data_C58
# 
_chem_comp.id                                    C58 
_chem_comp.name                                  "(2S)-3-phenyl-N~1~-[2-(pyridin-4-yl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-yl]propane-1,2-diamine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H25 N5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-12-20 
_chem_comp.pdbx_modified_date                    2013-02-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.554 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     C58 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZH8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
C58 C    C    C 0 1 N N S 16.201 16.812 15.226 -2.882 0.436  -0.019 C    C58 1  
C58 N    N    N 0 1 N N N 15.087 15.964 14.777 -3.103 -0.370 1.189  N    C58 2  
C58 S    S    S 0 1 Y N N 16.703 18.067 8.557  3.926  -2.533 -0.082 S    C58 3  
C58 C1   C1   C 0 1 N N N 17.539 16.300 14.594 -1.423 0.894  -0.067 C1   C58 4  
C58 N1   N1   N 0 1 N N N 17.423 16.144 13.151 -0.542 -0.273 0.026  N1   C58 5  
C58 C2   C2   C 0 1 Y N N 17.356 17.208 12.340 0.831  -0.107 0.004  C2   C58 6  
C58 N2   N2   N 0 1 Y N N 17.470 18.433 12.878 1.361  1.105  0.009  N2   C58 7  
C58 C3   C3   C 0 1 Y N N 17.363 19.514 12.096 2.678  1.278  -0.013 C3   C58 8  
C58 N3   N3   N 0 1 Y N N 17.108 19.509 10.781 3.518  0.259  -0.041 N3   C58 9  
C58 C4   C4   C 0 1 Y N N 17.002 18.290 10.258 3.069  -1.001 -0.048 C4   C58 10 
C58 N4   N4   N 0 1 Y N N 18.210 23.308 13.901 4.226  5.204  0.007  N4   C58 11 
C58 C5   C5   C 0 1 Y N N 17.126 17.077 10.936 1.694  -1.235 -0.024 C5   C58 12 
C58 C6   C6   C 0 1 Y N N 16.994 15.941 10.026 1.366  -2.655 -0.033 C6   C58 13 
C58 C7   C7   C 0 1 Y N N 16.762 16.335 8.755  2.433  -3.456 -0.062 C7   C58 14 
C58 C8   C8   C 0 1 N N N 16.557 15.433 7.577  2.365  -4.973 -0.078 C8   C58 15 
C58 C9   C9   C 0 1 N N N 17.022 14.028 7.908  0.966  -5.409 0.363  C9   C58 16 
C58 C10  C10  C 0 1 N N N 16.560 13.609 9.287  -0.075 -4.634 -0.451 C10  C58 17 
C58 C11  C11  C 0 1 N N N 17.133 14.492 10.383 -0.068 -3.170 -0.009 C11  C58 18 
C58 C12  C12  C 0 1 Y N N 17.620 20.833 12.730 3.223  2.658  -0.006 C12  C58 19 
C58 C13  C13  C 0 1 Y N N 17.951 20.933 14.075 4.601  2.886  -0.028 C13  C58 20 
C58 C14  C14  C 0 1 Y N N 18.235 22.176 14.607 5.065  4.187  -0.020 C14  C58 21 
C58 C15  C15  C 0 1 Y N N 17.886 23.204 12.610 2.919  5.032  0.029  C15  C58 22 
C58 C16  C16  C 0 1 Y N N 17.585 22.008 11.990 2.370  3.766  0.023  C16  C58 23 
C58 C17  C17  C 0 1 N N N 16.368 16.809 16.762 -3.800 1.660  0.009  C17  C58 24 
C58 C18  C18  C 0 1 Y N N 17.459 17.754 17.199 -5.237 1.212  -0.068 C18  C58 25 
C58 C19  C19  C 0 1 Y N N 17.163 19.057 17.567 -5.941 0.946  1.091  C19  C58 26 
C58 C20  C20  C 0 1 Y N N 18.163 19.926 17.968 -7.259 0.535  1.021  C20  C58 27 
C58 C21  C21  C 0 1 Y N N 19.471 19.502 18.008 -7.873 0.392  -0.209 C21  C58 28 
C58 C22  C22  C 0 1 Y N N 19.780 18.211 17.647 -7.169 0.659  -1.369 C22  C58 29 
C58 C23  C23  C 0 1 Y N N 18.780 17.342 17.245 -5.852 1.074  -1.298 C23  C58 30 
C58 H    H    H 0 1 N N N 16.034 17.847 14.893 -3.104 -0.164 -0.902 H    C58 31 
C58 HN   HN   H 0 1 N N N 14.233 16.292 15.182 -2.556 -1.217 1.164  HN   C58 32 
C58 HNA  HNA  H 0 1 N N N 15.020 16.003 13.780 -2.905 0.165  2.021  HNA  C58 33 
C58 H1   H1   H 0 1 N N N 18.337 17.025 14.812 -1.236 1.416  -1.005 H1   C58 34 
C58 H1A  H1A  H 0 1 N N N 17.795 15.327 15.039 -1.225 1.566  0.768  H1A  C58 35 
C58 HN1  HN1  H 0 1 N N N 18.219 15.615 12.858 -0.922 -1.163 0.104  HN1  C58 36 
C58 H8   H8   H 0 1 N N N 15.488 15.411 7.318  2.560  -5.338 -1.086 H8   C58 37 
C58 H8A  H8A  H 0 1 N N N 17.134 15.815 6.722  3.107  -5.379 0.610  H8A  C58 38 
C58 H9   H9   H 0 1 N N N 16.611 13.329 7.164  0.844  -6.478 0.188  H9   C58 39 
C58 H9A  H9A  H 0 1 N N N 18.121 13.996 7.873  0.834  -5.194 1.424  H9A  C58 40 
C58 H10  H10  H 0 1 N N N 15.462 13.667 9.325  0.171  -4.695 -1.510 H10  C58 41 
C58 H10A H10A H 0 0 N N N 16.879 12.572 9.466  -1.063 -5.061 -0.280 H10A C58 42 
C58 H11  H11  H 0 1 N N N 18.199 14.254 10.517 -0.466 -3.092 1.003  H11  C58 43 
C58 H11A H11A H 0 0 N N N 16.593 14.298 11.321 -0.679 -2.579 -0.690 H11A C58 44 
C58 H13  H13  H 0 1 N N N 17.986 20.051 14.697 5.294  2.058  -0.050 H13  C58 45 
C58 H14  H14  H 0 1 N N N 18.492 22.235 15.654 6.129  4.373  -0.037 H14  C58 46 
C58 H15  H15  H 0 1 N N N 17.858 24.106 12.017 2.269  5.894  0.052  H15  C58 47 
C58 H16  H16  H 0 1 N N N 17.325 21.986 10.942 1.299  3.633  0.041  H16  C58 48 
C58 H17  H17  H 0 1 N N N 15.420 17.118 17.226 -3.640 2.212  0.935  H17  C58 49 
C58 H17A H17A H 0 0 N N N 16.623 15.791 17.092 -3.573 2.303  -0.841 H17A C58 50 
C58 H19  H19  H 0 1 N N N 16.139 19.399 17.541 -5.461 1.058  2.052  H19  C58 51 
C58 H20  H20  H 0 1 N N N 17.916 20.939 18.250 -7.809 0.327  1.926  H20  C58 52 
C58 H21  H21  H 0 1 N N N 20.252 20.179 18.321 -8.903 0.070  -0.265 H21  C58 53 
C58 H22  H22  H 0 1 N N N 20.806 17.874 17.677 -7.649 0.547  -2.330 H22  C58 54 
C58 H23  H23  H 0 1 N N N 19.033 16.330 16.964 -5.304 1.286  -2.204 H23  C58 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
C58 C   N    SING N N 1  
C58 C   C1   SING N N 2  
C58 C   C17  SING N N 3  
C58 C   H    SING N N 4  
C58 N   HN   SING N N 5  
C58 N   HNA  SING N N 6  
C58 S   C4   SING Y N 7  
C58 S   C7   SING Y N 8  
C58 C1  N1   SING N N 9  
C58 C1  H1   SING N N 10 
C58 C1  H1A  SING N N 11 
C58 N1  C2   SING N N 12 
C58 N1  HN1  SING N N 13 
C58 C2  N2   DOUB Y N 14 
C58 C2  C5   SING Y N 15 
C58 N2  C3   SING Y N 16 
C58 C3  N3   DOUB Y N 17 
C58 C3  C12  SING N N 18 
C58 N3  C4   SING Y N 19 
C58 C4  C5   DOUB Y N 20 
C58 N4  C14  DOUB Y N 21 
C58 N4  C15  SING Y N 22 
C58 C5  C6   SING Y N 23 
C58 C6  C7   DOUB Y N 24 
C58 C6  C11  SING N N 25 
C58 C7  C8   SING N N 26 
C58 C8  C9   SING N N 27 
C58 C8  H8   SING N N 28 
C58 C8  H8A  SING N N 29 
C58 C9  C10  SING N N 30 
C58 C9  H9   SING N N 31 
C58 C9  H9A  SING N N 32 
C58 C10 C11  SING N N 33 
C58 C10 H10  SING N N 34 
C58 C10 H10A SING N N 35 
C58 C11 H11  SING N N 36 
C58 C11 H11A SING N N 37 
C58 C12 C13  DOUB Y N 38 
C58 C12 C16  SING Y N 39 
C58 C13 C14  SING Y N 40 
C58 C13 H13  SING N N 41 
C58 C14 H14  SING N N 42 
C58 C15 C16  DOUB Y N 43 
C58 C15 H15  SING N N 44 
C58 C16 H16  SING N N 45 
C58 C17 C18  SING N N 46 
C58 C17 H17  SING N N 47 
C58 C17 H17A SING N N 48 
C58 C18 C19  DOUB Y N 49 
C58 C18 C23  SING Y N 50 
C58 C19 C20  SING Y N 51 
C58 C19 H19  SING N N 52 
C58 C20 C21  DOUB Y N 53 
C58 C20 H20  SING N N 54 
C58 C21 C22  SING Y N 55 
C58 C21 H21  SING N N 56 
C58 C22 C23  DOUB Y N 57 
C58 C22 H22  SING N N 58 
C58 C23 H23  SING N N 59 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
C58 SMILES           ACDLabs              12.01 "n1ccc(cc1)c2nc(c3c(n2)sc4c3CCCC4)NCC(N)Cc5ccccc5"                                                                                                                                  
C58 InChI            InChI                1.03  "InChI=1S/C24H25N5S/c25-18(14-16-6-2-1-3-7-16)15-27-23-21-19-8-4-5-9-20(19)30-24(21)29-22(28-23)17-10-12-26-13-11-17/h1-3,6-7,10-13,18H,4-5,8-9,14-15,25H2,(H,27,28,29)/t18-/m0/s1" 
C58 InChIKey         InChI                1.03  NRHASZRDWOUMFD-SFHVURJKSA-N                                                                                                                                                         
C58 SMILES_CANONICAL CACTVS               3.370 "N[C@H](CNc1nc(nc2sc3CCCCc3c12)c4ccncc4)Cc5ccccc5"                                                                                                                                  
C58 SMILES           CACTVS               3.370 "N[CH](CNc1nc(nc2sc3CCCCc3c12)c4ccncc4)Cc5ccccc5"                                                                                                                                   
C58 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@@H](CNc2c3c4c(sc3nc(n2)c5ccncc5)CCCC4)N"                                                                                                                             
C58 SMILES           "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(CNc2c3c4c(sc3nc(n2)c5ccncc5)CCCC4)N"                                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
C58 "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-3-phenyl-N~1~-[2-(pyridin-4-yl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-yl]propane-1,2-diamine" 
C58 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-3-phenyl-N1-(2-pyridin-4-yl-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-yl)propane-1,2-diamine"    
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
C58 "Create component" 2012-12-20 EBI  
C58 "Initial release"  2013-02-22 RCSB 
# 
