data_DU8
#

_chem_comp.id                                   DU8
_chem_comp.name                                 "3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(azidomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanylpropanoic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H16 N8 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-01-30
_chem_comp.pdbx_modified_date                   2019-03-08
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       396.382
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DU8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6FMA
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DU8  C1   C1   C   0  1  Y  N  N  -18.474  15.187  41.874   1.982   4.515   0.704  C1   DU8   1  
DU8  O1   O1   O   0  1  N  N  N  -14.651  18.883  41.493  -1.854   0.392   0.540  O1   DU8   2  
DU8  C2   C2   C   0  1  Y  N  N  -16.832  13.827  40.980   3.464   2.746   0.706  C2   DU8   3  
DU8  C3   C3   C   0  1  Y  N  N  -15.937  14.784  41.152   2.395   1.877   0.433  C3   DU8   4  
DU8  C4   C4   C   0  1  Y  N  N  -16.331  15.926  41.674   1.110   2.427   0.301  C4   DU8   5  
DU8  C5   C5   C   0  1  Y  N  N  -14.274  16.068  41.299   1.027   0.235   0.017  C5   DU8   6  
DU8  C6   C6   C   0  1  N  N  R  -14.625  18.174  43.614  -1.519   1.200  -1.662  C6   DU8   7  
DU8  C7   C7   C   0  1  N  N  S  -14.560  19.675  43.525  -2.835   0.392  -1.616  C7   DU8   8  
DU8  O2   O2   O   0  1  N  N  N  -15.300  17.813  44.770  -1.715   2.439  -2.347  O2   DU8   9  
DU8  C10  C8   C   0  1  N  N  N  -14.026  21.118  41.894  -3.735  -1.125   0.189  C10  DU8  10  
DU8  C11  C9   C   0  1  N  N  N  -11.506  15.548  41.035   1.954  -2.334  -0.156  C11  DU8  11  
DU8  C12  C10  C   0  1  N  N  N  -10.126  15.948  41.564   1.661  -3.818  -0.385  C12  DU8  12  
DU8  C13  C11  C   0  1  N  N  N   -9.605  17.153  40.756   2.943  -4.604  -0.283  C13  DU8  13  
DU8  C8   C12  C   0  1  N  N  R  -14.938  19.966  42.151  -3.137   0.251  -0.108  C8   DU8  14  
DU8  C9   C13  C   0  1  N  N  R  -15.363  18.004  42.303  -1.181   1.451  -0.175  C9   DU8  15  
DU8  N1   N1   N   0  1  Y  N  N  -18.084  14.035  41.323   3.209   4.044   0.831  N1   DU8  16  
DU8  N2   N2   N   0  1  Y  N  N  -17.580  16.148  42.026   0.950   3.738   0.448  N2   DU8  17  
DU8  N3   N3   N   0  1  Y  N  N  -15.286  16.701  41.777   0.266   1.372   0.039  N3   DU8  18  
DU8  N4   N4   N   0  1  Y  N  N  -14.648  14.881  40.903   2.282   0.538   0.245  N4   DU8  19  
DU8  N5   N5   N   0  1  N  N  N  -16.442  12.704  40.456   4.754   2.260   0.846  N5   DU8  20  
DU8  N6   N6   N   0  1  N  N  N  -12.925  20.782  41.038  -4.054  -1.222   1.616  N6   DU8  21  
DU8  N7   N7   N   1  1  N  N  N  -12.364  20.244  41.368  -5.112  -1.410   1.944  N7   DU8  22  
DU8  N8   N8   N  -1  1  N  N  N  -11.755  19.646  41.678  -6.171  -1.597   2.272  N8   DU8  23  
DU8  O3   O3   O   0  1  N  N  N  -15.544  20.288  44.214  -3.884   1.107  -2.272  O3   DU8  24  
DU8  O4   O4   O   0  1  N  N  N   -9.010  18.070  41.339   2.929  -5.936  -0.449  O4   DU8  25  
DU8  O5   O5   O   0  1  N  N  N   -9.825  17.090  39.564   3.984  -4.036  -0.051  O5   DU8  26  
DU8  S1   S1   S   0  1  N  N  N  -12.678  16.865  41.282   0.414  -1.390  -0.279  S1   DU8  27  
DU8  H1   H1   H   0  1  N  N  N  -19.497  15.330  42.188   1.818   5.576   0.818  H1   DU8  28  
DU8  H2   H2   H   0  1  N  N  N  -13.619  17.734  43.554  -0.731   0.619  -2.142  H2   DU8  29  
DU8  H3   H3   H   0  1  N  N  N  -13.552  20.046  43.763  -2.698  -0.587  -2.074  H3   DU8  30  
DU8  H4   H4   H   0  1  N  N  N  -14.741  17.963  45.523  -1.960   2.339  -3.277  H4   DU8  31  
DU8  H5   H5   H   0  1  N  N  N  -13.627  21.470  42.857  -4.644  -1.261  -0.396  H5   DU8  32  
DU8  H6   H6   H   0  1  N  N  N  -14.605  21.924  41.420  -3.014  -1.899  -0.075  H6   DU8  33  
DU8  H7   H7   H   0  1  N  N  N  -11.852  14.651  41.570   2.386  -2.197   0.835  H7   DU8  34  
DU8  H8   H8   H   0  1  N  N  N  -11.431  15.328  39.960   2.657  -1.982  -0.911  H8   DU8  35  
DU8  H9   H9   H   0  1  N  N  N   -9.431  15.103  41.454   0.958  -4.171   0.370  H9   DU8  36  
DU8  H10  H10  H   0  1  N  N  N  -10.204  16.223  42.626   1.230  -3.955  -1.376  H10  DU8  37  
DU8  H11  H11  H   0  1  N  N  N  -15.992  20.274  42.078  -3.816   1.038   0.220  H11  DU8  38  
DU8  H12  H12  H   0  1  N  N  N  -16.409  18.324  42.423  -1.560   2.423   0.141  H12  DU8  39  
DU8  H13  H13  H   0  1  N  N  N  -17.223  12.085  40.375   4.927   1.310   0.756  H13  DU8  40  
DU8  H14  H14  H   0  1  N  N  N  -16.057  12.875  39.549   5.484   2.870   1.035  H14  DU8  41  
DU8  H16  H16  H   0  1  N  N  N  -15.403  20.165  45.145  -4.734   0.646  -2.273  H16  DU8  42  
DU8  H17  H17  H   0  1  N  N  N   -8.746  18.729  40.707   3.776  -6.397  -0.375  H17  DU8  43  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DU8  O5   C13  DOUB  N  N   1  
DU8  N5   C2   SING  N  N   2  
DU8  C13  O4   SING  N  N   3  
DU8  C13  C12  SING  N  N   4  
DU8  N4   C3   SING  Y  N   5  
DU8  N4   C5   DOUB  Y  N   6  
DU8  C2   C3   DOUB  Y  N   7  
DU8  C2   N1   SING  Y  N   8  
DU8  C11  S1   SING  N  N   9  
DU8  C11  C12  SING  N  N  10  
DU8  N6   N7   DOUB  N  N  11  
DU8  N6   C10  SING  N  N  12  
DU8  C3   C4   SING  Y  N  13  
DU8  S1   C5   SING  N  N  14  
DU8  C5   N3   SING  Y  N  15  
DU8  N1   C1   DOUB  Y  N  16  
DU8  N7   N8   DOUB  N  N  17  
DU8  O1   C8   SING  N  N  18  
DU8  O1   C9   SING  N  N  19  
DU8  C4   N3   SING  Y  N  20  
DU8  C4   N2   DOUB  Y  N  21  
DU8  N3   C9   SING  N  N  22  
DU8  C1   N2   SING  Y  N  23  
DU8  C10  C8   SING  N  N  24  
DU8  C8   C7   SING  N  N  25  
DU8  C9   C6   SING  N  N  26  
DU8  C7   C6   SING  N  N  27  
DU8  C7   O3   SING  N  N  28  
DU8  C6   O2   SING  N  N  29  
DU8  C1   H1   SING  N  N  30  
DU8  C6   H2   SING  N  N  31  
DU8  C7   H3   SING  N  N  32  
DU8  O2   H4   SING  N  N  33  
DU8  C10  H5   SING  N  N  34  
DU8  C10  H6   SING  N  N  35  
DU8  C11  H7   SING  N  N  36  
DU8  C11  H8   SING  N  N  37  
DU8  C12  H9   SING  N  N  38  
DU8  C12  H10  SING  N  N  39  
DU8  C8   H11  SING  N  N  40  
DU8  C9   H12  SING  N  N  41  
DU8  N5   H13  SING  N  N  42  
DU8  N5   H14  SING  N  N  43  
DU8  O3   H16  SING  N  N  44  
DU8  O4   H17  SING  N  N  45  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DU8  InChI             InChI                 1.03   "InChI=1S/C13H16N8O5S/c14-10-7-11(17-4-16-10)21(13(19-7)27-2-1-6(22)23)12-9(25)8(24)5(26-12)3-18-20-15/h4-5,8-9,12,24-25H,1-3H2,(H,22,23)(H2,14,16,17)/t5-,8-,9-,12-/m1/s1"  
DU8  InChIKey          InChI                 1.03   HSUVCMYSEUNGIN-JJNLEZRASA-N  
DU8  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n([C@@H]3O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H]3O)c(SCCC(O)=O)nc12"  
DU8  SMILES            CACTVS                3.385  "Nc1ncnc2n([CH]3O[CH](CN=[N+]=[N-])[CH](O)[CH]3O)c(SCCC(O)=O)nc12"  
DU8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(c(n2)SCCC(=O)O)[C@H]3[C@@H]([C@@H]([C@H](O3)CN=[N+]=[N-])O)O)N"  
DU8  SMILES            "OpenEye OEToolkits"  2.0.6  "c1nc(c2c(n1)n(c(n2)SCCC(=O)O)C3C(C(C(O3)CN=[N+]=[N-])O)O)N"  
#
_pdbx_chem_comp_identifier.comp_id          DU8
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(azidomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanylpropanoic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DU8  "Create component"  2018-01-30  RCSB  
DU8  "Initial release"   2019-03-13  RCSB  
##
