data_5Y8
# 
_chem_comp.id                                    5Y8 
_chem_comp.name                                  "8-[2-azanyl-3-chloranyl-5-(1-methylindazol-5-yl)pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H23 Cl N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-01-05 
_chem_comp.pdbx_modified_date                    2016-01-29 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        410.900 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5Y8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5HBJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5Y8 C1  C1  C  0 1 N N N -3.328 13.966 -5.292  -5.670 2.814  0.835  C1  5Y8 1  
5Y8 C4  C2  C  0 1 Y N N -1.913 12.352 -8.205  -5.428 -0.087 -1.317 C4  5Y8 2  
5Y8 C5  C3  C  0 1 Y N N -3.331 12.111 -8.443  -4.167 -0.198 -0.589 C5  5Y8 3  
5Y8 C6  C4  C  0 1 Y N N -4.056 11.461 -9.457  -3.106 -1.107 -0.623 C6  5Y8 4  
5Y8 C7  C5  C  0 1 Y N N -5.446 11.411 -9.390  -2.024 -0.922 0.224  C7  5Y8 5  
5Y8 C8  C6  C  0 1 Y N N -6.119 11.999 -8.308  -1.997 0.167  1.105  C8  5Y8 6  
5Y8 C11 C7  C  0 1 Y N N -6.227 10.727 -10.451 -0.892 -1.879 0.197  C11 5Y8 7  
5Y8 C12 C8  C  0 1 Y N N -7.005 9.630  -10.087 -1.123 -3.247 0.275  C12 5Y8 8  
5Y8 N13 N1  N  0 1 Y N N -7.724 8.966  -10.974 -0.121 -4.104 0.252  N13 5Y8 9  
5Y8 C16 C9  C  0 1 Y N N -7.000 10.401 -12.714 1.457  -2.356 0.060  C16 5Y8 10 
5Y8 C18 C10 C  0 1 Y N N -6.220 11.137 -11.809 0.432  -1.417 0.086  C18 5Y8 11 
5Y8 C21 C11 C  0 1 N N N -4.237 13.097 -14.217 1.631  1.926  1.099  C21 5Y8 12 
5Y8 C23 C12 C  0 1 N N N -3.238 14.978 -12.830 2.431  3.853  -0.302 C23 5Y8 13 
5Y8 C24 C13 C  0 1 N N N -2.359 15.664 -13.898 3.852  4.095  0.257  C24 5Y8 14 
5Y8 N2  N2  N  0 1 Y N N -3.067 13.249 -6.542  -5.289 1.597  0.115  N2  5Y8 15 
5Y8 N3  N3  N  0 1 Y N N -1.806 13.018 -7.093  -6.048 0.972  -0.880 N3  5Y8 16 
5Y8 C9  C14 C  0 1 Y N N -5.419 12.629 -7.314  -3.028 1.058  1.143  C9  5Y8 17 
5Y8 C10 C15 C  0 1 Y N N -4.018 12.700 -7.359  -4.127 0.893  0.301  C10 5Y8 18 
5Y8 C14 C16 C  0 1 Y N N -7.741 9.315  -12.256 1.140  -3.706 0.153  C14 5Y8 19 
5Y8 N15 N4  N  0 1 N N N -8.516 8.585  -13.148 2.158  -4.653 0.127  N15 5Y8 20 
5Y8 CL  CL1 CL 0 0 N N N -7.077 10.807 -14.398 3.112  -1.849 -0.069 CL  5Y8 21 
5Y8 N19 N5  N  0 1 N N N -5.459 12.230 -12.219 0.708  -0.056 -0.005 N19 5Y8 22 
5Y8 C20 C17 C  0 1 N N N -4.293 12.037 -13.101 1.483  0.403  1.155  C20 5Y8 23 
5Y8 C22 C18 C  0 1 N N N -4.444 14.509 -13.677 2.316  2.319  -0.206 C22 5Y8 24 
5Y8 N25 N6  N  0 1 N N N -3.302 16.133 -14.917 4.583  2.843  0.025  N25 5Y8 25 
5Y8 C26 C19 C  0 1 N N N -4.486 15.496 -14.817 3.740  1.825  -0.228 C26 5Y8 26 
5Y8 O27 O1  O  0 1 N N N -5.442 15.694 -15.540 4.077  0.680  -0.443 O27 5Y8 27 
5Y8 C28 C20 C  0 1 N N N -5.752 14.592 -12.892 1.540  1.776  -1.402 C28 5Y8 28 
5Y8 C29 C21 C  0 1 N N N -5.785 13.582 -11.733 1.395  0.258  -1.265 C29 5Y8 29 
5Y8 H1  H1  H  0 1 N N N -2.375 14.296 -4.852  -6.233 2.547  1.729  H1  5Y8 30 
5Y8 H2  H2  H  0 1 N N N -3.960 14.843 -5.497  -4.772 3.363  1.121  H2  5Y8 31 
5Y8 H3  H3  H  0 1 N N N -3.845 13.298 -4.587  -6.287 3.440  0.190  H3  5Y8 32 
5Y8 H4  H4  H  0 1 N N N -1.098 12.035 -8.838  -5.781 -0.759 -2.085 H4  5Y8 33 
5Y8 H5  H5  H  0 1 N N N -3.537 11.002 -10.285 -3.128 -1.946 -1.302 H5  5Y8 34 
5Y8 H6  H6  H  0 1 N N N -7.197 11.954 -8.259  -1.149 0.303  1.761  H6  5Y8 35 
5Y8 H7  H7  H  0 1 N N N -7.021 9.315  -9.054  -2.136 -3.613 0.357  H7  5Y8 36 
5Y8 H8  H8  H  0 1 N N N -5.025 12.879 -14.953 0.645  2.389  1.146  H8  5Y8 37 
5Y8 H9  H9  H  0 1 N N N -3.253 13.045 -14.707 2.233  2.264  1.942  H9  5Y8 38 
5Y8 H10 H10 H  0 1 N N N -2.717 14.127 -12.367 1.679  4.341  0.318  H10 5Y8 39 
5Y8 H11 H11 H  0 1 N N N -3.548 15.687 -12.048 2.356  4.186  -1.337 H11 5Y8 40 
5Y8 H12 H12 H  0 1 N N N -1.646 14.947 -14.331 4.332  4.917  -0.275 H12 5Y8 41 
5Y8 H13 H13 H  0 1 N N N -1.809 16.510 -13.461 3.805  4.314  1.324  H13 5Y8 42 
5Y8 H14 H14 H  0 1 N N N -5.950 13.076 -6.487  -2.994 1.892  1.827  H14 5Y8 43 
5Y8 H15 H15 H  0 1 N N N -8.983 7.848  -12.659 3.082  -4.369 0.045  H15 5Y8 44 
5Y8 H16 H16 H  0 1 N N N -9.194 9.187  -13.570 1.944  -5.596 0.192  H16 5Y8 45 
5Y8 H17 H17 H  0 1 N N N -4.356 11.040 -13.560 2.470  -0.059 1.138  H17 5Y8 46 
5Y8 H18 H18 H  0 1 N N N -3.375 12.106 -12.498 0.966  0.121  2.072  H18 5Y8 47 
5Y8 H19 H19 H  0 1 N N N -3.094 16.835 -15.598 5.549  2.761  0.051  H19 5Y8 48 
5Y8 H20 H20 H  0 1 N N N -5.858 15.608 -12.483 0.551  2.234  -1.432 H20 5Y8 49 
5Y8 H21 H21 H  0 1 N N N -6.590 14.381 -13.573 2.078  2.009  -2.321 H21 5Y8 50 
5Y8 H22 H22 H  0 1 N N N -5.049 13.880 -10.971 2.383  -0.203 -1.264 H22 5Y8 51 
5Y8 H23 H23 H  0 1 N N N -6.791 13.574 -11.288 0.814  -0.129 -2.102 H23 5Y8 52 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5Y8 O27 C26 DOUB N N 1  
5Y8 N25 C26 SING N N 2  
5Y8 N25 C24 SING N N 3  
5Y8 C26 C22 SING N N 4  
5Y8 CL  C16 SING N N 5  
5Y8 C21 C22 SING N N 6  
5Y8 C21 C20 SING N N 7  
5Y8 C24 C23 SING N N 8  
5Y8 C22 C28 SING N N 9  
5Y8 C22 C23 SING N N 10 
5Y8 N15 C14 SING N N 11 
5Y8 C20 N19 SING N N 12 
5Y8 C28 C29 SING N N 13 
5Y8 C16 C14 DOUB Y N 14 
5Y8 C16 C18 SING Y N 15 
5Y8 C14 N13 SING Y N 16 
5Y8 N19 C18 SING N N 17 
5Y8 N19 C29 SING N N 18 
5Y8 C18 C11 DOUB Y N 19 
5Y8 N13 C12 DOUB Y N 20 
5Y8 C11 C12 SING Y N 21 
5Y8 C11 C7  SING N N 22 
5Y8 C6  C7  DOUB Y N 23 
5Y8 C6  C5  SING Y N 24 
5Y8 C7  C8  SING Y N 25 
5Y8 C5  C4  SING Y N 26 
5Y8 C5  C10 DOUB Y N 27 
5Y8 C8  C9  DOUB Y N 28 
5Y8 C4  N3  DOUB Y N 29 
5Y8 C10 C9  SING Y N 30 
5Y8 C10 N2  SING Y N 31 
5Y8 N3  N2  SING Y N 32 
5Y8 N2  C1  SING N N 33 
5Y8 C1  H1  SING N N 34 
5Y8 C1  H2  SING N N 35 
5Y8 C1  H3  SING N N 36 
5Y8 C4  H4  SING N N 37 
5Y8 C6  H5  SING N N 38 
5Y8 C8  H6  SING N N 39 
5Y8 C12 H7  SING N N 40 
5Y8 C21 H8  SING N N 41 
5Y8 C21 H9  SING N N 42 
5Y8 C23 H10 SING N N 43 
5Y8 C23 H11 SING N N 44 
5Y8 C24 H12 SING N N 45 
5Y8 C24 H13 SING N N 46 
5Y8 C9  H14 SING N N 47 
5Y8 N15 H15 SING N N 48 
5Y8 N15 H16 SING N N 49 
5Y8 C20 H17 SING N N 50 
5Y8 C20 H18 SING N N 51 
5Y8 N25 H19 SING N N 52 
5Y8 C28 H20 SING N N 53 
5Y8 C28 H21 SING N N 54 
5Y8 C29 H22 SING N N 55 
5Y8 C29 H23 SING N N 56 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5Y8 InChI            InChI                1.03  "InChI=1S/C21H23ClN6O/c1-27-16-3-2-13(10-14(16)11-26-27)15-12-25-19(23)17(22)18(15)28-8-5-21(6-9-28)4-7-24-20(21)29/h2-3,10-12H,4-9H2,1H3,(H2,23,25)(H,24,29)" 
5Y8 InChIKey         InChI                1.03  VPJXPDLMACOGIZ-UHFFFAOYSA-N                                                                                                                                    
5Y8 SMILES_CANONICAL CACTVS               3.385 "Cn1ncc2cc(ccc12)c3cnc(N)c(Cl)c3N4CCC5(CCNC5=O)CC4"                                                                                                            
5Y8 SMILES           CACTVS               3.385 "Cn1ncc2cc(ccc12)c3cnc(N)c(Cl)c3N4CCC5(CCNC5=O)CC4"                                                                                                            
5Y8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "Cn1c2ccc(cc2cn1)c3cnc(c(c3N4CCC5(CCNC5=O)CC4)Cl)N"                                                                                                            
5Y8 SMILES           "OpenEye OEToolkits" 2.0.4 "Cn1c2ccc(cc2cn1)c3cnc(c(c3N4CCC5(CCNC5=O)CC4)Cl)N"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5Y8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "8-[2-azanyl-3-chloranyl-5-(1-methylindazol-5-yl)pyridin-4-yl]-2,8-diazaspiro[4.5]decan-1-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5Y8 "Create component" 2016-01-05 EBI  
5Y8 "Initial release"  2016-02-03 RCSB 
# 
