data_8E8
# 
_chem_comp.id                                    8E8 
_chem_comp.name                                  "1-[(3~{R})-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H26 N6 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "Ibrutinib (bound form)" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-10-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        442.513 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8E8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5P9J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8E8 N1  N1  N 0 1 Y N N N N N 17.996 4.906  0.251  0.818  4.478  -0.228 N1  8E8 1  
8E8 C2  C1  C 0 1 Y N N N N N 19.029 5.210  -0.502 2.082  4.239  -0.531 C2  8E8 2  
8E8 N3  N2  N 0 1 Y N N N N N 20.165 5.774  -0.209 2.568  3.022  -0.637 N3  8E8 3  
8E8 C4  C2  C 0 1 Y N N N N N 20.287 6.087  1.106  1.789  1.958  -0.438 C4  8E8 4  
8E8 C5  C3  C 0 1 Y N N N N N 19.244 5.770  2.045  0.436  2.165  -0.112 C5  8E8 5  
8E8 C6  C4  C 0 1 Y N N N N N 18.035 5.202  1.583  -0.036 3.484  -0.011 C6  8E8 6  
8E8 CAA C5  C 0 1 N N N N N N 24.636 11.914 -0.796 8.328  -2.156 1.464  CAA 8E8 7  
8E8 NAB N3  N 0 1 N N N N N N 16.993 4.962  2.344  -1.356 3.741  0.307  NAB 8E8 8  
8E8 OAC O1  O 0 1 N N N N N N 22.896 9.271  -1.719 6.002  -0.933 1.826  OAC 8E8 9  
8E8 CAD C6  C 0 1 N N N N N N 24.926 10.401 -1.225 7.224  -2.393 0.431  CAD 8E8 10 
8E8 CAE C7  C 0 1 Y N N N N N 14.681 8.437  10.029 -7.728 -2.524 -1.281 CAE 8E8 11 
8E8 CAF C8  C 0 1 Y N N N N N 14.539 8.013  8.709  -8.335 -1.954 -0.178 CAF 8E8 12 
8E8 CAG C9  C 0 1 Y N N N N N 15.731 7.994  10.795 -6.375 -2.342 -1.500 CAG 8E8 13 
8E8 CAI C10 C 0 1 Y N N N N N 15.458 7.201  8.143  -7.592 -1.199 0.708  CAI 8E8 14 
8E8 CAJ C11 C 0 1 Y N N N N N 16.634 7.082  10.226 -5.628 -1.583 -0.620 CAJ 8E8 15 
8E8 CAK C12 C 0 1 Y N N N N N 18.227 4.860  6.454  -3.914 0.975  0.102  CAK 8E8 16 
8E8 CAL C13 C 0 1 Y N N N N N 18.403 7.301  6.655  -3.181 -0.716 1.650  CAL 8E8 17 
8E8 CAM C14 C 0 1 Y N N N N N 18.766 4.955  5.197  -2.602 1.251  -0.222 CAM 8E8 18 
8E8 CAN C15 C 0 1 Y N N N N N 19.004 7.377  5.430  -1.868 -0.441 1.334  CAN 8E8 19 
8E8 CAO C16 C 0 1 N N N N N N 24.944 7.933  1.767  4.428  -1.607 -2.343 CAO 8E8 20 
8E8 CAP C17 C 0 1 N N N N N N 23.791 6.994  2.161  3.092  -0.942 -2.007 CAP 8E8 21 
8E8 CAQ C18 C 0 1 N N N N N N 24.375 9.395  1.601  4.866  -2.487 -1.167 CAQ 8E8 22 
8E8 CAR C19 C 0 1 N N N N N N 22.234 8.540  0.826  3.684  -0.913 0.420  CAR 8E8 23 
8E8 NAU N4  N 0 1 Y N N N N N 20.956 6.785  3.152  0.787  -0.044 -0.173 NAU 8E8 24 
8E8 OAV O2  O 0 1 N N N N N N 17.473 5.899  8.446  -5.500 -0.272 1.361  OAV 8E8 25 
8E8 CAW C20 C 0 1 N N N N N N 23.702 9.561  -0.811 5.995  -1.612 0.821  CAW 8E8 26 
8E8 CAY C21 C 0 1 Y N N N N N 16.539 6.777  8.917  -6.234 -1.014 0.491  CAY 8E8 27 
8E8 CAZ C22 C 0 1 Y N N N N N 18.005 6.032  7.186  -4.207 -0.006 1.040  CAZ 8E8 28 
8E8 CBA C23 C 0 1 Y N N N N N 19.109 6.221  4.675  -1.570 0.544  0.393  CBA 8E8 29 
8E8 CBB C24 C 0 1 Y N N N N N 19.757 6.277  3.360  -0.159 0.838  0.047  CBB 8E8 30 
8E8 CBE C25 C 0 1 N N R N N N 22.532 7.127  1.261  3.259  -0.051 -0.773 CBE 8E8 31 
8E8 NBF N5  N 0 1 Y N N N N N 21.240 6.660  1.801  1.987  0.610  -0.471 NBF 8E8 32 
8E8 NBG N6  N 0 1 N N N N N N 23.477 9.237  0.497  4.889  -1.668 0.053  NBG 8E8 33 
8E8 H1  H1  H 0 1 N N N N N N 18.916 4.947  -1.543 2.742  5.077  -0.700 H1  8E8 34 
8E8 H2  H2  H 0 1 N N N N N N 25.492 12.546 -1.077 8.568  -1.094 1.501  H2  8E8 35 
8E8 H3  H3  H 0 1 N N N N N N 23.731 12.273 -1.308 7.984  -2.485 2.445  H3  8E8 36 
8E8 H4  H4  H 0 1 N Y N N N N 24.485 11.964 0.292  9.216  -2.720 1.182  H4  8E8 37 
8E8 H5  H5  H 0 1 N N N N N N 16.261 4.564  1.791  -1.713 4.637  0.208  H5  8E8 38 
8E8 H6  H6  H 0 1 N N N N N N 17.250 4.322  3.068  -1.926 3.024  0.629  H6  8E8 39 
8E8 H7  H7  H 0 1 N N N N N N 25.826 10.031 -0.713 7.567  -2.064 -0.550 H7  8E8 40 
8E8 H8  H8  H 0 1 N N N N N N 25.073 10.340 -2.314 6.983  -3.455 0.394  H8  8E8 41 
8E8 H9  H9  H 0 1 N N N N N N 13.959 9.120  10.453 -8.311 -3.117 -1.971 H9  8E8 42 
8E8 H10 H10 H 0 1 N N N N N N 13.685 8.337  8.133  -9.392 -2.098 -0.009 H10 8E8 43 
8E8 H11 H11 H 0 1 N N N N N N 15.859 8.339  11.810 -5.902 -2.792 -2.361 H11 8E8 44 
8E8 H12 H12 H 0 1 N N N N N N 15.358 6.887  7.114  -8.067 -0.753 1.570  H12 8E8 45 
8E8 H13 H13 H 0 1 N N N N N N 17.401 6.627  10.835 -4.571 -1.441 -0.792 H13 8E8 46 
8E8 H14 H14 H 0 1 N N N N N N 17.978 3.896  6.873  -4.713 1.526  -0.371 H14 8E8 47 
8E8 H15 H15 H 0 1 N N N N N N 18.228 8.201  7.225  -3.413 -1.478 2.379  H15 8E8 48 
8E8 H16 H16 H 0 1 N N N N N N 18.928 4.064  4.608  -2.375 2.014  -0.952 H16 8E8 49 
8E8 H17 H17 H 0 1 N N N N N N 19.388 8.316  5.060  -1.070 -0.993 1.810  H17 8E8 50 
8E8 H18 H18 H 0 1 N N N N N N 25.385 7.598  0.817  4.314  -2.223 -3.235 H18 8E8 51 
8E8 H19 H19 H 0 1 N N N N N N 25.714 7.923  2.553  5.182  -0.840 -2.524 H19 8E8 52 
8E8 H20 H20 H 0 1 N N N N N N 23.500 7.219  3.198  2.766  -0.334 -2.851 H20 8E8 53 
8E8 H21 H21 H 0 1 N N N N N N 24.153 5.957  2.099  2.345  -1.709 -1.802 H21 8E8 54 
8E8 H22 H22 H 0 1 N N N N N N 25.176 10.112 1.366  4.160  -3.308 -1.043 H22 8E8 55 
8E8 H23 H23 H 0 1 N N N N N N 23.843 9.723  2.506  5.861  -2.887 -1.361 H23 8E8 56 
8E8 H24 H24 H 0 1 N N N N N N 21.724 9.072  1.642  3.900  -0.273 1.275  H24 8E8 57 
8E8 H25 H25 H 0 1 N N N N N N 21.583 8.518  -0.061 2.880  -1.604 0.675  H25 8E8 58 
8E8 H26 H26 H 0 1 N N N N N N 22.737 6.546  0.350  4.023  0.701  -0.968 H26 8E8 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8E8 OAC CAW DOUB N N 1  
8E8 CAD CAW SING N N 2  
8E8 CAD CAA SING N N 3  
8E8 CAW NBG SING N N 4  
8E8 C2  N3  DOUB Y N 5  
8E8 C2  N1  SING Y N 6  
8E8 N3  C4  SING Y N 7  
8E8 N1  C6  DOUB Y N 8  
8E8 NBG CAR SING N N 9  
8E8 NBG CAQ SING N N 10 
8E8 CAR CBE SING N N 11 
8E8 C4  NBF SING Y N 12 
8E8 C4  C5  DOUB Y N 13 
8E8 CBE NBF SING N N 14 
8E8 CBE CAP SING N N 15 
8E8 C6  C5  SING Y N 16 
8E8 C6  NAB SING N N 17 
8E8 CAQ CAO SING N N 18 
8E8 CAO CAP SING N N 19 
8E8 NBF NAU SING Y N 20 
8E8 C5  CBB SING Y N 21 
8E8 NAU CBB DOUB Y N 22 
8E8 CBB CBA SING N N 23 
8E8 CBA CAM DOUB Y N 24 
8E8 CBA CAN SING Y N 25 
8E8 CAM CAK SING Y N 26 
8E8 CAN CAL DOUB Y N 27 
8E8 CAK CAZ DOUB Y N 28 
8E8 CAL CAZ SING Y N 29 
8E8 CAZ OAV SING N N 30 
8E8 CAI CAF DOUB Y N 31 
8E8 CAI CAY SING Y N 32 
8E8 OAV CAY SING N N 33 
8E8 CAF CAE SING Y N 34 
8E8 CAY CAJ DOUB Y N 35 
8E8 CAE CAG DOUB Y N 36 
8E8 CAJ CAG SING Y N 37 
8E8 C2  H1  SING N N 38 
8E8 CAA H2  SING N N 39 
8E8 CAA H3  SING N N 40 
8E8 CAA H4  SING N N 41 
8E8 NAB H5  SING N N 42 
8E8 NAB H6  SING N N 43 
8E8 CAD H7  SING N N 44 
8E8 CAD H8  SING N N 45 
8E8 CAE H9  SING N N 46 
8E8 CAF H10 SING N N 47 
8E8 CAG H11 SING N N 48 
8E8 CAI H12 SING N N 49 
8E8 CAJ H13 SING N N 50 
8E8 CAK H14 SING N N 51 
8E8 CAL H15 SING N N 52 
8E8 CAM H16 SING N N 53 
8E8 CAN H17 SING N N 54 
8E8 CAO H18 SING N N 55 
8E8 CAO H19 SING N N 56 
8E8 CAP H20 SING N N 57 
8E8 CAP H21 SING N N 58 
8E8 CAQ H22 SING N N 59 
8E8 CAQ H23 SING N N 60 
8E8 CAR H24 SING N N 61 
8E8 CAR H25 SING N N 62 
8E8 CBE H26 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8E8 InChI            InChI                1.03  "InChI=1S/C25H26N6O2/c1-2-21(32)30-14-6-7-18(15-30)31-25-22(24(26)27-16-28-25)23(29-31)17-10-12-20(13-11-17)33-19-8-4-3-5-9-19/h3-5,8-13,16,18H,2,6-7,14-15H2,1H3,(H2,26,27,28)/t18-/m1/s1" 
8E8 InChIKey         InChI                1.03  ROGRQCNRPWIQJN-GOSISDBHSA-N                                                                                                                                                                 
8E8 SMILES_CANONICAL CACTVS               3.385 "CCC(=O)N1CCC[C@H](C1)n2nc(c3ccc(Oc4ccccc4)cc3)c5c(N)ncnc25"                                                                                                                                
8E8 SMILES           CACTVS               3.385 "CCC(=O)N1CCC[CH](C1)n2nc(c3ccc(Oc4ccccc4)cc3)c5c(N)ncnc25"                                                                                                                                 
8E8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCC[C@H](C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N"                                                                                                                              
8E8 SMILES           "OpenEye OEToolkits" 2.0.6 "CCC(=O)N1CCCC(C1)n2c3c(c(n2)c4ccc(cc4)Oc5ccccc5)c(ncn3)N"                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           8E8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "1-[(3~{R})-3-[4-azanyl-3-(4-phenoxyphenyl)pyrazolo[3,4-d]pyrimidin-1-yl]piperidin-1-yl]propan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8E8 "Create component" 2016-10-20 RCSB 
8E8 "Initial release"  2017-05-24 RCSB 
8E8 "Modify synonyms"  2020-06-05 PDBE 
8E8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      8E8 
_pdbx_chem_comp_synonyms.name         "Ibrutinib (bound form)" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            8E8 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAA 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
