data_9X8
# 
_chem_comp.id                                    9X8 
_chem_comp.name                                  " thioacetyl-ADP-ribose" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H25 N5 O14 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-07-22 
_chem_comp.pdbx_modified_date                    2017-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        617.418 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9X8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5OJN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9X8 C1  C1  C 0 1 Y N N 20.296 31.723 -15.344 6.513  -2.179 0.141  C1  9X8 1  
9X8 C2  C2  C 0 1 Y N N 19.375 32.604 -14.927 6.750  -2.865 -1.062 C2  9X8 2  
9X8 C3  C3  C 0 1 Y N N 18.880 33.548 -15.762 7.546  -4.022 -1.020 C3  9X8 3  
9X8 C4  C4  C 0 1 Y N N 19.869 31.223 -13.324 5.497  -1.158 -1.528 C4  9X8 4  
9X8 N1  N1  N 0 1 Y N N 19.333 33.623 -17.005 8.036  -4.412 0.153  N1  9X8 5  
9X8 N2  N2  N 0 1 Y N N 20.831 31.761 -16.606 7.042  -2.647 1.267  N2  9X8 6  
9X8 C5  C5  C 0 1 N N N 14.038 16.173 -10.992 -7.800 -4.755 -0.735 C5  9X8 7  
9X8 C6  C6  C 0 1 N N N 14.170 17.684 -10.700 -7.957 -3.423 -0.048 C6  9X8 8  
9X8 S1  S1  S 0 1 N N N 12.817 18.778 -10.683 -9.047 -3.244 1.108  S1  9X8 9  
9X8 O1  O1  O 0 1 N N N 15.439 18.067 -10.620 -7.180 -2.386 -0.406 O1  9X8 10 
9X8 C7  C7  C 0 1 N N R 15.669 19.449 -10.462 -7.386 -1.133 0.299  C7  9X8 11 
9X8 C8  C8  C 0 1 N N R 15.923 20.149 -11.824 -6.916 0.070  -0.563 C8  9X8 12 
9X8 O2  O2  O 0 1 N N N 14.957 19.820 -12.921 -7.145 -0.171 -1.953 O2  9X8 13 
9X8 C9  C9  C 0 1 N N S 17.069 19.455 -9.692  -6.459 -1.036 1.529  C9  9X8 14 
9X8 O3  O3  O 0 1 N N N 17.279 18.350 -8.513  -6.060 -2.346 1.940  O3  9X8 15 
9X8 O4  O4  O 0 1 N N N 17.988 19.313 -10.795 -5.307 -0.276 1.145  O4  9X8 16 
9X8 C10 C10 C 0 1 N N R 17.272 19.549 -12.123 -5.400 0.089  -0.241 C10 9X8 17 
9X8 C11 C11 C 0 1 N N N 18.184 20.269 -13.118 -4.828 1.491  -0.461 C11 9X8 18 
9X8 O5  O5  O 0 1 N N N 18.470 21.567 -12.652 -3.412 1.462  -0.272 O5  9X8 19 
9X8 P1  P1  P 0 1 N N N 18.588 22.775 -13.548 -2.480 2.766  -0.425 P1  9X8 20 
9X8 O6  O6  O 0 1 N N N 19.738 22.615 -14.503 -2.696 3.373  -1.757 O6  9X8 21 
9X8 O7  O7  O 0 1 N N N 17.254 23.089 -14.143 -2.859 3.833  0.719  O7  9X8 22 
9X8 O8  O8  O 0 1 N N N 18.916 23.882 -12.480 -0.934 2.342  -0.273 O8  9X8 23 
9X8 P2  P2  P 0 1 N N N 20.396 24.405 -11.951 0.463  3.066  -0.613 P2  9X8 24 
9X8 O9  O9  O 0 1 N N N 21.213 23.166 -11.853 0.419  4.469  -0.142 O9  9X8 25 
9X8 O10 O10 O 0 1 N N N 19.991 25.127 -10.721 0.706  3.042  -2.204 O10 9X8 26 
9X8 O11 O11 O 0 1 N N N 20.931 25.310 -13.095 1.664  2.290  0.126  O11 9X8 27 
9X8 C12 C12 C 0 1 N N N 20.275 26.573 -13.447 3.017  2.749  0.106  C12 9X8 28 
9X8 C13 C13 C 0 1 N N R 21.219 27.414 -14.252 3.896  1.782  0.901  C13 9X8 29 
9X8 O12 O12 O 0 1 N N N 20.608 28.676 -14.618 4.020  0.524  0.203  O12 9X8 30 
9X8 C14 C14 C 0 1 N N S 22.541 27.833 -13.449 5.339  2.323  0.999  C14 9X8 31 
9X8 O13 O13 O 0 1 N N N 23.699 27.394 -14.216 5.546  2.974  2.254  O13 9X8 32 
9X8 C15 C15 C 0 1 N N R 22.435 29.359 -13.346 6.222  1.060  0.891  C15 9X8 33 
9X8 O14 O14 O 0 1 N N N 23.667 29.990 -13.568 7.004  0.893  2.076  O14 9X8 34 
9X8 C16 C16 C 0 1 N N R 21.538 29.758 -14.520 5.208  -0.095 0.742  C16 9X8 35 
9X8 N3  N3  N 0 1 Y N N 20.623 30.909 -14.366 5.721  -1.107 -0.184 N3  9X8 36 
9X8 N4  N4  N 0 1 Y N N 19.131 32.279 -13.639 6.102  -2.190 -2.041 N4  9X8 37 
9X8 C17 C17 C 0 1 Y N N 20.318 32.715 -17.451 7.786  -3.733 1.258  C17 9X8 38 
9X8 N5  N5  N 0 1 N N N 17.903 34.418 -15.383 7.814  -4.740 -2.172 N5  9X8 39 
9X8 H1  H1  H 0 1 N N N 19.857 30.706 -12.376 4.906  -0.447 -2.085 H1  9X8 40 
9X8 H2  H2  H 0 1 N N N 12.982 15.926 -11.179 -8.509 -5.467 -0.314 H2  9X8 41 
9X8 H3  H3  H 0 1 N N N 14.637 15.917 -11.879 -7.992 -4.638 -1.802 H3  9X8 42 
9X8 H4  H4  H 0 1 N N N 14.401 15.599 -10.127 -6.784 -5.123 -0.588 H4  9X8 43 
9X8 H7  H7  H 0 1 N N N 14.895 19.967 -9.877  -8.430 -1.021 0.590  H7  9X8 44 
9X8 H8  H8  H 0 1 N N N 16.002 21.237 -11.683 -7.397 0.994  -0.243 H8  9X8 45 
9X8 H9  H9  H 0 1 N N N 14.110 20.203 -12.723 -8.076 -0.297 -2.182 H9  9X8 46 
9X8 H10 H10 H 0 1 N N N 17.193 20.448 -9.235  -6.979 -0.535 2.346  H10 9X8 47 
9X8 H11 H11 H 0 1 N N N 16.645 18.500 -7.821  -5.475 -2.355 2.710  H11 9X8 48 
9X8 H12 H12 H 0 1 N N N 17.081 18.553 -12.549 -4.873 -0.637 -0.860 H12 9X8 49 
9X8 H13 H13 H 0 1 N N N 17.680 20.334 -14.094 -5.053 1.820  -1.475 H13 9X8 50 
9X8 H14 H14 H 0 1 N N N 19.122 19.705 -13.227 -5.276 2.182  0.253  H14 9X8 51 
9X8 H15 H15 H 0 1 N N N 17.333 23.144 -15.088 -2.741 3.503  1.620  H15 9X8 52 
9X8 H16 H16 H 0 1 N N N 20.331 24.672 -9.960  0.747  2.153  -2.582 H16 9X8 53 
9X8 H17 H17 H 0 1 N N N 19.996 27.110 -12.529 3.369  2.796  -0.925 H17 9X8 54 
9X8 H18 H18 H 0 1 N N N 19.372 26.365 -14.039 3.070  3.741  0.554  H18 9X8 55 
9X8 H19 H19 H 0 1 N N N 21.524 26.863 -15.154 3.481  1.625  1.897  H19 9X8 56 
9X8 H20 H20 H 0 1 N N N 22.523 27.378 -12.448 5.548  3.006  0.175  H20 9X8 57 
9X8 H21 H21 H 0 1 N N N 24.494 27.634 -13.755 6.437  3.333  2.369  H21 9X8 58 
9X8 H22 H22 H 0 1 N N N 21.976 29.651 -12.390 6.867  1.118  0.015  H22 9X8 59 
9X8 H23 H23 H 0 1 N N N 24.266 29.774 -12.863 7.616  1.622  2.249  H23 9X8 60 
9X8 H24 H24 H 0 1 N N N 22.139 29.857 -15.436 4.995  -0.543 1.712  H24 9X8 61 
9X8 H25 H25 H 0 1 N N N 20.673 32.771 -18.470 8.204  -4.085 2.190  H25 9X8 62 
9X8 H26 H26 H 0 1 N N N 17.669 35.012 -16.152 7.450  -4.446 -3.022 H26 9X8 63 
9X8 H27 H27 H 0 1 N N N 17.093 33.906 -15.099 8.365  -5.537 -2.130 H27 9X8 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9X8 C17 N1  DOUB Y N 1  
9X8 C17 N2  SING Y N 2  
9X8 N1  C3  SING Y N 3  
9X8 N2  C1  DOUB Y N 4  
9X8 C3  N5  SING N N 5  
9X8 C3  C2  DOUB Y N 6  
9X8 C1  C2  SING Y N 7  
9X8 C1  N3  SING Y N 8  
9X8 C2  N4  SING Y N 9  
9X8 O12 C16 SING N N 10 
9X8 O12 C13 SING N N 11 
9X8 C16 N3  SING N N 12 
9X8 C16 C15 SING N N 13 
9X8 O6  P1  DOUB N N 14 
9X8 N3  C4  SING Y N 15 
9X8 C13 C14 SING N N 16 
9X8 C13 C12 SING N N 17 
9X8 O13 C14 SING N N 18 
9X8 O7  P1  SING N N 19 
9X8 N4  C4  DOUB Y N 20 
9X8 O14 C15 SING N N 21 
9X8 P1  O5  SING N N 22 
9X8 P1  O8  SING N N 23 
9X8 C14 C15 SING N N 24 
9X8 C12 O11 SING N N 25 
9X8 C11 O5  SING N N 26 
9X8 C11 C10 SING N N 27 
9X8 O11 P2  SING N N 28 
9X8 O2  C8  SING N N 29 
9X8 O8  P2  SING N N 30 
9X8 C10 C8  SING N N 31 
9X8 C10 O4  SING N N 32 
9X8 P2  O9  DOUB N N 33 
9X8 P2  O10 SING N N 34 
9X8 C8  C7  SING N N 35 
9X8 C5  C6  SING N N 36 
9X8 O4  C9  SING N N 37 
9X8 C6  S1  DOUB N N 38 
9X8 C6  O1  SING N N 39 
9X8 O1  C7  SING N N 40 
9X8 C7  C9  SING N N 41 
9X8 C9  O3  SING N N 42 
9X8 C4  H1  SING N N 43 
9X8 C5  H2  SING N N 44 
9X8 C5  H3  SING N N 45 
9X8 C5  H4  SING N N 46 
9X8 C7  H7  SING N N 47 
9X8 C8  H8  SING N N 48 
9X8 O2  H9  SING N N 49 
9X8 C9  H10 SING N N 50 
9X8 O3  H11 SING N N 51 
9X8 C10 H12 SING N N 52 
9X8 C11 H13 SING N N 53 
9X8 C11 H14 SING N N 54 
9X8 O7  H15 SING N N 55 
9X8 O10 H16 SING N N 56 
9X8 C12 H17 SING N N 57 
9X8 C12 H18 SING N N 58 
9X8 C13 H19 SING N N 59 
9X8 C14 H20 SING N N 60 
9X8 O13 H21 SING N N 61 
9X8 C15 H22 SING N N 62 
9X8 O14 H23 SING N N 63 
9X8 C16 H24 SING N N 64 
9X8 C17 H25 SING N N 65 
9X8 N5  H26 SING N N 66 
9X8 N5  H27 SING N N 67 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9X8 InChI            InChI                1.03  
"InChI=1S/C17H25N5O14P2S/c1-6(39)33-13-11(24)8(35-17(13)26)3-32-38(29,30)36-37(27,28)31-2-7-10(23)12(25)16(34-7)22-5-21-9-14(18)19-4-20-15(9)22/h4-5,7-8,10-13,16-17,23-26H,2-3H2,1H3,(H,27,28)(H,29,30)(H2,18,19,20)/t7-,8-,10-,11-,12-,13-,16-,17+/m1/s1" 
9X8 InChIKey         InChI                1.03  KCGNVGFYYIVLLI-DLFWLGJNSA-N 
9X8 SMILES_CANONICAL CACTVS               3.385 "CC(=S)O[C@H]1[C@@H](O)O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@H]1O" 
9X8 SMILES           CACTVS               3.385 "CC(=S)O[CH]1[CH](O)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH]1O" 
9X8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=S)O[C@@H]1[C@@H]([C@H](O[C@@H]1O)COP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O" 
9X8 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(=S)OC1C(C(OC1O)COP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9X8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 
"~{O}-[(2~{S},3~{R},4~{R},5~{R})-5-[[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-2,4-bis(oxidanyl)oxolan-3-yl] ethanethioate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9X8 "Create component"   2017-07-22 EBI  
9X8 "Other modification" 2017-07-22 EBI  
9X8 "Other modification" 2017-08-04 EBI  
9X8 "Initial release"    2017-11-29 RCSB 
# 
