data_9L8
# 
_chem_comp.id                                    9L8 
_chem_comp.name                                  "(2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(3-naphthalen-2-yl-1~{H}-1,2,4-triazol-5-yl)oxane-3,4-diol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H20 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-01 
_chem_comp.pdbx_modified_date                    2017-09-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        356.376 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9L8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5O56 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9L8 "N2'" N1  N 0 1 N N N 34.030 24.621 26.105 -2.359 2.635  0.749  "N2'" 9L8 1  
9L8 "C2'" C1  C 0 1 N N R 33.908 23.139 26.339 -2.730 1.407  0.032  "C2'" 9L8 2  
9L8 "C3'" C2  C 0 1 N N R 32.802 22.528 25.507 -4.227 1.435  -0.290 "C3'" 9L8 3  
9L8 "O3'" O1  O 0 1 N N N 33.018 22.643 24.048 -4.506 2.526  -1.170 "O3'" 9L8 4  
9L8 "C4'" C3  C 0 1 N N S 32.582 21.118 25.873 -4.617 0.118  -0.966 "C4'" 9L8 5  
9L8 "O4'" O2  O 0 1 N N N 31.396 20.746 25.160 -6.026 0.103  -1.206 "O4'" 9L8 6  
9L8 "C5'" C4  C 0 1 N N R 32.316 20.905 27.396 -4.242 -1.049 -0.049 "C5'" 9L8 7  
9L8 "C6'" C5  C 0 1 N N N 32.284 19.425 27.849 -4.574 -2.371 -0.743 "C6'" 9L8 8  
9L8 "O6'" O3  O 0 1 N N N 33.327 18.669 27.313 -4.333 -3.455 0.156  "O6'" 9L8 9  
9L8 "O5'" O4  O 0 1 N N N 33.370 21.507 28.196 -2.843 -0.998 0.236  "O5'" 9L8 10 
9L8 "C1'" C6  C 0 1 N N R 33.619 22.902 27.846 -2.428 0.191  0.911  "C1'" 9L8 11 
9L8 C1    C7  C 0 1 Y N N 34.750 23.379 28.720 -0.947 0.123  1.184  C1    9L8 12 
9L8 N5    N2  N 0 1 Y N N 34.603 23.955 29.920 -0.003 0.105  0.280  N5    9L8 13 
9L8 C4    C8  C 0 1 Y N N 35.827 24.265 30.384 1.195  0.041  0.878  C4    9L8 14 
9L8 C6    C9  C 0 1 Y N N 36.208 24.921 31.740 2.506  0.004  0.185  C6    9L8 15 
9L8 C7    C10 C 0 1 Y N N 37.572 25.234 31.965 3.671  -0.062 0.926  C7    9L8 16 
9L8 C8    C11 C 0 1 Y N N 37.951 25.788 33.227 4.909  -0.097 0.265  C8    9L8 17 
9L8 C9    C12 C 0 1 Y N N 36.993 25.982 34.227 4.944  -0.064 -1.153 C9    9L8 18 
9L8 C15   C13 C 0 1 Y N N 37.389 26.529 35.476 6.185  -0.100 -1.810 C15   9L8 19 
9L8 C14   C14 C 0 1 Y N N 38.744 26.859 35.685 7.333  -0.165 -1.082 C14   9L8 20 
9L8 C13   C15 C 0 1 Y N N 39.728 26.667 34.696 7.299  -0.197 0.311  C13   9L8 21 
9L8 C12   C16 C 0 1 Y N N 39.337 26.129 33.452 6.115  -0.164 0.983  C12   9L8 22 
9L8 C10   C17 C 0 1 Y N N 35.608 25.650 34.006 3.740  0.003  -1.877 C10   9L8 23 
9L8 C11   C18 C 0 1 Y N N 35.233 25.112 32.747 2.553  0.030  -1.219 C11   9L8 24 
9L8 N3    N3  N 0 1 Y N N 36.699 23.790 29.511 1.016  0.018  2.181  N3    9L8 25 
9L8 N2    N4  N 0 1 Y N N 36.041 23.264 28.478 -0.371 0.076  2.398  N2    9L8 26 
9L8 H1    H1  H 0 1 N N N 34.769 24.988 26.670 -2.549 3.452  0.188  H1    9L8 27 
9L8 H2    H2  H 0 1 N N N 34.232 24.791 25.140 -2.829 2.690  1.640  H2    9L8 28 
9L8 H4    H4  H 0 1 N N N 34.861 22.653 26.084 -2.158 1.339  -0.893 H4    9L8 29 
9L8 H5    H5  H 0 1 N N N 31.880 23.078 25.746 -4.796 1.554  0.632  H5    9L8 30 
9L8 H6    H6  H 0 1 N N N 33.159 23.554 23.819 -5.437 2.600  -1.421 H6    9L8 31 
9L8 H7    H7  H 0 1 N N N 33.439 20.502 25.564 -4.085 0.023  -1.913 H7    9L8 32 
9L8 H8    H8  H 0 1 N N N 31.186 19.838 25.346 -6.344 -0.704 -1.634 H8    9L8 33 
9L8 H9    H9  H 0 1 N N N 31.350 21.367 27.646 -4.806 -0.976 0.881  H9    9L8 34 
9L8 H10   H10 H 0 1 N N N 31.329 18.981 27.530 -5.622 -2.372 -1.041 H10   9L8 35 
9L8 H11   H11 H 0 1 N N N 32.355 19.392 28.946 -3.945 -2.486 -1.627 H11   9L8 36 
9L8 H12   H12 H 0 1 N N N 33.260 17.773 27.622 -4.522 -4.326 -0.218 H12   9L8 37 
9L8 H13   H13 H 0 1 N N N 32.725 23.489 28.103 -2.967 0.280  1.854  H13   9L8 38 
9L8 H15   H15 H 0 1 N N N 38.311 25.057 31.197 3.629  -0.086 2.005  H15   9L8 39 
9L8 H16   H16 H 0 1 N N N 36.661 26.690 36.257 6.228  -0.076 -2.889 H16   9L8 40 
9L8 H17   H17 H 0 1 N N N 39.038 27.274 36.638 8.285  -0.192 -1.591 H17   9L8 41 
9L8 H18   H18 H 0 1 N N N 40.759 26.926 34.886 8.224  -0.249 0.865  H18   9L8 42 
9L8 H19   H19 H 0 1 N N N 40.069 25.973 32.673 6.103  -0.189 2.063  H19   9L8 43 
9L8 H20   H20 H 0 1 N N N 34.872 25.807 34.781 3.760  0.029  -2.957 H20   9L8 44 
9L8 H21   H21 H 0 1 N N N 34.203 24.848 32.558 1.632  0.077  -1.781 H21   9L8 45 
9L8 H3    H3  H 0 1 N N N 36.453 22.855 27.664 -0.824 0.080  3.256  H3    9L8 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9L8 "O3'" "C3'" SING N N 1  
9L8 "O4'" "C4'" SING N N 2  
9L8 "C3'" "C4'" SING N N 3  
9L8 "C3'" "C2'" SING N N 4  
9L8 "C4'" "C5'" SING N N 5  
9L8 "N2'" "C2'" SING N N 6  
9L8 "C2'" "C1'" SING N N 7  
9L8 "O6'" "C6'" SING N N 8  
9L8 "C5'" "C6'" SING N N 9  
9L8 "C5'" "O5'" SING N N 10 
9L8 "C1'" "O5'" SING N N 11 
9L8 "C1'" C1    SING N N 12 
9L8 N2    C1    SING Y N 13 
9L8 N2    N3    SING Y N 14 
9L8 C1    N5    DOUB Y N 15 
9L8 N3    C4    DOUB Y N 16 
9L8 N5    C4    SING Y N 17 
9L8 C4    C6    SING N N 18 
9L8 C6    C7    DOUB Y N 19 
9L8 C6    C11   SING Y N 20 
9L8 C7    C8    SING Y N 21 
9L8 C11   C10   DOUB Y N 22 
9L8 C8    C12   DOUB Y N 23 
9L8 C8    C9    SING Y N 24 
9L8 C12   C13   SING Y N 25 
9L8 C10   C9    SING Y N 26 
9L8 C9    C15   DOUB Y N 27 
9L8 C13   C14   DOUB Y N 28 
9L8 C15   C14   SING Y N 29 
9L8 "N2'" H1    SING N N 30 
9L8 "N2'" H2    SING N N 31 
9L8 "C2'" H4    SING N N 32 
9L8 "C3'" H5    SING N N 33 
9L8 "O3'" H6    SING N N 34 
9L8 "C4'" H7    SING N N 35 
9L8 "O4'" H8    SING N N 36 
9L8 "C5'" H9    SING N N 37 
9L8 "C6'" H10   SING N N 38 
9L8 "C6'" H11   SING N N 39 
9L8 "O6'" H12   SING N N 40 
9L8 "C1'" H13   SING N N 41 
9L8 C7    H15   SING N N 42 
9L8 C15   H16   SING N N 43 
9L8 C14   H17   SING N N 44 
9L8 C13   H18   SING N N 45 
9L8 C12   H19   SING N N 46 
9L8 C10   H20   SING N N 47 
9L8 C11   H21   SING N N 48 
9L8 N2    H3    SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9L8 InChI            InChI                1.03  "InChI=1S/C18H20N4O4/c19-13-15(25)14(24)12(8-23)26-16(13)18-20-17(21-22-18)11-6-5-9-3-1-2-4-10(9)7-11/h1-7,12-16,23-25H,8,19H2,(H,20,21,22)/t12-,13-,14-,15-,16-/m1/s1" 
9L8 InChIKey         InChI                1.03  IMNCDLXOKIGZHY-OXGONZEZSA-N                                                                                                                                             
9L8 SMILES_CANONICAL CACTVS               3.385 "N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1c2[nH]nc(n2)c3ccc4ccccc4c3"                                                                                                  
9L8 SMILES           CACTVS               3.385 "N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1c2[nH]nc(n2)c3ccc4ccccc4c3"                                                                                                          
9L8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)c3nc([nH]n3)[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O)O)N"                                                                                               
9L8 SMILES           "OpenEye OEToolkits" 2.0.6 "c1ccc2cc(ccc2c1)c3nc([nH]n3)C4C(C(C(C(O4)CO)O)O)N"                                                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9L8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R},3~{S},4~{R},5~{R},6~{R})-5-azanyl-2-(hydroxymethyl)-6-(3-naphthalen-2-yl-1~{H}-1,2,4-triazol-5-yl)oxane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9L8 "Create component" 2017-06-01 EBI  
9L8 "Initial release"  2017-09-27 RCSB 
# 
