data_6H8
# 
_chem_comp.id                                    6H8 
_chem_comp.name                                  "N-[2-(methylamino)-1H-benzimidazol-6-yl]guanidine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H12 N6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-04-11 
_chem_comp.pdbx_modified_date                    2017-05-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        204.232 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6H8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5J9O 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6H8 C2  C1  C 0 1 Y N N 12.614 19.034 90.003 -0.669 0.066  0.167  C2  6H8 1  
6H8 C4  C2  C 0 1 Y N N 12.204 18.554 92.310 1.603  -0.698 0.221  C4  6H8 2  
6H8 C5  C3  C 0 1 N N N 11.385 18.376 94.695 3.507  0.737  -0.098 C5  6H8 3  
6H8 C6  C4  C 0 1 Y N N 13.579 18.541 92.554 1.178  -1.995 -0.056 C6  6H8 4  
6H8 C1  C5  C 0 1 Y N N 13.592 19.728 88.224 -2.874 0.027  -0.039 C1  6H8 5  
6H8 C3  C6  C 0 1 Y N N 11.715 18.736 91.021 0.682  0.331  0.333  C3  6H8 6  
6H8 C8  C7  C 0 1 Y N N 13.982 19.052 90.273 -1.100 -1.240 -0.112 C8  6H8 7  
6H8 N4  N1  N 0 1 N N N 12.509 18.789 95.244 2.773  1.546  -0.809 N4  6H8 8  
6H8 N3  N2  N 0 1 N N N 10.237 18.103 95.454 4.819  1.052  0.167  N3  6H8 9  
6H8 N2  N3  N 0 1 N N N 11.250 18.392 93.342 2.969  -0.433 0.388  N2  6H8 10 
6H8 C7  C8  C 0 1 Y N N 14.482 18.774 91.531 -0.161 -2.269 -0.222 C7  6H8 11 
6H8 N1  N4  N 0 1 Y N N 12.387 19.460 88.696 -1.811 0.849  0.208  N1  6H8 12 
6H8 N5  N5  N 0 1 Y N N 14.585 19.490 89.111 -2.456 -1.200 -0.222 N5  6H8 13 
6H8 N   N6  N 0 1 N N N 13.793 20.236 87.013 -4.194 0.430  -0.084 N   6H8 14 
6H8 C   C9  C 0 1 N N N 12.718 20.493 86.073 -4.539 1.835  0.143  C   6H8 15 
6H8 H1  H1  H 0 1 N N N 13.942 18.347 93.552 1.903  -2.791 -0.141 H1  6H8 16 
6H8 H2  H2  H 0 1 N N N 10.659 18.648 90.815 1.015  1.335  0.547  H2  6H8 17 
6H8 H3  H3  H 0 1 N N N 12.431 18.877 96.237 3.152  2.370  -1.152 H3  6H8 18 
6H8 H4  H4  H 0 1 N N N 10.254 18.220 96.447 5.178  1.909  -0.113 H4  6H8 19 
6H8 H5  H5  H 0 1 N N N 9.401  17.791 95.002 5.386  0.417  0.632  H5  6H8 20 
6H8 H6  H6  H 0 1 N N N 10.312 18.267 93.020 3.535  -1.074 0.846  H6  6H8 21 
6H8 H7  H7  H 0 1 N N N 15.546 18.740 91.711 -0.484 -3.276 -0.437 H7  6H8 22 
6H8 H8  H8  H 0 1 N N N 11.510 19.544 88.222 -1.849 1.803  0.377  H8  6H8 23 
6H8 H10 H10 H 0 1 N N N 14.418 19.607 86.551 -4.892 -0.218 -0.266 H10 6H8 24 
6H8 H11 H11 H 0 1 N N N 13.134 20.912 85.145 -4.206 2.135  1.137  H11 6H8 25 
6H8 H12 H12 H 0 1 N N N 12.195 19.552 85.848 -4.049 2.456  -0.607 H12 6H8 26 
6H8 H13 H13 H 0 1 N N N 12.010 21.210 86.513 -5.619 1.960  0.069  H13 6H8 27 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6H8 C  N   SING N N 1  
6H8 N  C1  SING N N 2  
6H8 C1 N1  SING Y N 3  
6H8 C1 N5  DOUB Y N 4  
6H8 N1 C2  SING Y N 5  
6H8 N5 C8  SING Y N 6  
6H8 C2 C8  DOUB Y N 7  
6H8 C2 C3  SING Y N 8  
6H8 C8 C7  SING Y N 9  
6H8 C3 C4  DOUB Y N 10 
6H8 C7 C6  DOUB Y N 11 
6H8 C4 C6  SING Y N 12 
6H8 C4 N2  SING N N 13 
6H8 N2 C5  SING N N 14 
6H8 C5 N4  DOUB N N 15 
6H8 C5 N3  SING N N 16 
6H8 C6 H1  SING N N 17 
6H8 C3 H2  SING N N 18 
6H8 N4 H3  SING N N 19 
6H8 N3 H4  SING N N 20 
6H8 N3 H5  SING N N 21 
6H8 N2 H6  SING N N 22 
6H8 C7 H7  SING N N 23 
6H8 N1 H8  SING N N 24 
6H8 N  H10 SING N N 25 
6H8 C  H11 SING N N 26 
6H8 C  H12 SING N N 27 
6H8 C  H13 SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6H8 SMILES           ACDLabs              12.01 "c12c(ccc(NC(=N)\N)c1)nc(n2)NC"                                                                  
6H8 InChI            InChI                1.03  "InChI=1S/C9H12N6/c1-12-9-14-6-3-2-5(13-8(10)11)4-7(6)15-9/h2-4H,1H3,(H4,10,11,13)(H2,12,14,15)" 
6H8 InChIKey         InChI                1.03  VXGAAYFONQATFF-UHFFFAOYSA-N                                                                      
6H8 SMILES_CANONICAL CACTVS               3.385 "CNc1[nH]c2cc(NC(N)=N)ccc2n1"                                                                    
6H8 SMILES           CACTVS               3.385 "CNc1[nH]c2cc(NC(N)=N)ccc2n1"                                                                    
6H8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C(/N)\Nc1ccc2c(c1)[nH]c(n2)NC"                                                            
6H8 SMILES           "OpenEye OEToolkits" 2.0.4 "CNc1[nH]c2cc(ccc2n1)NC(=N)N"                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6H8 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-(methylamino)-1H-benzimidazol-6-yl]guanidine"    
6H8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "1-[2-(methylamino)-3~{H}-benzimidazol-5-yl]guanidine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6H8 "Other modification" 2016-04-11 EBI  
6H8 "Initial release"    2017-05-24 RCSB 
# 
