data_7I8
# 
_chem_comp.id                                    7I8 
_chem_comp.name                                  "DL-6-deoxy-6-phosphoryloxymethyl-scyllo-inositol 1,2,4-trisphosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C7 H18 O18 P4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "[(1R,2S,3R,4S,5S,6R)-2,4-bis(oxidanyl)-3,6-diphosphonooxy-5-(phosphonooxymethyl)cyclohexyl] dihydrogen phosphate" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-12 
_chem_comp.pdbx_modified_date                    2024-02-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        514.102 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7I8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PPE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7I8 C1  C1  C 0 1 N N R N N N 11.445 28.789 85.148 0.641  0.737  -0.309 C1  7I8 1  
7I8 O1  O1  O 0 1 N N N N N N 12.742 28.583 85.742 1.096  1.926  0.341  O1  7I8 2  
7I8 C2  C2  C 0 1 N N R N N N 10.876 30.116 85.616 1.601  -0.413 0.002  C2  7I8 3  
7I8 C3  C3  C 0 1 N N S N N N 9.495  30.363 85.030 1.114  -1.686 -0.694 C3  7I8 4  
7I8 C4  C4  C 0 1 N N R N N N 9.613  30.291 83.514 -0.287 -2.039 -0.188 C4  7I8 5  
7I8 C5  C5  C 0 1 N N S N N N 10.209 28.964 83.072 -1.246 -0.889 -0.499 C5  7I8 6  
7I8 P6  P1  P 0 1 N N N N N N 14.465 28.658 81.990 -4.253 2.255  0.328  P6  7I8 7  
7I8 O56 O2  O 0 1 N N N N N N 15.229 27.698 81.101 -3.872 3.595  0.827  O56 7I8 8  
7I8 O46 O3  O 0 1 N N N N N N 13.326 29.344 81.263 -5.483 1.688  1.200  O46 7I8 9  
7I8 O66 O4  O 0 1 N N N N N N 15.369 29.621 82.724 -4.695 2.363  -1.216 O66 7I8 10 
7I8 O36 O5  O 0 1 N N N N N N 13.767 27.755 83.145 -2.998 1.256  0.459  O36 7I8 11 
7I8 O12 O6  O 0 1 N N N N N N 10.796 30.750 89.485 3.991  1.228  1.535  O12 7I8 12 
7I8 O2  O7  O 0 1 N N N N N N 10.793 30.125 87.056 2.909  -0.083 -0.470 O2  7I8 13 
7I8 O22 O8  O 0 1 N N N N N N 12.543 31.701 87.928 5.512  0.275  -0.386 O22 7I8 14 
7I8 C06 C6  C 0 1 N N N N N N 12.333 27.583 83.122 -1.719 1.534  -0.115 C06 7I8 15 
7I8 P2  P2  P 0 1 N N N N N N 11.087 31.323 88.116 4.192  0.013  0.498  P2  7I8 16 
7I8 O32 O9  O 0 1 N N N N N N 10.139 32.438 87.724 4.342  -1.255 1.246  O32 7I8 17 
7I8 C6  C7  C 0 1 N N S N N N 11.620 28.810 83.642 -0.759 0.384  0.196  C6  7I8 18 
7I8 O3  O10 O 0 1 N N N N N N 9.030  31.647 85.430 2.010  -2.760 -0.403 O3  7I8 19 
7I8 O4  O11 O 0 1 N N N N N N 8.309  30.434 82.917 -0.742 -3.228 -0.838 O4  7I8 20 
7I8 O5  O12 O 0 1 N N N N N N 10.232 28.869 81.653 -2.554 -1.219 -0.027 O5  7I8 21 
7I8 P1  P3  P 0 1 N N N N N N 13.309 27.522 86.834 1.484  3.269  -0.459 P1  7I8 22 
7I8 O11 O13 O 0 1 N N N N N N 12.483 26.269 86.646 0.170  3.866  -1.173 O11 7I8 23 
7I8 O21 O14 O 0 1 N N N N N N 13.083 28.186 88.177 2.076  4.355  0.572  O21 7I8 24 
7I8 O31 O15 O 0 1 N N N N N N 14.778 27.318 86.523 2.504  2.955  -1.485 O31 7I8 25 
7I8 P4  P4  P 0 1 N N N N N N 7.516  30.697 81.523 -1.129 -4.570 -0.039 P4  7I8 26 
7I8 O14 O16 O 0 1 N N N N N N 6.818  29.399 81.185 -2.415 -4.290 0.890  O14 7I8 27 
7I8 O24 O17 O 0 1 N N N N N N 6.552  31.836 81.785 -1.471 -5.741 -1.090 O24 7I8 28 
7I8 O34 O18 O 0 1 N N N N N N 8.595  31.064 80.524 0.010  -4.986 0.809  O34 7I8 29 
7I8 H1  H1  H 0 1 N N N N N N 10.758 27.976 85.427 0.608  0.902  -1.386 H1  7I8 30 
7I8 H2  H2  H 0 1 N N N N N N 11.546 30.921 85.281 1.634  -0.578 1.079  H2  7I8 31 
7I8 H3  H3  H 0 1 N N N N N N 8.808  29.577 85.377 1.081  -1.521 -1.771 H3  7I8 32 
7I8 H4  H4  H 0 1 N N N N N N 10.270 31.104 83.172 -0.254 -2.204 0.889  H4  7I8 33 
7I8 H5  H5  H 0 1 N N N N N N 9.586  28.156 83.483 -1.279 -0.724 -1.576 H5  7I8 34 
7I8 H6  H6  H 0 1 N N N N N N 13.297 29.042 80.363 -6.276 2.241  1.167  H6  7I8 35 
7I8 H7  H7  H 0 1 N N N N N N 16.273 29.447 82.491 -4.959 1.520  -1.610 H7  7I8 36 
7I8 H8  H8  H 0 1 N N N N N N 10.052 31.202 89.866 3.886  2.092  1.114  H8  7I8 37 
7I8 H9  H9  H 0 1 N N N N N N 12.600 32.587 87.591 6.325  0.344  0.133  H9  7I8 38 
7I8 H10 H10 H 0 1 N N N N N N 12.012 27.395 82.087 -1.820 1.641  -1.195 H10 7I8 39 
7I8 H11 H11 H 0 1 N N N N N N 12.066 26.721 83.751 -1.325 2.460  0.306  H11 7I8 40 
7I8 H12 H12 H 0 1 N N N N N N 12.205 29.700 83.369 -0.726 0.219  1.273  H12 7I8 41 
7I8 H13 H13 H 0 1 N N N N N N 9.445  31.894 86.248 1.762  -3.601 -0.813 H13 7I8 42 
7I8 H14 H14 H 0 1 N N N N N N 9.709  29.569 81.280 -2.927 -2.017 -0.426 H14 7I8 43 
7I8 H15 H15 H 0 1 N N N N N N 13.045 25.559 86.359 -0.541 4.095  -0.559 H15 7I8 44 
7I8 H16 H16 H 0 1 N N N N N N 13.921 28.358 88.591 2.331  5.191  0.158  H16 7I8 45 
7I8 H17 H17 H 0 1 N N N N N N 7.189  29.037 80.389 -3.201 -4.013 0.399  H17 7I8 46 
7I8 H18 H18 H 0 1 N N N N N N 6.803  32.590 81.265 -1.714 -6.581 -0.677 H18 7I8 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7I8 O34 P4  DOUB N N 1  
7I8 O56 P6  DOUB N N 2  
7I8 O14 P4  SING N N 3  
7I8 O46 P6  SING N N 4  
7I8 P4  O24 SING N N 5  
7I8 P4  O4  SING N N 6  
7I8 O5  C5  SING N N 7  
7I8 P6  O66 SING N N 8  
7I8 P6  O36 SING N N 9  
7I8 O4  C4  SING N N 10 
7I8 C5  C4  SING N N 11 
7I8 C5  C6  SING N N 12 
7I8 C06 O36 SING N N 13 
7I8 C06 C6  SING N N 14 
7I8 C4  C3  SING N N 15 
7I8 C6  C1  SING N N 16 
7I8 C3  O3  SING N N 17 
7I8 C3  C2  SING N N 18 
7I8 C1  C2  SING N N 19 
7I8 C1  O1  SING N N 20 
7I8 C2  O2  SING N N 21 
7I8 O1  P1  SING N N 22 
7I8 O31 P1  DOUB N N 23 
7I8 O11 P1  SING N N 24 
7I8 P1  O21 SING N N 25 
7I8 O2  P2  SING N N 26 
7I8 O32 P2  DOUB N N 27 
7I8 O22 P2  SING N N 28 
7I8 P2  O12 SING N N 29 
7I8 C1  H1  SING N N 30 
7I8 C2  H2  SING N N 31 
7I8 C3  H3  SING N N 32 
7I8 C4  H4  SING N N 33 
7I8 C5  H5  SING N N 34 
7I8 O46 H6  SING N N 35 
7I8 O66 H7  SING N N 36 
7I8 O12 H8  SING N N 37 
7I8 O22 H9  SING N N 38 
7I8 C06 H10 SING N N 39 
7I8 C06 H11 SING N N 40 
7I8 C6  H12 SING N N 41 
7I8 O3  H13 SING N N 42 
7I8 O5  H14 SING N N 43 
7I8 O11 H15 SING N N 44 
7I8 O21 H16 SING N N 45 
7I8 O14 H17 SING N N 46 
7I8 O24 H18 SING N N 47 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7I8 InChI            InChI                1.06  "InChI=1S/C7H18O18P4/c8-3-2(1-22-26(10,11)12)5(23-27(13,14)15)7(25-29(19,20)21)4(9)6(3)24-28(16,17)18/h2-9H,1H2,(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)(H2,19,20,21)/t2-,3-,4-,5+,6+,7+/m0/s1" 
7I8 InChIKey         InChI                1.06  BQHPCPJMCBCUNO-YQHQLQMSSA-N                                                                                                                                                                    
7I8 SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@H](CO[P](O)(O)=O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O)[C@@H]1O[P](O)(O)=O"                                                                                               
7I8 SMILES           CACTVS               3.385 "O[CH]1[CH](CO[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O[P](O)(O)=O"                                                                                                        
7I8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]1[C@@H]([C@H]([C@@H]([C@H]([C@@H]1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)OP(=O)(O)O"                                                                                                     
7I8 SMILES           "OpenEye OEToolkits" 2.0.7 "C(C1C(C(C(C(C1OP(=O)(O)O)OP(=O)(O)O)O)OP(=O)(O)O)O)OP(=O)(O)O"                                                                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           7I8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[(1~{R},2~{S},3~{R},4~{S},5~{S},6~{R})-2,4-bis(oxidanyl)-3,6-diphosphonooxy-5-(phosphonooxymethyl)cyclohexyl] dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7I8 "Create component" 2023-07-12 PDBE 
7I8 "Initial release"  2024-02-28 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      7I8 
_pdbx_chem_comp_synonyms.name         "[(1R,2S,3R,4S,5S,6R)-2,4-bis(oxidanyl)-3,6-diphosphonooxy-5-(phosphonooxymethyl)cyclohexyl] dihydrogen phosphate" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
