data_8X8
# 
_chem_comp.id                                    8X8 
_chem_comp.name                                  "~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H29 N3 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-03-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        391.461 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8X8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5NH0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8X8 C2  C1  C 0 1 N N N N N N 50.217 12.873 49.492 1.488  -4.147 0.579  C2  8X8 1  
8X8 C3  C2  C 0 1 N N N N N N 48.968 13.037 48.613 1.556  -5.558 -0.010 C3  8X8 2  
8X8 C4  C3  C 0 1 N N N N N N 50.347 14.187 50.283 0.210  -4.001 1.406  C4  8X8 3  
8X8 C5  C4  C 0 1 N N N N N N 49.969 11.700 50.435 2.705  -3.910 1.475  C5  8X8 4  
8X8 O1  O1  O 0 1 N N N N N N 51.383 12.487 48.685 1.483  -3.173 -0.498 O1  8X8 5  
8X8 C36 C5  C 0 1 N N N N N N 52.855 12.682 48.851 1.426  -1.875 -0.147 C36 8X8 6  
8X8 O37 O2  O 0 1 N N N N N N 53.524 12.328 49.839 1.382  -1.564 1.027  O37 8X8 7  
8X8 N38 N1  N 0 1 N N N N N N 53.431 13.285 47.808 1.417  -0.919 -1.098 N38 8X8 8  
8X8 C40 C6  C 0 1 N N S N N N 54.808 13.808 47.802 1.245  0.486  -0.723 C40 8X8 9  
8X8 C42 C7  C 0 1 N N N N N N 55.663 13.068 46.731 2.614  1.110  -0.443 C42 8X8 10 
8X8 C45 C8  C 0 1 N N S N N N 55.892 11.569 46.971 2.429  2.552  0.035  C45 8X8 11 
8X8 C47 C9  C 0 1 N N N N N N 56.736 10.919 45.879 1.861  2.576  1.437  C47 8X8 12 
8X8 O48 O3  O 0 1 N N N N N N 56.467 10.995 44.701 0.940  1.889  1.825  O48 8X8 13 
8X8 N49 N2  N 0 1 N N N N N N 57.745 10.202 46.406 2.525  3.470  2.190  N49 8X8 14 
8X8 C51 C10 C 0 1 N N N N N N 57.708 10.152 47.871 3.577  4.141  1.417  C51 8X8 15 
8X8 C54 C11 C 0 1 N N N N N N 56.711 11.252 48.251 3.798  3.258  0.169  C54 8X8 16 
8X8 C57 C12 C 0 1 N N R N N N 54.570 15.329 47.635 0.565  1.240  -1.867 C57 8X8 17 
8X8 O58 O4  O 0 1 N N N N N N 53.497 15.836 48.512 1.376  1.156  -3.041 O58 8X8 18 
8X8 C66 C13 C 0 1 N N N N N N 55.739 16.125 48.082 -0.783 0.625  -2.143 C66 8X8 19 
8X8 O67 O5  O 0 1 N N N N N N 56.685 16.099 47.335 -0.995 0.080  -3.205 O67 8X8 20 
8X8 N68 N3  N 0 1 N N N N N N 55.616 16.777 49.285 -1.753 0.681  -1.209 N68 8X8 21 
8X8 C70 C14 C 0 1 N N N N N N 56.632 17.537 50.030 -3.063 0.083  -1.477 C70 8X8 22 
8X8 C73 C15 C 0 1 Y N N N N N 56.841 16.853 51.372 -3.959 0.281  -0.281 C73 8X8 23 
8X8 C74 C16 C 0 1 Y N N N N N 56.419 17.500 52.558 -3.985 -0.665 0.727  C74 8X8 24 
8X8 C76 C17 C 0 1 Y N N N N N 57.392 15.569 51.430 -4.751 1.411  -0.190 C76 8X8 25 
8X8 C78 C18 C 0 1 Y N N N N N 57.541 14.951 52.681 -5.573 1.592  0.907  C78 8X8 26 
8X8 C80 C19 C 0 1 Y N N N N N 57.136 15.605 53.855 -5.603 0.643  1.912  C80 8X8 27 
8X8 C82 C20 C 0 1 Y N N N N N 56.565 16.888 53.807 -4.807 -0.484 1.823  C82 8X8 28 
8X8 H1  H1  H 0 1 N N N N N N 48.112 13.325 49.241 0.689  -5.727 -0.648 H1  8X8 29 
8X8 H2  H2  H 0 1 N N N N N N 49.150 13.818 47.860 2.467  -5.662 -0.599 H2  8X8 30 
8X8 H3  H3  H 0 1 N N N N N N 48.748 12.085 48.108 1.560  -6.289 0.799  H3  8X8 31 
8X8 H4  H4  H 0 1 N N N N N N 51.229 14.136 50.938 0.161  -2.996 1.826  H4  8X8 32 
8X8 H5  H5  H 0 1 N N N N N N 50.459 15.027 49.582 -0.658 -4.170 0.768  H5  8X8 33 
8X8 H6  H6  H 0 1 N N N N N N 49.445 14.338 50.894 0.214  -4.732 2.215  H6  8X8 34 
8X8 H7  H7  H 0 1 N N N N N N 50.848 11.556 51.080 2.710  -4.641 2.283  H7  8X8 35 
8X8 H8  H8  H 0 1 N N N N N N 49.087 11.911 51.058 3.616  -4.014 0.886  H8  8X8 36 
8X8 H9  H9  H 0 1 N N N N N N 49.793 10.788 49.847 2.657  -2.905 1.895  H9  8X8 37 
8X8 H10 H10 H 0 1 N N N N N N 52.890 13.389 46.973 1.525  -1.163 -2.031 H10 8X8 38 
8X8 H11 H11 H 0 1 N N N N N N 55.267 13.636 48.787 0.627  0.550  0.173  H11 8X8 39 
8X8 H12 H12 H 0 1 N N N N N N 56.648 13.557 46.690 3.125  0.535  0.329  H12 8X8 40 
8X8 H13 H13 H 0 1 N N N N N N 55.157 13.180 45.761 3.210  1.104  -1.355 H13 8X8 41 
8X8 H14 H14 H 0 1 N N N N N N 54.919 11.059 47.032 1.782  3.100  -0.650 H14 8X8 42 
8X8 H15 H15 H 0 1 N N N N N N 58.447 9.750  45.856 2.334  3.648  3.124  H15 8X8 43 
8X8 H16 H16 H 0 1 N N N N N N 57.359 9.169  48.221 3.250  5.138  1.120  H16 8X8 44 
8X8 H17 H17 H 0 1 N N N N N N 58.701 10.360 48.295 4.494  4.203  2.002  H17 8X8 45 
8X8 H18 H18 H 0 1 N N N N N N 57.248 12.150 48.590 4.595  2.534  0.339  H18 8X8 46 
8X8 H19 H19 H 0 1 N N N N N N 56.044 10.899 49.051 4.009  3.869  -0.709 H19 8X8 47 
8X8 H20 H20 H 0 1 N N N N N N 54.340 15.549 46.582 0.438  2.286  -1.588 H20 8X8 48 
8X8 H21 H21 H 0 1 N N N N N N 53.389 16.770 48.374 1.532  0.252  -3.347 H21 8X8 49 
8X8 H22 H22 H 0 1 N N N N N N 54.713 16.728 49.712 -1.583 1.117  -0.359 H22 8X8 50 
8X8 H23 H23 H 0 1 N N N N N N 57.577 17.549 49.466 -3.509 0.562  -2.348 H23 8X8 51 
8X8 H24 H24 H 0 1 N N N N N N 56.285 18.569 50.187 -2.944 -0.983 -1.669 H24 8X8 52 
8X8 H25 H25 H 0 1 N N N N N N 55.977 18.483 52.497 -3.364 -1.545 0.657  H25 8X8 53 
8X8 H26 H26 H 0 1 N N N N N N 57.698 15.061 50.527 -4.726 2.152  -0.975 H26 8X8 54 
8X8 H27 H27 H 0 1 N N N N N N 57.972 13.962 52.741 -6.190 2.475  0.978  H27 8X8 55 
8X8 H28 H28 H 0 1 N N N N N N 57.265 15.115 54.809 -6.246 0.785  2.769  H28 8X8 56 
8X8 H29 H29 H 0 1 N N N N N N 56.247 17.388 54.710 -4.828 -1.222 2.611  H29 8X8 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8X8 O48 C47 DOUB N N 1  
8X8 C47 N49 SING N N 2  
8X8 C47 C45 SING N N 3  
8X8 N49 C51 SING N N 4  
8X8 C42 C45 SING N N 5  
8X8 C42 C40 SING N N 6  
8X8 C45 C54 SING N N 7  
8X8 O67 C66 DOUB N N 8  
8X8 C57 C40 SING N N 9  
8X8 C57 C66 SING N N 10 
8X8 C57 O58 SING N N 11 
8X8 C40 N38 SING N N 12 
8X8 N38 C36 SING N N 13 
8X8 C51 C54 SING N N 14 
8X8 C66 N68 SING N N 15 
8X8 C3  C2  SING N N 16 
8X8 O1  C36 SING N N 17 
8X8 O1  C2  SING N N 18 
8X8 C36 O37 DOUB N N 19 
8X8 N68 C70 SING N N 20 
8X8 C2  C4  SING N N 21 
8X8 C2  C5  SING N N 22 
8X8 C70 C73 SING N N 23 
8X8 C73 C76 DOUB Y N 24 
8X8 C73 C74 SING Y N 25 
8X8 C76 C78 SING Y N 26 
8X8 C74 C82 DOUB Y N 27 
8X8 C78 C80 DOUB Y N 28 
8X8 C82 C80 SING Y N 29 
8X8 C3  H1  SING N N 30 
8X8 C3  H2  SING N N 31 
8X8 C3  H3  SING N N 32 
8X8 C4  H4  SING N N 33 
8X8 C4  H5  SING N N 34 
8X8 C4  H6  SING N N 35 
8X8 C5  H7  SING N N 36 
8X8 C5  H8  SING N N 37 
8X8 C5  H9  SING N N 38 
8X8 N38 H10 SING N N 39 
8X8 C40 H11 SING N N 40 
8X8 C42 H12 SING N N 41 
8X8 C42 H13 SING N N 42 
8X8 C45 H14 SING N N 43 
8X8 N49 H15 SING N N 44 
8X8 C51 H16 SING N N 45 
8X8 C51 H17 SING N N 46 
8X8 C54 H18 SING N N 47 
8X8 C54 H19 SING N N 48 
8X8 C57 H20 SING N N 49 
8X8 O58 H21 SING N N 50 
8X8 N68 H22 SING N N 51 
8X8 C70 H23 SING N N 52 
8X8 C70 H24 SING N N 53 
8X8 C74 H25 SING N N 54 
8X8 C76 H26 SING N N 55 
8X8 C78 H27 SING N N 56 
8X8 C80 H28 SING N N 57 
8X8 C82 H29 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8X8 InChI            InChI                1.03  "InChI=1S/C20H29N3O5/c1-20(2,3)28-19(27)23-15(11-14-9-10-21-17(14)25)16(24)18(26)22-12-13-7-5-4-6-8-13/h4-8,14-16,24H,9-12H2,1-3H3,(H,21,25)(H,22,26)(H,23,27)/t14-,15-,16+/m0/s1" 
8X8 InChIKey         InChI                1.03  NGJBFZBVEKPTLR-HRCADAONSA-N                                                                                                                                                        
8X8 SMILES_CANONICAL CACTVS               3.385 "CC(C)(C)OC(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@@H](O)C(=O)NCc2ccccc2"                                                                                                                   
8X8 SMILES           CACTVS               3.385 "CC(C)(C)OC(=O)N[CH](C[CH]1CCNC1=O)[CH](O)C(=O)NCc2ccccc2"                                                                                                                         
8X8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)(C)OC(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](C(=O)NCc2ccccc2)O"                                                                                                                    
8X8 SMILES           "OpenEye OEToolkits" 2.0.6 "CC(C)(C)OC(=O)NC(CC1CCNC1=O)C(C(=O)NCc2ccccc2)O"                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           8X8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{tert}-butyl ~{N}-[(2~{S},3~{R})-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]carbamate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8X8 "Create component" 2017-03-21 EBI  
8X8 "Initial release"  2018-05-16 RCSB 
8X8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8X8 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C57 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
