data_A1IM8
# 
_chem_comp.id                                    A1IM8 
_chem_comp.name                                  "(2~{R})-2-azanyl-~{N}-methyl-3-pyridin-4-yl-propanamide" 
_chem_comp.type                                  "D-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C9 H13 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-08-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        179.219 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1IM8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9EOR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1IM8 C4  C1  C 0 1 Y N N N N N -22.579 -15.341 57.748 1.939  -1.338 0.090  C4  A1IM8 1  
A1IM8 C5  C2  C 0 1 Y N N N N N -21.922 -14.208 57.314 3.283  -1.328 0.410  C5  A1IM8 2  
A1IM8 C6  C3  C 0 1 Y N N N N N -23.751 -13.473 56.179 3.485  0.878  -0.225 C6  A1IM8 3  
A1IM8 N   N   N 0 1 N N N Y Y N -24.882 -16.649 60.309 -0.589 1.658  0.795  N4  A1IM8 4  
A1IM8 CA  CA  C 0 1 N N R N Y N -24.271 -17.324 59.172 -0.928 0.273  0.439  CA2 A1IM8 5  
A1IM8 C   C   C 0 1 N N N N Y Y -24.585 -18.814 59.200 -2.396 0.184  0.111  C3  A1IM8 6  
A1IM8 O   O   O 0 1 N N N N Y Y -23.666 -19.620 59.253 -3.013 1.184  -0.188 O3  A1IM8 7  
A1IM8 CB2 C6  C 0 1 N N N N N N -24.707 -16.731 57.829 -0.106 -0.156 -0.778 CB2 A1IM8 8  
A1IM8 CG2 C7  C 0 1 Y N N N N N -23.904 -15.541 57.372 1.355  -0.185 -0.413 CG2 A1IM8 9  
A1IM8 CD2 C8  C 0 1 Y N N N N N -24.479 -14.577 56.549 2.149  0.941  -0.571 CD2 A1IM8 10 
A1IM8 NZ  N2  N 0 1 Y N N N N N -22.488 -13.275 56.546 4.008  -0.238 0.246  NZ  A1IM8 11 
A1IM8 N5  N3  N 0 1 N N N N N N -25.854 -19.177 59.069 -3.024 -1.008 0.150  N5  A1IM8 12 
A1IM8 C13 C9  C 0 1 N N N N N N -26.363 -20.412 59.623 -4.451 -1.095 -0.169 C13 A1IM8 13 
A1IM8 H1  H1  H 0 1 N N N N N N -22.072 -16.063 58.371 1.351  -2.233 0.227  H1  A1IM8 14 
A1IM8 H7  H7  H 0 1 N N N N N N -20.893 -14.069 57.612 3.746  -2.223 0.799  H2  A1IM8 15 
A1IM8 H3  H3  H 0 1 N N N N N N -24.228 -12.728 55.559 4.110  1.750  -0.346 H3  A1IM8 16 
A1IM8 H   H   H 0 1 N N N Y Y N -24.566 -17.073 61.158 -0.789 2.286  0.032  H4  A1IM8 17 
A1IM8 H2  H2  H 0 1 N Y N Y Y N -24.623 -15.683 60.302 -1.071 1.943  1.634  H5  A1IM8 18 
A1IM8 HA  HA  H 0 1 N N N N Y N -23.179 -17.212 59.245 -0.703 -0.384 1.279  H7  A1IM8 19 
A1IM8 H8  H8  H 0 1 N N N N N N -25.759 -16.420 57.918 -0.421 -1.150 -1.097 H8  A1IM8 20 
A1IM8 H9  H9  H 0 1 N N N N N N -24.620 -17.517 57.064 -0.264 0.553  -1.591 H9  A1IM8 21 
A1IM8 H10 H10 H 0 1 N N N N N N -25.495 -14.697 56.202 1.727  1.858  -0.956 H10 A1IM8 22 
A1IM8 H11 H11 H 0 1 N N N N N N -26.480 -18.577 58.571 -2.531 -1.809 0.389  H11 A1IM8 23 
A1IM8 H12 H12 H 0 1 N N N N N N -27.435 -20.504 59.393 -5.017 -0.477 0.527  H12 A1IM8 24 
A1IM8 H13 H13 H 0 1 N N N N N N -25.820 -21.262 59.184 -4.618 -0.743 -1.187 H13 A1IM8 25 
A1IM8 H14 H14 H 0 1 N N N N N N -26.221 -20.410 60.714 -4.780 -2.131 -0.085 H14 A1IM8 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1IM8 C6  NZ  DOUB Y N 1  
A1IM8 C6  CD2 SING Y N 2  
A1IM8 NZ  C5  SING Y N 3  
A1IM8 CD2 CG2 DOUB Y N 4  
A1IM8 C5  C4  DOUB Y N 5  
A1IM8 CG2 C4  SING Y N 6  
A1IM8 CG2 CB2 SING N N 7  
A1IM8 CB2 CA  SING N N 8  
A1IM8 N5  C   SING N N 9  
A1IM8 N5  C13 SING N N 10 
A1IM8 CA  C   SING N N 11 
A1IM8 CA  N   SING N N 12 
A1IM8 C   O   DOUB N N 13 
A1IM8 C4  H1  SING N N 14 
A1IM8 C5  H7  SING N N 15 
A1IM8 C6  H3  SING N N 16 
A1IM8 N   H   SING N N 17 
A1IM8 N   H2  SING N N 18 
A1IM8 CA  HA  SING N N 19 
A1IM8 CB2 H8  SING N N 20 
A1IM8 CB2 H9  SING N N 21 
A1IM8 CD2 H10 SING N N 22 
A1IM8 N5  H11 SING N N 23 
A1IM8 C13 H12 SING N N 24 
A1IM8 C13 H13 SING N N 25 
A1IM8 C13 H14 SING N N 26 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1IM8 InChI            InChI                1.06  "InChI=1S/C9H13N3O/c1-11-9(13)8(10)6-7-2-4-12-5-3-7/h2-5,8H,6,10H2,1H3,(H,11,13)/t8-/m1/s1" 
A1IM8 InChIKey         InChI                1.06  LJVDSZALHNBLNR-MRVPVSSYSA-N                                                                 
A1IM8 SMILES_CANONICAL CACTVS               3.385 "CNC(=O)[C@H](N)Cc1ccncc1"                                                                  
A1IM8 SMILES           CACTVS               3.385 "CNC(=O)[CH](N)Cc1ccncc1"                                                                   
A1IM8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC(=O)[C@@H](Cc1ccncc1)N"                                                                 
A1IM8 SMILES           "OpenEye OEToolkits" 2.0.7 "CNC(=O)C(Cc1ccncc1)N"                                                                      
# 
_pdbx_chem_comp_identifier.comp_id           A1IM8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R})-2-azanyl-~{N}-methyl-3-pyridin-4-yl-propanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1IM8 "Create component"    2024-08-31 PDBE 
A1IM8 "Modify linking type" 2024-09-02 PDBE 
A1IM8 "Initial release"     2024-09-11 RCSB 
A1IM8 "Modify PCM"          2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1IM8 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               C-terminal 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
