061  1.416  -2.486 H7  EK8 45 
EK8 H8  H8  H 0 1 N N N 15.686 75.770 6.322  9.581  -0.285 -2.399 H8  EK8 46 
EK8 H9  H9  H 0 1 N N N 17.208 73.899 5.894  8.014  -0.675 -0.524 H9  EK8 47 
EK8 H10 H10 H 0 1 N N N 18.631 74.962 6.161  7.146  -0.058 -1.951 H10 EK8 48 
EK8 H11 H11 H 0 1 N N N 18.635 72.171 8.261  5.261  0.665  -1.819 H11 EK8 49 
EK8 H12 H12 H 0 1 N N N 14.825 74.366 8.819  6.665  1.408  2.157  H12 EK8 50 
EK8 H13 H13 H 0 1 N N N 13.774 72.284 9.812  4.420  0.951  3.041  H13 EK8 51 
EK8 H14 H14 H 0 1 N N N 17.575 70.099 9.253  3.012  0.207  -0.945 H14 EK8 52 
EK8 H15 H15 H 0 1 N N N 16.792 69.565 11.216 1.388  -0.113 -0.162 H15 EK8 53 
EK8 H16 H16 H 0 1 N N N 14.617 68.160 12.382 -0.075 -1.169 2.011  H16 EK8 54 
EK8 H17 H17 H 0 1 N N N 15.257 67.186 11.015 -0.495 0.552  1.836  H17 EK8 55 
EK8 H18 H18 H 0 1 N N N 19.826 68.014 10.946 -1.253 -4.602 -0.364 H18 EK8 56 
EK8 H19 H19 H 0 1 N N N 18.609 68.881 9.949  -0.002 -4.105 -1.528 H19 EK8 57 
EK8 H20 H20 H 0 1 N N N 19.371 66.293 8.808  1.760  -4.699 0.112  H20 EK8 58 
EK8 H21 H21 H 0 1 N N N 20.768 67.405 9.005  0.509  -5.196 1.276  H21 EK8 59 
EK8 H22 H22 H 0 1 N N N 19.646 67.749 6.833  -0.298 -6.910 -0.323 H22 EK8 60 
EK8 H23 H23 H 0 1 N N N 18.102 68.086 7.686  0.953  -6.413 -1.487 H23 EK8 61 
EK8 H24 H24 H 0 1 N N N 19.499 69.198 7.883  1.423  -7.155 0.062  H24 EK8 62 
EK8 H25 H25 H 0 1 N N N 19.875 66.181 12.535 -1.891 -3.254 -1.835 H25 EK8 63 
EK8 H26 H26 H 0 1 N N N 19.557 66.180 15.044 -3.411 -1.539 -2.733 H26 EK8 64 
EK8 H27 H27 H 0 1 N N N 16.408 67.699 16.661 -3.279 2.015  -1.717 H27 EK8 65 
EK8 H28 H28 H 0 1 N N N 17.012 66.013 16.785 -3.776 0.894  -3.007 H28 EK8 66 
EK8 H29 H29 H 0 1 N N N 19.383 67.090 16.929 -5.413 -0.141 -1.398 H29 EK8 67 
EK8 H30 H30 H 0 1 N N N 18.713 69.380 16.216 -4.182 0.576  0.671  H30 EK8 68 
EK8 H31 H31 H 0 1 N N N 17.642 69.521 17.651 -4.676 2.254  0.342  H31 EK8 69 
EK8 H32 H32 H 0 1 N N N 18.493 70.399 19.723 -5.813 -1.090 1.347  H32 EK8 70 
EK8 H33 H33 H 0 1 N N N 20.363 71.408 21.058 -7.979 -1.513 2.440  H33 EK8 71 
EK8 H34 H34 H 0 1 N N N 22.726 71.331 20.167 -9.654 0.285  2.591  H34 EK8 72 
EK8 H35 H35 H 0 1 N N N 23.194 70.206 17.932 -9.164 2.507  1.650  H35 EK8 73 
EK8 H36 H36 H 0 1 N N N 21.294 69.194 16.591 -6.994 2.934  0.567  H36 EK8 74 
EK8 H37 H37 H 0 1 N N N 15.486 67.831 14.503 -1.913 1.280  0.095  H37 EK8 75 
EK8 H38 H38 H 0 1 N N N 17.813 67.276 20.481 -7.889 2.117  -2.526 H38 EK8 76 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EK8 C83 C84 SING N N 1  
EK8 C83 C82 SING N N 2  
EK8 C84 N89 SING N N 3  
EK8 C82 C81 SING N N 4  
EK8 C14 C13 SING N N 5  
EK8 N89 C98 SING N N 6  
EK8 N89 C80 SING N N 7  
EK8 C98 C99 DOUB Y N 8  
EK8 C98 C19 SING Y N 9  
EK8 C81 C80 SING N N 10 
EK8 C99 C22 SING Y N 11 
EK8 C19 C17 DOUB Y N 12 
EK8 C13 C12 SING N N 13 
EK8 C22 C87 DOUB Y N 14 
EK8 C17 C87 SING Y N 15 
EK8 C87 C97 SING N N 16 
EK8 O99 C97 DOUB N N 17 
EK8 C12 O3  SING N N 18 
EK8 C97 N99 SING N N 19 
EK8 O3  C9  SING N N 20 
EK8 N99 C15 SING N N 21 
EK8 C15 C8  SING N N 22 
EK8 C9  C8  DOUB Y N 23 
EK8 C9  C10 SING Y N 24 
EK8 C8  C7  SING Y N 25 
EK8 C10 C11 DOUB Y N 26 
EK8 C7  C6  DOUB Y N 27 
EK8 C11 C6  SING Y N 28 
EK8 C6  C5  SING N N 29 
EK8 C5  C2  SING N N 30 
EK8 C3  C2  SING N N 31 
EK8 C3  C4  SING N N 32 
EK8 C2  C1  SING N N 33 
EK8 C55 C4  DOUB Y N 34 
EK8 C55 C54 SING Y N 35 
EK8 C4  C51 SING Y N 36 
EK8 C54 C53 DOUB Y N 37 
EK8 C1  O1  DOUB N N 38 
EK8 C1  O2  SING N N 39 
EK8 C51 C52 DOUB Y N 40 
EK8 C53 C52 SING Y N 41 
EK8 C80 H1  SING N N 42 
EK8 C80 H2  SING N N 43 
EK8 C81 H3  SING N N 44 
EK8 C81 H4  SING N N 45 
EK8 C82 H5  SING N N 46 
EK8 C82 H6  SING N N 47 
EK8 C83 H7  SING N N 48 
EK8 C83 H8  SING N N 49 
EK8 C84 H9  SING N N 50 
EK8 C84 H10 SING N N 51 
EK8 C99 H11 SING N N 52 
EK8 C19 H12 SING N N 53 
EK8 C17 H13 SING N N 54 
EK8 C22 H14 SING N N 55 
EK8 N99 H15 SING N N 56 
EK8 C15 H16 SING N N 57 
EK8 C15 H17 SING N N 58 
EK8 C12 H18 SING N N 59 
EK8 C12 H19 SING N N 60 
EK8 C13 H20 SING N N 61 
EK8 C13 H21 SING N N 62 
EK8 C14 H22 SING N N 63 
EK8 C14 H23 SING N N 64 
EK8 C14 H24 SING N N 65 
EK8 C10 H25 SING N N 66 
EK8 C11 H26 SING N N 67 
EK8 C5  H27 SING N N 68 
EK8 C5  H28 SING N N 69 
EK8 C2  H29 SING N N 70 
EK8 C3  H30 SING N N 71 
EK8 C3  H31 SING N N 72 
EK8 C51 H32 SING N N 73 
EK8 C52 H33 SING N N 74 
EK8 C53 H34 SING N N 75 
EK8 C54 H35 SING N N 76 
EK8 C55 H36 SING N N 77 
EK8 C7  H37 SING N N 78 
EK8 O2  H38 SING N N 79 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EK8 SMILES           ACDLabs              12.01 "O=C(O)C(Cc1ccccc1)Cc2cc(c(OCCC)cc2)CNC(=O)c3ccc(cc3)N4CCCCC4" 
EK8 InChI            InChI                1.03  
"InChI=1S/C32H38N2O4/c1-2-19-38-30-16-11-25(21-27(32(36)37)20-24-9-5-3-6-10-24)22-28(30)23-33-31(35)26-12-14-29(15-13-26)34-17-7-4-8-18-34/h3,5-6,9-16,22,27H,2,4,7-8,17-21,23H2,1H3,(H,33,35)(H,36,37)/t27-/m1/s1" 
EK8 InChIKey         InChI                1.03  ISYAJDFASPMBOB-HHHXNRCGSA-N 
EK8 SMILES_CANONICAL CACTVS               3.370 "CCCOc1ccc(C[C@@H](Cc2ccccc2)C(O)=O)cc1CNC(=O)c3ccc(cc3)N4CCCCC4" 
EK8 SMILES           CACTVS               3.370 "CCCOc1ccc(C[CH](Cc2ccccc2)C(O)=O)cc1CNC(=O)c3ccc(cc3)N4CCCCC4" 
EK8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)N3CCCCC3)C[C@@H](Cc4ccccc4)C(=O)O" 
EK8 SMILES           "OpenEye OEToolkits" 1.7.6 "CCCOc1ccc(cc1CNC(=O)c2ccc(cc2)N3CCCCC3)CC(Cc4ccccc4)C(=O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EK8 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-2-benzyl-3-[3-({[4-(piperidin-1-yl)benzoyl]amino}methyl)-4-propoxyphenyl]propanoic acid"               
EK8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-(phenylmethyl)-3-[3-[[(4-piperidin-1-ylphenyl)carbonylamino]methyl]-4-propoxy-phenyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EK8 "Create component" 2012-05-10 PDBJ 
EK8 "Initial release"  2013-05-01 RCSB 
# 
