data_5X8
# 
_chem_comp.id                                    5X8 
_chem_comp.name                                  S-adenosyl-L-cysteine 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C13 H18 N6 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-17 
_chem_comp.pdbx_modified_date                    2016-04-01 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        370.384 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5X8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5FEW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5X8 N1    N1  N 0 1 Y N N 52.891 3.497  17.937 -6.244 -1.101 -0.421 N1    5X8 1  
5X8 C5    C1  C 0 1 Y N N 50.805 3.348  18.992 -4.035 -1.574 0.226  C5    5X8 2  
5X8 C8    C2  C 0 1 Y N N 48.744 3.041  19.237 -1.904 -1.352 0.561  C8    5X8 3  
5X8 C2    C3  C 0 1 Y N N 52.207 3.448  16.760 -5.851 0.084  -0.851 C2    5X8 4  
5X8 C6    C4  C 0 1 Y N N 52.181 3.538  19.051 -5.383 -1.957 0.119  C6    5X8 5  
5X8 N3    N2  N 0 1 Y N N 50.902 3.244  16.609 -4.600 0.485  -0.772 N3    5X8 6  
5X8 C4    C5  C 0 1 Y N N 50.260 3.204  17.748 -3.668 -0.303 -0.246 C4    5X8 7  
5X8 O     O1  O 0 1 N N N 48.428 8.041  13.962 7.673  -0.215 0.304  O     5X8 8  
5X8 C     C6  C 0 1 N N N 48.107 7.155  13.095 6.705  -1.141 0.222  C     5X8 9  
5X8 OXT   O2  O 0 1 N N N 48.939 6.653  12.378 6.830  -2.197 0.795  OXT   5X8 10 
5X8 CA    C7  C 0 1 N N R 46.704 6.696  13.198 5.463  -0.864 -0.585 CA    5X8 11 
5X8 N     N3  N 0 1 N N N 46.337 6.221  11.812 4.803  -2.133 -0.920 N     5X8 12 
5X8 CB    C8  C 0 1 N N N 46.494 5.766  14.342 4.507  0.007  0.233  CB    5X8 13 
5X8 SG    S1  S 0 1 N N N 44.902 4.925  14.311 3.012  0.341  -0.739 SG    5X8 14 
5X8 "C5'" C9  C 0 1 N N N 44.891 4.003  15.895 2.020  1.368  0.379  "C5'" 5X8 15 
5X8 "C4'" C10 C 0 1 N N S 45.958 2.910  15.953 0.702  1.741  -0.305 "C4'" 5X8 16 
5X8 "O4'" O3  O 0 1 N N N 47.246 3.572  16.363 -0.099 0.563  -0.496 "O4'" 5X8 17 
5X8 "C3'" C11 C 0 1 N N S 45.848 1.877  17.069 -0.101 2.701  0.594  "C3'" 5X8 18 
5X8 "O3'" O4  O 0 1 N N N 44.843 0.876  16.653 -0.327 3.942  -0.078 "O3'" 5X8 19 
5X8 "C2'" C12 C 0 1 N N R 47.252 1.269  17.160 -1.441 1.963  0.835  "C2'" 5X8 20 
5X8 "O2'" O5  O 0 1 N N N 47.487 0.387  16.047 -2.542 2.872  0.772  "O2'" 5X8 21 
5X8 "C1'" C13 C 0 1 N N R 48.099 2.555  16.788 -1.479 0.964  -0.349 "C1'" 5X8 22 
5X8 N9    N4  N 0 1 Y N N 48.950 3.017  17.914 -2.319 -0.191 -0.022 N9    5X8 23 
5X8 N7    N5  N 0 1 Y N N 49.835 3.307  19.966 -2.913 -2.162 0.704  N7    5X8 24 
5X8 N6    N6  N 0 1 N N N 52.857 3.640  20.225 -5.804 -3.197 0.567  N6    5X8 25 
5X8 H1    H1  H 0 1 N N N 47.776 2.860  19.680 -0.889 -1.567 0.857  H1    5X8 26 
5X8 H2    H2  H 0 1 N N N 52.783 3.589  15.858 -6.584 0.749  -1.284 H2    5X8 27 
5X8 H3    H3  H 0 1 N N N 49.364 8.200  13.922 8.451  -0.438 0.833  H3    5X8 28 
5X8 H4    H4  H 0 1 N N N 46.090 7.587  13.396 5.735  -0.342 -1.503 H4    5X8 29 
5X8 H5    H5  H 0 1 N N N 45.392 5.894  11.811 4.541  -2.636 -0.086 H5    5X8 30 
5X8 H6    H6  H 0 1 N N N 46.429 6.978  11.165 4.003  -1.979 -1.515 H6    5X8 31 
5X8 H8    H8  H 0 1 N N N 47.289 5.006  14.321 4.235  -0.514 1.150  H8    5X8 32 
5X8 H9    H9  H 0 1 N N N 46.563 6.343  15.276 4.996  0.949  0.481  H9    5X8 33 
5X8 H10   H10 H 0 1 N N N 45.070 4.713  16.716 1.810  0.812  1.293  H10   5X8 34 
5X8 H11   H11 H 0 1 N N N 43.903 3.537  16.023 2.571  2.276  0.624  H11   5X8 35 
5X8 H12   H12 H 0 1 N N N 46.062 2.417  14.975 0.905  2.211  -1.267 H12   5X8 36 
5X8 H13   H13 H 0 1 N N N 45.570 2.356  18.019 0.419  2.866  1.537  H13   5X8 37 
5X8 H14   H14 H 0 1 N N N 44.752 0.217  17.331 -0.829 4.585  0.442  H14   5X8 38 
5X8 H15   H15 H 0 1 N N N 47.499 0.861  18.151 -1.428 1.436  1.789  H15   5X8 39 
5X8 H16   H16 H 0 1 N N N 47.013 -0.425 16.180 -2.513 3.572  1.439  H16   5X8 40 
5X8 H17   H17 H 0 1 N N N 48.762 2.269  15.958 -1.834 1.454  -1.255 H17   5X8 41 
5X8 H18   H18 H 0 1 N N N 53.840 3.669  20.043 -6.738 -3.450 0.489  H18   5X8 42 
5X8 H19   H19 H 0 1 N N N 52.581 4.477  20.697 -5.166 -3.813 0.961  H19   5X8 43 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5X8 N     CA    SING N N 1  
5X8 OXT   C     DOUB N N 2  
5X8 C     CA    SING N N 3  
5X8 C     O     SING N N 4  
5X8 CA    CB    SING N N 5  
5X8 SG    CB    SING N N 6  
5X8 SG    "C5'" SING N N 7  
5X8 "C5'" "C4'" SING N N 8  
5X8 "C4'" "O4'" SING N N 9  
5X8 "C4'" "C3'" SING N N 10 
5X8 "O2'" "C2'" SING N N 11 
5X8 "O4'" "C1'" SING N N 12 
5X8 N3    C2    DOUB Y N 13 
5X8 N3    C4    SING Y N 14 
5X8 "O3'" "C3'" SING N N 15 
5X8 C2    N1    SING Y N 16 
5X8 "C1'" "C2'" SING N N 17 
5X8 "C1'" N9    SING N N 18 
5X8 "C3'" "C2'" SING N N 19 
5X8 C4    N9    SING Y N 20 
5X8 C4    C5    DOUB Y N 21 
5X8 N9    C8    SING Y N 22 
5X8 N1    C6    DOUB Y N 23 
5X8 C5    C6    SING Y N 24 
5X8 C5    N7    SING Y N 25 
5X8 C6    N6    SING N N 26 
5X8 C8    N7    DOUB Y N 27 
5X8 C8    H1    SING N N 28 
5X8 C2    H2    SING N N 29 
5X8 O     H3    SING N N 30 
5X8 CA    H4    SING N N 31 
5X8 N     H5    SING N N 32 
5X8 N     H6    SING N N 33 
5X8 CB    H8    SING N N 34 
5X8 CB    H9    SING N N 35 
5X8 "C5'" H10   SING N N 36 
5X8 "C5'" H11   SING N N 37 
5X8 "C4'" H12   SING N N 38 
5X8 "C3'" H13   SING N N 39 
5X8 "O3'" H14   SING N N 40 
5X8 "C2'" H15   SING N N 41 
5X8 "O2'" H16   SING N N 42 
5X8 "C1'" H17   SING N N 43 
5X8 N6    H18   SING N N 44 
5X8 N6    H19   SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5X8 InChI            InChI                1.03  "InChI=1S/C13H18N6O5S/c14-5(13(22)23)1-25-2-6-8(20)9(21)12(24-6)19-4-18-7-10(15)16-3-17-11(7)19/h3-6,8-9,12,20-21H,1-2,14H2,(H,22,23)(H2,15,16,17)/t5-,6+,8+,9+,12+/m0/s1" 
5X8 InChIKey         InChI                1.03  RVFHZLGRQFCOKV-MACXSXHHSA-N                                                                                                                                                
5X8 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                         
5X8 SMILES           CACTVS               3.385 "N[CH](CSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                
5X8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CSC[C@@H](C(=O)O)N)O)O)N"                                                                                                  
5X8 SMILES           "OpenEye OEToolkits" 2.0.4 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CSCC(C(=O)O)N)O)O)N"                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5X8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{R})-3-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]-2-azanyl-propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5X8 "Create component" 2015-12-17 EBI  
5X8 "Initial release"  2016-04-06 RCSB 
# 
