data_EF8
# 
_chem_comp.id                                    EF8 
_chem_comp.name                                  "6-[[(3~{R},4~{R},5~{S})-4-acetamido-5-azanyl-3-pentan-3-yloxy-cyclohexen-1-yl]-oxidanyl-phosphoryl]oxyhexylimino-azanylidene-azanium" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H37 N5 O5 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    1 
_chem_comp.pdbx_initial_date                     2018-03-16 
_chem_comp.pdbx_modified_date                    2019-01-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        446.501 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EF8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6G02 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EF8 C4  C1  C 0 1 N N S 19.858 21.567 8.390  -4.256 -1.776 0.369  C4  EF8 1  
EF8 C5  C2  C 0 1 N N R 21.326 21.891 8.423  -4.231 -0.359 -0.219 C5  EF8 2  
EF8 C6  C3  C 0 1 N N R 21.462 23.354 8.219  -3.031 0.388  0.368  C6  EF8 3  
EF8 C11 C4  C 0 1 N N N 23.399 19.638 6.231  -7.188 2.070  -0.287 C11 EF8 4  
EF8 C7  C5  C 0 1 N N N 20.664 24.103 9.118  -1.791 -0.449 0.246  C7  EF8 5  
EF8 C8  C6  C 0 1 N N N 23.566 24.041 7.254  -2.146 2.615  0.404  C8  EF8 6  
EF8 C9  C7  C 0 1 N N N 23.054 25.245 6.410  -3.150 3.600  1.005  C9  EF8 7  
EF8 C10 C8  C 0 1 N N N 22.832 20.218 7.505  -5.914 1.351  -0.645 C10 EF8 8  
EF8 C3  C9  C 0 1 N N N 19.102 22.289 9.535  -3.041 -2.541 -0.160 C3  EF8 9  
EF8 N8  N1  N 0 1 N N N 20.722 20.497 21.094 10.604 1.828  -1.082 N8  EF8 10 
EF8 N7  N2  N 1 1 N N N 20.161 21.767 20.891 9.963  1.304  -0.322 N7  EF8 11 
EF8 N6  N3  N 0 1 N N N 19.580 23.028 20.718 9.322  0.780  0.438  N6  EF8 12 
EF8 C25 C10 C 0 1 N N N 20.129 23.918 19.633 7.905  1.129  0.568  C25 EF8 13 
EF8 C24 C11 C 0 1 N N N 19.069 23.940 18.499 7.048  -0.108 0.292  C24 EF8 14 
EF8 C23 C12 C 0 1 N N N 19.674 24.123 17.123 5.568  0.257  0.428  C23 EF8 15 
EF8 C22 C13 C 0 1 N N N 18.557 24.137 16.036 4.711  -0.980 0.152  C22 EF8 16 
EF8 C21 C14 C 0 1 N N N 19.276 24.232 14.708 3.231  -0.615 0.287  C21 EF8 17 
EF8 C20 C15 C 0 1 N N N 18.314 24.354 13.523 2.374  -1.852 0.012  C20 EF8 18 
EF8 OP3 O1  O 0 1 N N N 19.076 24.147 12.341 0.992  -1.512 0.138  OP3 EF8 19 
EF8 P1  P1  P 0 1 N N N 18.608 24.632 10.900 -0.197 -2.574 -0.084 P1  EF8 20 
EF8 OP2 O2  O 0 1 N N N 18.874 26.144 10.814 -0.120 -3.712 1.052  OP2 EF8 21 
EF8 OP1 O3  O 0 1 N N N 17.098 24.388 10.736 -0.057 -3.199 -1.418 OP1 EF8 22 
EF8 C2  C16 C 0 1 N N N 19.535 23.620 9.693  -1.796 -1.723 0.020  C2  EF8 23 
EF8 N4  N4  N 0 1 N N N 19.590 20.116 8.406  -5.489 -2.460 -0.042 N4  EF8 24 
EF8 N5  N5  N 0 1 N N N 22.020 21.208 7.301  -5.470 0.340  0.129  N5  EF8 25 
EF8 O10 O4  O 0 1 N N N 23.141 19.798 8.619  -5.287 1.681  -1.629 O10 EF8 26 
EF8 O7  O5  O 0 1 N N N 22.848 23.782 8.441  -2.846 1.615  -0.340 O7  EF8 27 
EF8 C81 C17 C 0 1 N N N 25.021 24.244 7.630  -1.188 3.364  -0.524 C81 EF8 28 
EF8 C82 C18 C 0 1 N N N 25.590 22.897 8.076  -0.119 2.400  -1.041 C82 EF8 29 
EF8 C91 C19 C 0 1 N N N 23.148 26.550 7.153  -4.027 2.875  2.028  C91 EF8 30 
EF8 H1  H1  H 0 1 N N N 19.458 21.967 7.447  -4.213 -1.721 1.457  H1  EF8 31 
EF8 H2  H2  H 0 1 N N N 21.762 21.592 9.388  -4.134 -0.415 -1.303 H2  EF8 32 
EF8 H3  H3  H 0 1 N N N 21.176 23.594 7.184  -3.218 0.602  1.420  H3  EF8 33 
EF8 H4  H4  H 0 1 N N N 24.095 18.822 6.477  -7.384 2.850  -1.023 H4  EF8 34 
EF8 H5  H5  H 0 1 N N N 22.580 19.246 5.610  -8.016 1.361  -0.280 H5  EF8 35 
EF8 H6  H6  H 0 1 N N N 23.935 20.423 5.678  -7.087 2.520  0.701  H6  EF8 36 
EF8 H7  H7  H 0 1 N N N 20.970 25.110 9.358  -0.836 0.043  0.353  H7  EF8 37 
EF8 H8  H8  H 0 1 N N N 23.514 23.152 6.608  -1.578 2.141  1.205  H8  EF8 38 
EF8 H9  H9  H 0 1 N N N 22.002 25.066 6.142  -2.613 4.411  1.497  H9  EF8 39 
EF8 H10 H10 H 0 1 N N N 23.659 25.316 5.494  -3.777 4.009  0.213  H10 EF8 40 
EF8 H11 H11 H 0 1 N N N 18.026 22.290 9.306  -2.940 -3.480 0.385  H11 EF8 41 
EF8 H12 H12 H 0 1 N N N 19.276 21.744 10.475 -3.182 -2.755 -1.220 H12 EF8 42 
EF8 H13 H13 H 0 1 N N N 20.324 20.034 21.886 10.684 1.469  -1.979 H13 EF8 43 
EF8 H14 H14 H 0 1 N N N 21.080 23.514 19.256 7.711  1.488  1.578  H14 EF8 44 
EF8 H15 H15 H 0 1 N N N 20.291 24.934 20.021 7.657  1.911  -0.150 H15 EF8 45 
EF8 H16 H16 H 0 1 N N N 18.372 24.769 18.688 7.243  -0.468 -0.718 H16 EF8 46 
EF8 H17 H17 H 0 1 N N N 18.519 22.988 18.516 7.297  -0.890 1.010  H17 EF8 47 
EF8 H18 H18 H 0 1 N N N 20.368 23.294 16.919 5.374  0.616  1.438  H18 EF8 48 
EF8 H19 H19 H 0 1 N N N 20.222 25.076 17.092 5.320  1.038  -0.290 H19 EF8 49 
EF8 H20 H20 H 0 1 N N N 17.896 25.005 16.177 4.906  -1.340 -0.858 H20 EF8 50 
EF8 H21 H21 H 0 1 N N N 17.963 23.212 16.085 4.960  -1.762 0.870  H21 EF8 51 
EF8 H22 H22 H 0 1 N N N 19.887 23.328 14.573 3.037  -0.256 1.298  H22 EF8 52 
EF8 H23 H23 H 0 1 N N N 19.929 25.117 14.724 2.983  0.166  -0.430 H23 EF8 53 
EF8 H24 H24 H 0 1 N N N 17.859 25.356 13.508 2.569  -2.212 -0.998 H24 EF8 54 
EF8 H25 H25 H 0 1 N N N 17.523 23.593 13.600 2.622  -2.634 0.730  H25 EF8 55 
EF8 H26 H26 H 0 1 N N N 18.053 26.603 10.679 -0.205 -3.374 1.954  H26 EF8 56 
EF8 H27 H27 H 0 1 N N N 18.603 19.959 8.383  -5.526 -3.395 0.334  H27 EF8 57 
EF8 H28 H28 H 0 1 N N N 20.014 19.690 7.607  -6.304 -1.929 0.226  H28 EF8 58 
EF8 H30 H30 H 0 1 N N N 21.857 21.520 6.365  -5.972 0.076  0.916  H30 EF8 59 
EF8 H31 H31 H 0 1 N N N 25.582 24.616 6.760  -1.745 3.775  -1.366 H31 EF8 60 
EF8 H32 H32 H 0 1 N N N 25.095 24.971 8.452  -0.710 4.176  0.025  H32 EF8 61 
EF8 H33 H33 H 0 1 N N N 26.647 23.019 8.355  0.491  2.052  -0.207 H33 EF8 62 
EF8 H34 H34 H 0 1 N N N 25.023 22.529 8.943  -0.600 1.547  -1.520 H34 EF8 63 
EF8 H35 H35 H 0 1 N N N 25.509 22.174 7.251  0.514  2.913  -1.765 H35 EF8 64 
EF8 H36 H36 H 0 1 N N N 22.775 27.364 6.514  -4.564 2.064  1.535  H36 EF8 65 
EF8 H37 H37 H 0 1 N N N 22.541 26.495 8.069  -3.400 2.467  2.820  H37 EF8 66 
EF8 H38 H38 H 0 1 N N N 24.197 26.745 7.420  -4.742 3.577  2.456  H38 EF8 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EF8 C11 C10 SING N N 1  
EF8 C9  C91 SING N N 2  
EF8 C9  C8  SING N N 3  
EF8 C8  C81 SING N N 4  
EF8 C8  O7  SING N N 5  
EF8 N5  C10 SING N N 6  
EF8 N5  C5  SING N N 7  
EF8 C10 O10 DOUB N N 8  
EF8 C81 C82 SING N N 9  
EF8 C6  C5  SING N N 10 
EF8 C6  O7  SING N N 11 
EF8 C6  C7  SING N N 12 
EF8 C4  N4  SING N N 13 
EF8 C4  C5  SING N N 14 
EF8 C4  C3  SING N N 15 
EF8 C7  C2  DOUB N N 16 
EF8 C3  C2  SING N N 17 
EF8 C2  P1  SING N N 18 
EF8 OP1 P1  DOUB N N 19 
EF8 OP2 P1  SING N N 20 
EF8 P1  OP3 SING N N 21 
EF8 OP3 C20 SING N N 22 
EF8 C20 C21 SING N N 23 
EF8 C21 C22 SING N N 24 
EF8 C22 C23 SING N N 25 
EF8 C23 C24 SING N N 26 
EF8 C24 C25 SING N N 27 
EF8 C25 N6  SING N N 28 
EF8 N6  N7  DOUB N N 29 
EF8 N7  N8  DOUB N N 30 
EF8 C4  H1  SING N N 31 
EF8 C5  H2  SING N N 32 
EF8 C6  H3  SING N N 33 
EF8 C11 H4  SING N N 34 
EF8 C11 H5  SING N N 35 
EF8 C11 H6  SING N N 36 
EF8 C7  H7  SING N N 37 
EF8 C8  H8  SING N N 38 
EF8 C9  H9  SING N N 39 
EF8 C9  H10 SING N N 40 
EF8 C3  H11 SING N N 41 
EF8 C3  H12 SING N N 42 
EF8 N8  H13 SING N N 43 
EF8 C25 H14 SING N N 44 
EF8 C25 H15 SING N N 45 
EF8 C24 H16 SING N N 46 
EF8 C24 H17 SING N N 47 
EF8 C23 H18 SING N N 48 
EF8 C23 H19 SING N N 49 
EF8 C22 H20 SING N N 50 
EF8 C22 H21 SING N N 51 
EF8 C21 H22 SING N N 52 
EF8 C21 H23 SING N N 53 
EF8 C20 H24 SING N N 54 
EF8 C20 H25 SING N N 55 
EF8 OP2 H26 SING N N 56 
EF8 N4  H27 SING N N 57 
EF8 N4  H28 SING N N 58 
EF8 N5  H30 SING N N 59 
EF8 C81 H31 SING N N 60 
EF8 C81 H32 SING N N 61 
EF8 C82 H33 SING N N 62 
EF8 C82 H34 SING N N 63 
EF8 C82 H35 SING N N 64 
EF8 C91 H36 SING N N 65 
EF8 C91 H37 SING N N 66 
EF8 C91 H38 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EF8 InChI            InChI                1.03  "InChI=1S/C19H36N5O5P/c1-4-15(5-2)29-18-13-16(12-17(20)19(18)23-14(3)25)30(26,27)28-11-9-7-6-8-10-22-24-21/h13,15,17-19,21H,4-12,20H2,1-3H3,(H-,23,25,26,27)/p+1/t17-,18+,19+/m0/s1" 
EF8 InChIKey         InChI                1.03  SQYBSQHYIJSZEH-IPMKNSEASA-O                                                                                                                                                          
EF8 SMILES_CANONICAL CACTVS               3.385 "CCC(CC)O[C@@H]1C=C(C[C@H](N)[C@H]1NC(C)=O)[P](O)(=O)OCCCCCCN=[N+]=N"                                                                                                                
EF8 SMILES           CACTVS               3.385 "CCC(CC)O[CH]1C=C(C[CH](N)[CH]1NC(C)=O)[P](O)(=O)OCCCCCCN=[N+]=N"                                                                                                                    
EF8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(CC)O[C@@H]1C=C(C[C@@H]([C@H]1NC(=O)C)N)P(=O)(O)OCCCCCCN=[N+]=N"                                                                                                                 
EF8 SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(CC)OC1C=C(CC(C1NC(=O)C)N)P(=O)(O)OCCCCCCN=[N+]=N"                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
EF8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "6-[[(3~{R},4~{R},5~{S})-4-acetamido-5-azanyl-3-pentan-3-yloxy-cyclohexen-1-yl]-oxidanyl-phosphoryl]oxyhexylimino-azanylidene-azanium" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EF8 "Create component" 2018-03-16 EBI  
EF8 "Initial release"  2019-01-23 RCSB 
# 
