data_6T8
# 
_chem_comp.id                                    6T8 
_chem_comp.name                                  "N-((S)-3-(4-(aminomethyl)phenyl)-1-(((R)-4-guanidino-1-(5-hydroxy-1,3,2-dioxaborinan-2-yl)butyl)amino)-1-oxopropan-2-yl)benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H35 B N6 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-06-20 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        510.394 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6T8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LC0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6T8 O24 O1  O 0 1 N N N N N N 82.675 49.861 152.088 2.108   -1.253 -1.678 O24 6T8 1  
6T8 C22 C1  C 0 1 N N N N N N 81.562 50.329 151.941 2.649   -1.652 -0.665 C22 6T8 2  
6T8 C25 C2  C 0 1 Y N N N N N 80.434 49.351 151.767 3.653   -2.735 -0.742 C25 6T8 3  
6T8 C30 C3  C 0 1 Y N N N N N 80.711 48.042 151.447 4.272   -3.200 0.420  C30 6T8 4  
6T8 C29 C4  C 0 1 Y N N N N N 79.719 47.082 151.348 5.208   -4.211 0.342  C29 6T8 5  
6T8 C28 C5  C 0 1 Y N N N N N 78.413 47.422 151.569 5.532   -4.764 -0.885 C28 6T8 6  
6T8 C27 C6  C 0 1 Y N N N N N 78.093 48.722 151.865 4.922   -4.308 -2.039 C27 6T8 7  
6T8 C26 C7  C 0 1 Y N N N N N 79.094 49.689 152.016 3.980   -3.302 -1.974 C26 6T8 8  
6T8 N21 N1  N 0 1 N N N N N N 81.317 51.625 152.148 2.340   -1.103 0.526  N21 6T8 9  
6T8 C18 C8  C 0 1 N N S N N N 82.196 52.492 152.892 1.350   -0.025 0.601  C18 6T8 10 
6T8 C20 C9  C 0 1 N N N N N N 81.765 53.946 152.703 1.823   1.161  -0.241 C20 6T8 11 
6T8 C31 C10 C 0 1 Y N N N N N 81.876 54.493 151.294 3.081   1.733  0.359  C31 6T8 12 
6T8 C36 C11 C 0 1 Y N N N N N 81.234 55.708 151.102 4.316   1.255  -0.038 C36 6T8 13 
6T8 C35 C12 C 0 1 Y N N N N N 81.253 56.339 149.875 5.470   1.780  0.513  C35 6T8 14 
6T8 C34 C13 C 0 1 Y N N N N N 81.923 55.764 148.810 5.390   2.782  1.462  C34 6T8 15 
6T8 C37 C14 C 0 1 N N N N N N 81.870 56.572 147.536 6.648   3.349  2.068  C37 6T8 16 
6T8 N38 N2  N 0 1 N N N N N N 82.494 55.884 146.406 7.007   2.575  3.264  N38 6T8 17 
6T8 C33 C15 C 0 1 Y N N N N N 82.582 54.533 148.985 4.155   3.260  1.860  C33 6T8 18 
6T8 C32 C16 C 0 1 Y N N N N N 82.559 53.894 150.226 3.001   2.739  1.304  C32 6T8 19 
6T8 C17 C17 C 0 1 N N N N N N 82.136 52.228 154.389 0.028   -0.520 0.073  C17 6T8 20 
6T8 O19 O2  O 0 1 N N N N N N 81.105 52.506 154.945 -0.011  -1.497 -0.645 O19 6T8 21 
6T8 N2  N3  N 0 1 N N N N N N 83.218 51.815 155.078 -1.111  0.122  0.399  N2  6T8 22 
6T8 C1  C18 C 0 1 N N R N N N 83.323 51.952 156.538 -2.396  -0.359 -0.113 C1  6T8 23 
6T8 B4  B1  B 0 1 N N N N N N 84.068 53.317 156.870 -2.891  0.592  -1.261 B4  6T8 24 
6T8 O1  O3  O 0 1 N N N N N N 84.105 53.716 158.230 -2.114  0.785  -2.441 O1  6T8 25 
6T8 O3  O4  O 0 1 N N N N N N 83.975 54.389 155.943 -4.134  1.285  -1.156 O3  6T8 26 
6T8 C3  C19 C 0 1 N N N N N N 84.103 50.825 157.214 -3.425  -0.370 1.019  C3  6T8 27 
6T8 C11 C20 C 0 1 N N N N N N 83.173 49.851 157.906 -4.768  -0.872 0.483  C11 6T8 28 
6T8 C12 C21 C 0 1 N N N N N N 82.916 48.653 157.018 -5.797  -0.883 1.615  C12 6T8 29 
6T8 N13 N4  N 0 1 N N N N N N 81.593 48.113 157.275 -7.082  -1.364 1.102  N13 6T8 30 
6T8 C14 C22 C 0 1 N N N N N N 81.319 46.878 157.675 -8.165  -1.461 1.943  C14 6T8 31 
6T8 N15 N5  N 0 1 N N N N N N 82.247 45.982 158.027 -8.042  -1.106 3.266  N15 6T8 32 
6T8 N16 N6  N 0 1 N N N N N N 80.101 46.543 157.662 -9.308  -1.889 1.487  N16 6T8 33 
6T8 C2  C23 C 0 1 N N N N N N 83.404 55.639 156.334 -4.014  2.681  -1.456 C2  6T8 34 
6T8 C4  C24 C 0 1 N N N N N N 83.593 54.999 158.612 -1.946  2.169  -2.772 C4  6T8 35 
6T8 C5  C25 C 0 1 N N N N N N 82.606 55.455 157.577 -3.325  2.842  -2.815 C5  6T8 36 
6T8 O2  O5  O 0 1 N N N N N N 81.621 54.448 157.332 -3.171  4.232  -3.109 O2  6T8 37 
6T8 H1  H1  H 0 1 N N N N N N 81.736 47.754 151.267 4.021   -2.768 1.377  H1  6T8 38 
6T8 H2  H2  H 0 1 N N N N N N 79.976 46.064 151.096 5.688   -4.571 1.239  H2  6T8 39 
6T8 H3  H3  H 0 1 N N N N N N 77.639 46.671 151.511 6.266   -5.555 -0.940 H3  6T8 40 
6T8 H4  H4  H 0 1 N N N N N N 77.057 49.003 151.983 5.179   -4.744 -2.993 H4  6T8 41 
6T8 H5  H5  H 0 1 N N N N N N 78.836 50.692 152.323 3.501   -2.950 -2.876 H5  6T8 42 
6T8 H6  H6  H 0 1 N N N N N N 80.479 52.015 151.767 2.772   -1.421 1.334  H6  6T8 43 
6T8 H7  H7  H 0 1 N N N N N N 83.233 52.375 152.544 1.232   0.289  1.638  H7  6T8 44 
6T8 H8  H8  H 0 1 N N N N N N 82.391 54.571 153.357 2.026   0.827  -1.259 H8  6T8 45 
6T8 H9  H9  H 0 1 N N N N N N 80.713 54.029 153.014 1.048   1.927  -0.258 H9  6T8 46 
6T8 H10 H10 H 0 1 N N N N N N 80.710 56.168 151.927 4.379   0.472  -0.779 H10 6T8 47 
6T8 H11 H11 H 0 1 N N N N N N 80.744 57.283 149.746 6.435   1.406  0.203  H11 6T8 48 
6T8 H12 H12 H 0 1 N N N N N N 82.394 57.525 147.701 7.458   3.292  1.341  H12 6T8 49 
6T8 H13 H13 H 0 1 N N N N N N 80.817 56.771 147.289 6.480   4.390  2.345  H13 6T8 50 
6T8 H14 H14 H 0 1 N N N N N N 82.433 56.459 145.590 7.105   1.595  3.045  H14 6T8 51 
6T8 H15 H15 H 0 1 N N N N N N 83.455 55.704 146.615 7.848   2.936  3.688  H15 6T8 52 
6T8 H17 H17 H 0 1 N N N N N N 83.107 54.081 148.157 4.092   4.042  2.601  H17 6T8 53 
6T8 H18 H18 H 0 1 N N N N N N 83.062 52.948 150.362 2.036   3.113  1.614  H18 6T8 54 
6T8 H19 H19 H 0 1 N N N N N N 83.978 51.400 154.578 -1.080  0.903  0.974  H19 6T8 55 
6T8 H20 H20 H 0 1 N N N N N N 82.315 51.998 156.977 -2.276  -1.369 -0.505 H20 6T8 56 
6T8 H21 H21 H 0 1 N N N N N N 84.685 50.285 156.453 -3.082  -1.030 1.815  H21 6T8 57 
6T8 H22 H22 H 0 1 N N N N N N 84.786 51.259 157.959 -3.546  0.640  1.410  H22 6T8 58 
6T8 H23 H23 H 0 1 N N N N N N 82.219 50.353 158.125 -5.111  -0.212 -0.313 H23 6T8 59 
6T8 H24 H24 H 0 1 N N N N N N 83.634 49.514 158.846 -4.647  -1.882 0.091  H24 6T8 60 
6T8 H25 H25 H 0 1 N N N N N N 83.670 47.879 157.224 -5.453  -1.543 2.412  H25 6T8 61 
6T8 H26 H26 H 0 1 N N N N N N 82.984 48.961 155.964 -5.917  0.127  2.007  H26 6T8 62 
6T8 H27 H27 H 0 1 N N N N N N 80.817 48.729 157.138 -7.169  -1.614 0.169  H27 6T8 63 
6T8 H28 H28 H 0 1 N N N N N N 81.975 45.053 158.278 -7.191  -0.788 3.606  H28 6T8 64 
6T8 H29 H29 H 0 1 N N N N N N 83.213 46.241 158.039 -8.806  -1.175 3.859  H29 6T8 65 
6T8 H30 H30 H 0 1 N N N N N N 79.972 45.589 157.933 -10.073 -1.957 2.080  H30 6T8 66 
6T8 H31 H31 H 0 1 N N N N N N 84.208 56.367 156.519 -5.006  3.132  -1.495 H31 6T8 67 
6T8 H32 H32 H 0 1 N N N N N N 82.751 56.010 155.531 -3.419  3.170  -0.685 H32 6T8 68 
6T8 H33 H33 H 0 1 N N N N N N 84.419 55.722 158.678 -1.328  2.653  -2.016 H33 6T8 69 
6T8 H34 H34 H 0 1 N N N N N N 83.094 54.922 159.589 -1.465  2.256  -3.746 H34 6T8 70 
6T8 H35 H35 H 0 1 N N N N N N 82.142 56.405 157.882 -3.931  2.371  -3.588 H35 6T8 71 
6T8 H36 H36 H 0 1 N N N N N N 81.101 54.316 158.116 -2.740  4.409  -3.957 H36 6T8 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6T8 N38 C37 SING N N 1  
6T8 C37 C34 SING N N 2  
6T8 C34 C33 DOUB Y N 3  
6T8 C34 C35 SING Y N 4  
6T8 C33 C32 SING Y N 5  
6T8 C35 C36 DOUB Y N 6  
6T8 C32 C31 DOUB Y N 7  
6T8 C36 C31 SING Y N 8  
6T8 C31 C20 SING N N 9  
6T8 C29 C30 DOUB Y N 10 
6T8 C29 C28 SING Y N 11 
6T8 C30 C25 SING Y N 12 
6T8 C28 C27 DOUB Y N 13 
6T8 C25 C22 SING N N 14 
6T8 C25 C26 DOUB Y N 15 
6T8 C27 C26 SING Y N 16 
6T8 C22 O24 DOUB N N 17 
6T8 C22 N21 SING N N 18 
6T8 N21 C18 SING N N 19 
6T8 C20 C18 SING N N 20 
6T8 C18 C17 SING N N 21 
6T8 C17 O19 DOUB N N 22 
6T8 C17 N2  SING N N 23 
6T8 N2  C1  SING N N 24 
6T8 O3  C2  SING N N 25 
6T8 O3  B4  SING N N 26 
6T8 C2  C5  SING N N 27 
6T8 C1  B4  SING N N 28 
6T8 C1  C3  SING N N 29 
6T8 B4  O1  SING N N 30 
6T8 C12 N13 SING N N 31 
6T8 C12 C11 SING N N 32 
6T8 C3  C11 SING N N 33 
6T8 N13 C14 SING N N 34 
6T8 O2  C5  SING N N 35 
6T8 C5  C4  SING N N 36 
6T8 N16 C14 DOUB N N 37 
6T8 C14 N15 SING N N 38 
6T8 O1  C4  SING N N 39 
6T8 C30 H1  SING N N 40 
6T8 C29 H2  SING N N 41 
6T8 C28 H3  SING N N 42 
6T8 C27 H4  SING N N 43 
6T8 C26 H5  SING N N 44 
6T8 N21 H6  SING N N 45 
6T8 C18 H7  SING N N 46 
6T8 C20 H8  SING N N 47 
6T8 C20 H9  SING N N 48 
6T8 C36 H10 SING N N 49 
6T8 C35 H11 SING N N 50 
6T8 C37 H12 SING N N 51 
6T8 C37 H13 SING N N 52 
6T8 N38 H14 SING N N 53 
6T8 N38 H15 SING N N 54 
6T8 C33 H17 SING N N 55 
6T8 C32 H18 SING N N 56 
6T8 N2  H19 SING N N 57 
6T8 C1  H20 SING N N 58 
6T8 C3  H21 SING N N 59 
6T8 C3  H22 SING N N 60 
6T8 C11 H23 SING N N 61 
6T8 C11 H24 SING N N 62 
6T8 C12 H25 SING N N 63 
6T8 C12 H26 SING N N 64 
6T8 N13 H27 SING N N 65 
6T8 N15 H28 SING N N 66 
6T8 N15 H29 SING N N 67 
6T8 N16 H30 SING N N 68 
6T8 C2  H31 SING N N 69 
6T8 C2  H32 SING N N 70 
6T8 C4  H33 SING N N 71 
6T8 C4  H34 SING N N 72 
6T8 C5  H35 SING N N 73 
6T8 O2  H36 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6T8 InChI            InChI                1.03  "InChI=1S/C25H35BN6O5/c27-14-18-10-8-17(9-11-18)13-21(31-23(34)19-5-2-1-3-6-19)24(35)32-22(7-4-12-30-25(28)29)26-36-15-20(33)16-37-26/h1-3,5-6,8-11,20-22,33H,4,7,12-16,27H2,(H,31,34)(H,32,35)(H4,28,29,30)/t21-,22-/m0/s1" 
6T8 InChIKey         InChI                1.03  DYKCMHQIYUDANF-VXKWHMMOSA-N                                                                                                                                                                                                  
6T8 SMILES_CANONICAL CACTVS               3.385 "NCc1ccc(C[C@H](NC(=O)c2ccccc2)C(=O)N[C@@H](CCCNC(N)=N)B3OCC(O)CO3)cc1"                                                                                                                                                      
6T8 SMILES           CACTVS               3.385 "NCc1ccc(C[CH](NC(=O)c2ccccc2)C(=O)N[CH](CCCNC(N)=N)B3OCC(O)CO3)cc1"                                                                                                                                                         
6T8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "[H]/N=C(/N)\NCCC[C@@H](B1OCC(CO1)O)NC(=O)[C@H](Cc2ccc(cc2)CN)NC(=O)c3ccccc3"                                                                                                                                                
6T8 SMILES           "OpenEye OEToolkits" 2.0.5 "B1(OCC(CO1)O)C(CCCNC(=N)N)NC(=O)C(Cc2ccc(cc2)CN)NC(=O)c3ccccc3"                                                                                                                                                             
# 
_pdbx_chem_comp_identifier.comp_id           6T8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.5 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(2~{S})-3-[4-(aminomethyl)phenyl]-1-[[(1~{R})-4-carbamimidamido-1-(5-oxidanyl-1,3,2-dioxaborinan-2-yl)butyl]amino]-1-oxidanylidene-propan-2-yl]benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6T8 "Create component" 2016-06-20 EBI  
6T8 "Initial release"  2016-07-06 RCSB 
6T8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6T8 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               B4 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
