data_6L8
# 
_chem_comp.id                                    6L8 
_chem_comp.name                                  "(2R)-3-{3-[3,5-bis(trifluoromethyl)phenyl]-1H-1,2,4-triazol-1-yl}-2-(pyrimidin-5-yl)propanamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H12 F6 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-28 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        430.307 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6L8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5JLJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6L8 C9    C1  C 0 1 Y N N N N N -35.144 70.124 26.721 -4.167 0.613  -0.066 C9    6L8 1  
6L8 C10   C2  C 0 1 Y N N N N N -33.791 69.830 26.774 -3.999 -0.757 0.024  C10   6L8 2  
6L8 C11   C3  C 0 1 Y N N N N N -32.891 70.765 27.272 -2.740 -1.289 0.221  C11   6L8 3  
6L8 C6    C4  C 0 1 Y N N N N N -33.342 71.993 27.726 -1.638 -0.443 0.328  C6    6L8 4  
6L8 C7    C5  C 0 1 Y N N N N N -34.699 72.294 27.672 -1.814 0.936  0.236  C7    6L8 5  
6L8 C8    C6  C 0 1 Y N N N N N -35.603 71.352 27.170 -3.077 1.457  0.040  C8    6L8 6  
6L8 C12   C7  C 0 1 N N N N N N -37.071 71.673 27.101 -3.268 2.948  -0.061 C12   6L8 7  
6L8 C13   C8  C 0 1 N N N N N N -33.312 68.497 26.283 -5.192 -1.671 -0.092 C13   6L8 8  
6L8 F2    F1  F 0 1 N N N N N N -34.296 67.614 26.295 -6.347 -0.907 -0.285 F2    6L8 9  
6L8 F1    F2  F 0 1 N N N N N N -32.884 68.622 25.051 -5.015 -2.533 -1.179 F1    6L8 10 
6L8 F3    F3  F 0 1 N N N N N N -32.301 68.091 27.021 -5.320 -2.421 1.082  F3    6L8 11 
6L8 F6    F4  F 0 1 N N N N N N -37.456 71.971 28.315 -4.624 3.233  -0.259 F6    6L8 12 
6L8 F5    F5  F 0 1 N N N N N N -37.851 70.679 26.687 -2.833 3.555  1.122  F5    6L8 13 
6L8 F4    F6  F 0 1 N N N N N N -37.196 72.711 26.293 -2.526 3.443  -1.139 F4    6L8 14 
6L8 C5    C9  C 0 1 Y N N N N N -32.356 72.973 28.253 -0.283 -1.009 0.540  C5    6L8 15 
6L8 N3    N1  N 0 1 Y N N N N N -31.004 72.817 28.307 0.012  -2.311 0.645  N3    6L8 16 
6L8 C4    C10 C 0 1 Y N N N N N -30.437 73.915 28.848 1.297  -2.461 0.827  C4    6L8 17 
6L8 N2    N2  N 0 1 Y N N N N N -31.441 74.745 29.115 1.866  -1.241 0.844  N2    6L8 18 
6L8 N4    N3  N 0 1 Y N N N N N -32.667 74.177 28.755 0.828  -0.315 0.651  N4    6L8 19 
6L8 C3    C11 C 0 1 N N N N N N -31.527 76.104 29.725 3.288  -0.940 1.023  C3    6L8 20 
6L8 C2    C12 C 0 1 N N R N N N -30.958 77.221 28.834 3.779  -0.084 -0.147 C2    6L8 21 
6L8 "C1'" C13 C 0 1 Y N N N N N -31.100 76.875 27.396 5.208  0.328  0.097  "C1'" 6L8 22 
6L8 "C4'" C14 C 0 1 Y N N N N N -29.949 76.629 26.655 5.556  1.667  0.180  "C4'" 6L8 23 
6L8 "N2'" N4  N 0 1 Y N N N N N -30.081 76.322 25.356 6.821  1.991  0.395  "N2'" 6L8 24 
6L8 "C3'" C15 C 0 1 Y N N N N N -31.291 76.253 24.764 7.743  1.060  0.531  "C3'" 6L8 25 
6L8 "N1'" N5  N 0 1 Y N N N N N -32.414 76.485 25.459 7.449  -0.223 0.459  "N1'" 6L8 26 
6L8 "C2'" C16 C 0 1 Y N N N N N -32.349 76.795 26.763 6.205  -0.623 0.251  "C2'" 6L8 27 
6L8 C1    C17 C 0 1 N N N N N N -31.604 78.577 29.090 3.698  -0.883 -1.422 C1    6L8 28 
6L8 O1    O1  O 0 1 N N N N N N -30.865 79.561 29.153 3.288  -2.024 -1.398 O1    6L8 29 
6L8 N1    N6  N 0 1 N N N N N N -32.939 78.726 29.232 4.081  -0.329 -2.590 N1    6L8 30 
6L8 H1    H1  H 0 1 N N N N N N -35.840 69.397 26.330 -5.153 1.024  -0.225 H1    6L8 31 
6L8 H2    H2  H 0 1 N N N N N N -31.837 70.533 27.305 -2.610 -2.359 0.292  H2    6L8 32 
6L8 H3    H3  H 0 1 N N N N N N -35.054 73.254 28.017 -0.963 1.597  0.319  H3    6L8 33 
6L8 H4    H4  H 0 1 N N N N N N -29.386 74.085 29.027 1.815  -3.401 0.943  H4    6L8 34 
6L8 H5    H5  H 0 1 N N N N N N -30.966 76.096 30.671 3.430  -0.395 1.956  H5    6L8 35 
6L8 H6    H6  H 0 1 N N N N N N -32.585 76.327 29.928 3.855  -1.870 1.055  H6    6L8 36 
6L8 H7    H7  H 0 1 N N N N N N -29.886 77.313 29.061 3.154  0.804  -0.234 H7    6L8 37 
6L8 H8    H8  H 0 1 N N N N N N -28.973 76.684 27.114 4.805  2.435  0.069  H8    6L8 38 
6L8 H9    H9  H 0 1 N N N N N N -31.356 76.007 23.714 8.767  1.355  0.706  H9    6L8 39 
6L8 H10   H10 H 0 1 N N N N N N -33.254 76.982 27.322 5.970  -1.676 0.193  H10   6L8 40 
6L8 H11   H11 H 0 1 N N N N N N -33.327 79.634 29.388 4.409  0.584  -2.609 H11   6L8 41 
6L8 H12   H12 H 0 1 N N N N N N -33.539 77.928 29.181 4.029  -0.843 -3.411 H12   6L8 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6L8 "C3'" "N2'" DOUB Y N 1  
6L8 "C3'" "N1'" SING Y N 2  
6L8 F1    C13   SING N N 3  
6L8 "N2'" "C4'" SING Y N 4  
6L8 "N1'" "C2'" DOUB Y N 5  
6L8 C13   F2    SING N N 6  
6L8 C13   C10   SING N N 7  
6L8 C13   F3    SING N N 8  
6L8 F4    C12   SING N N 9  
6L8 "C4'" "C1'" DOUB Y N 10 
6L8 F5    C12   SING N N 11 
6L8 C9    C10   DOUB Y N 12 
6L8 C9    C8    SING Y N 13 
6L8 "C2'" "C1'" SING Y N 14 
6L8 C10   C11   SING Y N 15 
6L8 C12   C8    SING N N 16 
6L8 C12   F6    SING N N 17 
6L8 C8    C7    DOUB Y N 18 
6L8 C11   C6    DOUB Y N 19 
6L8 "C1'" C2    SING N N 20 
6L8 C7    C6    SING Y N 21 
6L8 C6    C5    SING N N 22 
6L8 C5    N3    SING Y N 23 
6L8 C5    N4    DOUB Y N 24 
6L8 N3    C4    DOUB Y N 25 
6L8 N4    N2    SING Y N 26 
6L8 C2    C1    SING N N 27 
6L8 C2    C3    SING N N 28 
6L8 C4    N2    SING Y N 29 
6L8 C1    O1    DOUB N N 30 
6L8 C1    N1    SING N N 31 
6L8 N2    C3    SING N N 32 
6L8 C9    H1    SING N N 33 
6L8 C11   H2    SING N N 34 
6L8 C7    H3    SING N N 35 
6L8 C4    H4    SING N N 36 
6L8 C3    H5    SING N N 37 
6L8 C3    H6    SING N N 38 
6L8 C2    H7    SING N N 39 
6L8 "C4'" H8    SING N N 40 
6L8 "C3'" H9    SING N N 41 
6L8 "C2'" H10   SING N N 42 
6L8 N1    H11   SING N N 43 
6L8 N1    H12   SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6L8 SMILES           ACDLabs              12.01 "c3c(cc(c2ncn(CC(C(=O)N)c1cncnc1)n2)cc3C(F)(F)F)C(F)(F)F"                                                                                                
6L8 InChI            InChI                1.03  "InChI=1S/C17H12F6N6O/c18-16(19,20)11-1-9(2-12(3-11)17(21,22)23)15-27-8-29(28-15)6-13(14(24)30)10-4-25-7-26-5-10/h1-5,7-8,13H,6H2,(H2,24,30)/t13-/m0/s1" 
6L8 InChIKey         InChI                1.03  WXDIWOPYNCJTLO-ZDUSSCGKSA-N                                                                                                                              
6L8 SMILES_CANONICAL CACTVS               3.385 "NC(=O)[C@@H](Cn1cnc(n1)c2cc(cc(c2)C(F)(F)F)C(F)(F)F)c3cncnc3"                                                                                           
6L8 SMILES           CACTVS               3.385 "NC(=O)[CH](Cn1cnc(n1)c2cc(cc(c2)C(F)(F)F)C(F)(F)F)c3cncnc3"                                                                                             
6L8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1c(cc(cc1C(F)(F)F)C(F)(F)F)c2ncn(n2)C[C@@H](c3cncnc3)C(=O)N"                                                                                           
6L8 SMILES           "OpenEye OEToolkits" 2.0.4 "c1c(cc(cc1C(F)(F)F)C(F)(F)F)c2ncn(n2)CC(c3cncnc3)C(=O)N"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6L8 "SYSTEMATIC NAME" ACDLabs              12.01 "(2R)-3-{3-[3,5-bis(trifluoromethyl)phenyl]-1H-1,2,4-triazol-1-yl}-2-(pyrimidin-5-yl)propanamide" 
6L8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R})-3-[3-[3,5-bis(trifluoromethyl)phenyl]-1,2,4-triazol-1-yl]-2-pyrimidin-5-yl-propanamide"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6L8 "Create component" 2016-04-28 RCSB 
6L8 "Initial release"  2016-06-29 RCSB 
6L8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            6L8 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C3 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
