data_9K8
# 
_chem_comp.id                                    9K8 
_chem_comp.name                                  "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl 4-ethyl-3-fluorosulfonyl-benzoate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C19 H20 F N5 O7 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-05-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        481.455 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9K8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5O4A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9K8 C1  C1  C 0 1 N N N N N N 30.757 9.889  19.760 6.120  1.929  1.732  C1  9K8 1  
9K8 C2  C2  C 0 1 Y N N N N N 30.799 9.358  21.179 5.020  1.060  1.178  C2  9K8 2  
9K8 C3  C3  C 0 1 Y N N N N N 31.601 8.242  21.436 3.760  1.097  1.747  C3  9K8 3  
9K8 O4  O1  O 0 1 N N N N N N 30.802 3.850  25.794 -2.161 -0.717 0.133  O4  9K8 4  
9K8 O5  O2  O 0 1 N N N N N N 33.293 2.042  23.961 -4.973 -2.800 0.676  O5  9K8 5  
9K8 C7  C4  C 0 1 Y N N N N N 30.071 9.873  22.268 5.274  0.232  0.098  C7  9K8 6  
9K8 C8  C5  C 0 1 N N N N N N 31.023 7.649  25.136 1.922  -1.390 -0.383 C8  9K8 7  
9K8 C9  C6  C 0 1 N N N N N N 31.853 5.912  26.510 -0.316 -2.221 -0.415 C9  9K8 8  
9K8 C10 C7  C 0 1 N N R N N N 31.990 4.417  26.386 -1.635 -2.046 0.340  C10 9K8 9  
9K8 C11 C8  C 0 1 N N S N N N 33.189 3.911  25.574 -2.713 -2.991 -0.237 C11 9K8 10 
9K8 C12 C9  C 0 1 N N R N N N 32.541 3.168  24.397 -4.015 -2.161 -0.170 C12 9K8 11 
9K8 C13 C10 C 0 1 N N R N N N 31.198 2.757  24.997 -3.569 -0.813 0.440  C13 9K8 12 
9K8 C14 C11 C 0 1 Y N N N N N 29.633 3.374  23.100 -3.908 1.014  -1.268 C14 9K8 13 
9K8 C15 C12 C 0 1 Y N N N N N 28.609 1.550  22.753 -5.818 1.840  -0.660 C15 9K8 14 
9K8 C16 C13 C 0 1 Y N N N N N 29.487 1.306  23.803 -5.512 0.795  0.228  C16 9K8 15 
9K8 O2  O3  O 0 1 N N N N N N 30.486 8.158  26.087 2.144  -2.121 -1.327 O2  9K8 16 
9K8 C5  C14 C 0 1 Y N N N N N 30.962 8.203  23.760 3.000  -0.538 0.160  C5  9K8 17 
9K8 C4  C15 C 0 1 Y N N N N N 31.719 7.702  22.708 2.749  0.304  1.245  C4  9K8 18 
9K8 C6  C16 C 0 1 Y N N N N N 30.157 9.311  23.534 4.273  -0.566 -0.414 C6  9K8 19 
9K8 S   S1  S 0 1 N N N N N N 29.018 11.190 22.221 6.881  0.199  -0.624 S   9K8 20 
9K8 O1  O4  O 0 1 N N N N N N 29.624 12.287 21.571 7.609  -0.810 0.063  O1  9K8 21 
9K8 O   O5  O 0 1 N N N N N N 28.382 11.359 23.464 6.688  0.194  -2.032 O   9K8 22 
9K8 C   C17 C 0 1 N N N N N N 31.928 10.760 19.351 6.194  3.230  0.930  C   9K8 23 
9K8 O3  O6  O 0 1 N N N N N N 31.734 6.519  25.202 0.694  -1.357 0.170  O3  9K8 24 
9K8 O6  O7  O 0 1 N N N N N N 34.040 3.097  26.375 -2.828 -4.168 0.565  O6  9K8 25 
9K8 N   N1  N 0 1 Y N N N N N 30.153 2.498  24.017 -4.302 0.294  -0.180 N   9K8 26 
9K8 N2  N2  N 0 1 Y N N N N N 29.653 0.151  24.461 -6.364 0.509  1.207  N2  9K8 27 
9K8 C17 C18 C 0 1 Y N N N N N 28.853 -0.801 23.969 -7.481 1.193  1.346  C17 9K8 28 
9K8 N3  N3  N 0 1 Y N N N N N 27.967 -0.717 22.968 -7.811 2.182  0.536  N3  9K8 29 
9K8 C18 C19 C 0 1 Y N N N N N 27.810 0.469  22.337 -7.022 2.540  -0.471 C18 9K8 30 
9K8 N4  N4  N 0 1 N N N N N N 26.958 0.536  21.307 -7.376 3.579  -1.314 N4  9K8 31 
9K8 N1  N5  N 0 1 Y N N N N N 28.732 2.859  22.311 -4.798 1.921  -1.548 N1  9K8 32 
9K8 F   F1  F 0 1 N Y N N N N 28.713 11.389 20.930 7.594  1.597  -0.268 F   9K8 33 
9K8 H1  H1  H 0 1 N N N N N N 30.722 9.027  19.077 5.910  2.158  2.777  H1  9K8 34 
9K8 H2  H2  H 0 1 N N N N N N 29.838 10.483 19.648 7.071  1.402  1.659  H2  9K8 35 
9K8 H3  H3  H 0 1 N N N N N N 32.144 7.787  20.621 3.567  1.748  2.587  H3  9K8 36 
9K8 H4  H4  H 0 1 N N N N N N 32.846 1.624  23.235 -5.242 -3.678 0.372  H4  9K8 37 
9K8 H5  H5  H 0 1 N N N N N N 30.955 6.146  27.101 0.009  -3.259 -0.344 H5  9K8 38 
9K8 H6  H6  H 0 1 N N N N N N 32.741 6.316  27.017 -0.458 -1.955 -1.463 H6  9K8 39 
9K8 H7  H7  H 0 1 N N N N N N 32.094 4.011  27.403 -1.491 -2.237 1.403  H7  9K8 40 
9K8 H8  H8  H 0 1 N N N N N N 33.744 4.777  25.184 -2.480 -3.252 -1.269 H8  9K8 41 
9K8 H9  H9  H 0 1 N N N N N N 32.372 3.873  23.569 -4.426 -2.014 -1.168 H9  9K8 42 
9K8 H10 H10 H 0 1 N N N N N N 31.349 1.864  25.621 -3.723 -0.815 1.518  H10 9K8 43 
9K8 H11 H11 H 0 1 N N N N N N 29.944 4.406  23.036 -2.989 0.858  -1.814 H11 9K8 44 
9K8 H12 H12 H 0 1 N N N N N N 32.405 6.886  22.882 1.766  0.333  1.691  H12 9K8 45 
9K8 H13 H13 H 0 1 N N N N N N 29.593 9.739  24.350 4.472  -1.211 -1.257 H13 9K8 46 
9K8 H15 H15 H 0 1 N N N N N N 31.795 11.088 18.309 5.243  3.757  1.003  H15 9K8 47 
9K8 H16 H16 H 0 1 N N N N N N 31.978 11.640 20.009 6.989  3.859  1.331  H16 9K8 48 
9K8 H17 H17 H 0 1 N N N N N N 32.861 10.184 19.438 6.403  3.001  -0.115 H17 9K8 49 
9K8 H18 H18 H 0 1 N N N N N N 34.774 2.796  25.853 -3.491 -4.797 0.249  H18 9K8 50 
9K8 H19 H19 H 0 1 N N N N N N 28.932 -1.768 24.443 -8.151 0.935  2.152  H19 9K8 51 
9K8 H20 H20 H 0 1 N N N N N N 26.544 -0.362 21.157 -6.791 3.831  -2.045 H20 9K8 52 
9K8 H21 H21 H 0 1 N N N N N N 26.241 1.203  21.510 -8.210 4.055  -1.173 H21 9K8 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9K8 C1  C2  SING N N 1  
9K8 C1  C   SING N N 2  
9K8 C2  C3  DOUB Y N 3  
9K8 C2  C7  SING Y N 4  
9K8 C3  C4  SING Y N 5  
9K8 O4  C10 SING N N 6  
9K8 O4  C13 SING N N 7  
9K8 O5  C12 SING N N 8  
9K8 C7  C6  DOUB Y N 9  
9K8 C7  S   SING N N 10 
9K8 C8  O2  DOUB N N 11 
9K8 C8  C5  SING N N 12 
9K8 C8  O3  SING N N 13 
9K8 C9  C10 SING N N 14 
9K8 C9  O3  SING N N 15 
9K8 C10 C11 SING N N 16 
9K8 C11 C12 SING N N 17 
9K8 C11 O6  SING N N 18 
9K8 C12 C13 SING N N 19 
9K8 C13 N   SING N N 20 
9K8 C14 N   SING Y N 21 
9K8 C14 N1  DOUB Y N 22 
9K8 C15 C16 DOUB Y N 23 
9K8 C15 C18 SING Y N 24 
9K8 C15 N1  SING Y N 25 
9K8 C16 N   SING Y N 26 
9K8 C16 N2  SING Y N 27 
9K8 C5  C4  DOUB Y N 28 
9K8 C5  C6  SING Y N 29 
9K8 S   O1  DOUB N N 30 
9K8 S   O   DOUB N N 31 
9K8 S   F   SING N N 32 
9K8 N2  C17 DOUB Y N 33 
9K8 C17 N3  SING Y N 34 
9K8 N3  C18 DOUB Y N 35 
9K8 C18 N4  SING N N 36 
9K8 C1  H1  SING N N 37 
9K8 C1  H2  SING N N 38 
9K8 C3  H3  SING N N 39 
9K8 O5  H4  SING N N 40 
9K8 C9  H5  SING N N 41 
9K8 C9  H6  SING N N 42 
9K8 C10 H7  SING N N 43 
9K8 C11 H8  SING N N 44 
9K8 C12 H9  SING N N 45 
9K8 C13 H10 SING N N 46 
9K8 C14 H11 SING N N 47 
9K8 C4  H12 SING N N 48 
9K8 C6  H13 SING N N 49 
9K8 C   H15 SING N N 50 
9K8 C   H16 SING N N 51 
9K8 C   H17 SING N N 52 
9K8 O6  H18 SING N N 53 
9K8 C17 H19 SING N N 54 
9K8 N4  H20 SING N N 55 
9K8 N4  H21 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9K8 InChI            InChI                1.03  "InChI=1S/C19H20FN5O7S/c1-2-9-3-4-10(5-12(9)33(20,29)30)19(28)31-6-11-14(26)15(27)18(32-11)25-8-24-13-16(21)22-7-23-17(13)25/h3-5,7-8,11,14-15,18,26-27H,2,6H2,1H3,(H2,21,22,23)/t11-,14-,15-,18-/m1/s1" 
9K8 InChIKey         InChI                1.03  BSCRHVZAWVIUPR-XKLVTHTNSA-N                                                                                                                                                                              
9K8 SMILES_CANONICAL CACTVS               3.385 "CCc1ccc(cc1[S](F)(=O)=O)C(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34"                                                                                                                          
9K8 SMILES           CACTVS               3.385 "CCc1ccc(cc1[S](F)(=O)=O)C(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34"                                                                                                                               
9K8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCc1ccc(cc1S(=O)(=O)F)C(=O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O"                                                                                                                           
9K8 SMILES           "OpenEye OEToolkits" 2.0.6 "CCc1ccc(cc1S(=O)(=O)F)C(=O)OCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O"                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           9K8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl 4-ethyl-3-fluorosulfonyl-benzoate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9K8 "Create component" 2017-05-28 EBI  
9K8 "Initial release"  2018-02-07 RCSB 
9K8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            9K8 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               S 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
