data_5J8
# 
_chem_comp.id                                    5J8 
_chem_comp.name                                  
"[[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H32 N7 O17 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-30 
_chem_comp.pdbx_modified_date                    2016-09-30 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        747.437 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5J8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DXY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5J8 C4    C1  C 0 1 Y N N 63.003 107.427 107.279 6.179   -2.238 -0.291 C4    5J8 1  
5J8 C5    C2  C 0 1 Y N N 64.358 106.999 107.361 6.357   -2.768 -1.579 C5    5J8 2  
5J8 C6    C3  C 0 1 Y N N 64.620 105.650 107.109 7.293   -3.803 -1.748 C6    5J8 3  
5J8 C8    C4  C 0 1 Y N N 64.282 109.157 107.810 4.850   -1.215 -1.722 C8    5J8 4  
5J8 N1    N1  N 0 1 Y N N 63.576 104.829 106.801 7.964   -4.229 -0.683 N1    5J8 5  
5J8 N3    N2  N 0 1 Y N N 62.043 106.541 106.967 6.894   -2.731 0.715  N3    5J8 6  
5J8 NBU   N3  N 0 1 N N N 55.590 95.926  108.065 -9.858  -0.716 4.346  NBU   5J8 7  
5J8 CBT   C5  C 0 1 N N N 54.534 96.695  107.460 -9.103  -0.423 3.268  CBT   5J8 8  
5J8 OBV   O1  O 0 1 N N N 53.472 96.169  107.115 -8.884  0.739  2.977  OBV   5J8 9  
5J8 CBR   C6  C 0 1 N N N 54.861 98.199  107.199 -8.566  -1.464 2.476  CBR   5J8 10 
5J8 CBQ   C7  C 0 1 N N N 55.863 98.674  108.230 -7.819  -1.143 1.409  CBQ   5J8 11 
5J8 CBS   C8  C 0 1 N N N 53.647 99.041  107.154 -8.849  -2.888 2.865  CBS   5J8 12 
5J8 CBN   C9  C 0 1 N N N 53.936 100.492 107.307 -8.623  -3.816 1.669  CBN   5J8 13 
5J8 CBO   C10 C 0 1 N N N 55.358 100.958 107.495 -7.255  -3.495 1.051  CBO   5J8 14 
5J8 NBP   N4  N 0 1 N N N 56.407 99.961  107.808 -7.280  -2.099 0.595  NBP   5J8 15 
5J8 CBM   C11 C 0 1 N N R 57.373 100.424 108.728 -6.739  -1.737 -0.717 CBM   5J8 16 
5J8 OBG   O2  O 0 1 N N N 56.744 101.111 109.858 -5.765  -0.679 -0.586 OBG   5J8 17 
5J8 CBF   C12 C 0 1 N N R 58.322 101.412 108.142 -7.850  -1.143 -1.611 CBF   5J8 18 
5J8 OBI   O3  O 0 1 N N N 59.472 100.810 107.545 -8.364  -2.137 -2.500 OBI   5J8 19 
5J8 CBE   C13 C 0 1 N N S 58.712 102.242 109.276 -7.135  -0.025 -2.404 CBE   5J8 20 
5J8 OBJ   O4  O 0 1 N N N 59.837 101.671 109.979 -7.186  -0.295 -3.806 OBJ   5J8 21 
5J8 CBH   C14 C 0 1 N N R 57.508 102.264 110.166 -5.678  -0.077 -1.895 CBH   5J8 22 
5J8 CBK   C15 C 0 1 N N N 56.707 103.536 109.957 -5.098  1.335  -1.795 CBK   5J8 23 
5J8 OBL   O5  O 0 1 N N N 56.401 103.684 108.593 -3.737  1.262  -1.364 OBL   5J8 24 
5J8 PAA   P1  P 0 1 N N N 55.854 105.059 108.006 -2.815  2.564  -1.149 PAA   5J8 25 
5J8 OAC   O6  O 0 1 N N N 55.604 104.925 106.539 -2.801  3.369  -2.391 OAC   5J8 26 
5J8 OAB   O7  O 0 1 N N N 54.627 105.483 108.722 -3.407  3.449  0.058  OAB   5J8 27 
5J8 OAD   O8  O 0 1 N N N 56.944 106.200 108.312 -1.314  2.104  -0.791 OAD   5J8 28 
5J8 PAE   P2  P 0 1 N N N 58.521 106.172 107.989 0.110   2.856  -0.764 PAE   5J8 29 
5J8 OAG   O9  O 0 1 N N N 58.840 105.234 106.835 -0.040  4.171  -0.101 OAG   5J8 30 
5J8 OAF   O10 O 0 1 N N N 59.280 105.818 109.270 0.632   3.071  -2.272 OAF   5J8 31 
5J8 "O5'" O11 O 0 1 N N N 58.899 107.653 107.555 1.173   1.963  0.050  "O5'" 5J8 32 
5J8 "C5'" C16 C 0 1 N N N 58.638 108.727 108.490 2.501   2.405  0.340  "C5'" 5J8 33 
5J8 "C4'" C17 C 0 1 N N R 59.709 109.754 108.325 3.240   1.318  1.123  "C4'" 5J8 34 
5J8 "O4'" O12 O 0 1 N N N 60.994 109.151 108.656 3.434   0.162  0.291  "O4'" 5J8 35 
5J8 "C3'" C18 C 0 1 N N R 59.834 110.226 106.907 4.636   1.826  1.534  "C3'" 5J8 36 
5J8 "O3'" O13 O 0 1 N N N 60.151 111.619 106.911 4.771   1.821  2.957  "O3'" 5J8 37 
5J8 "C2'" C19 C 0 1 N N R 61.007 109.483 106.390 5.613   0.811  0.893  "C2'" 5J8 38 
5J8 "O2'" O14 O 0 1 N N N 61.639 110.138 105.295 6.682   0.497  1.789  "O2'" 5J8 39 
5J8 "P2'" P3  P 0 1 N N N 61.238 109.781 103.752 8.231   0.738  1.423  "P2'" 5J8 40 
5J8 OP1   O15 O 0 1 N N N 61.133 108.250 103.609 8.649   -0.218 0.197  OP1   5J8 41 
5J8 OP3   O16 O 0 1 N N N 62.372 110.347 102.847 8.433   2.152  1.037  OP3   5J8 42 
5J8 OP2   O17 O 0 1 N N N 59.908 110.410 103.427 9.144   0.397  2.705  OP2   5J8 43 
5J8 "C1'" C20 C 0 1 N N R 61.871 109.575 107.601 4.700   -0.421 0.668  "C1'" 5J8 44 
5J8 N9    N5  N 0 1 Y N N 63.014 108.778 107.561 5.224   -1.261 -0.412 N9    5J8 45 
5J8 N7    N6  N 0 1 Y N N 65.121 108.091 107.691 5.516   -2.100 -2.405 N7    5J8 46 
5J8 C2    C21 C 0 1 Y N N 62.335 105.259 106.734 7.763   -3.698 0.510  C2    5J8 47 
5J8 N6    N7  N 0 1 N N N 65.973 105.148 107.176 7.511   -4.365 -2.994 N6    5J8 48 
5J8 H1    H1  H 0 1 N N N 64.589 110.160 108.067 4.110   -0.544 -2.133 H1    5J8 49 
5J8 H2    H2  H 0 1 N N N 55.472 94.944  108.214 -10.226 -0.002 4.889  H2    5J8 50 
5J8 H3    H3  H 0 1 N N N 56.442 96.374  108.337 -10.032 -1.642 4.578  H3    5J8 51 
5J8 H5    H5  H 0 1 N N N 56.132 98.145  109.133 -7.638  -0.101 1.188  H5    5J8 52 
5J8 H7    H7  H 0 1 N N N 53.148 98.884  106.186 -8.184  -3.179 3.679  H7    5J8 53 
5J8 H8    H8  H 0 1 N N N 52.975 98.730  107.968 -9.883  -2.972 3.198  H8    5J8 54 
5J8 H9    H9  H 0 1 N N N 53.555 100.990 106.403 -8.640  -4.853 2.003  H9    5J8 55 
5J8 H10   H10 H 0 1 N N N 55.658 101.459 106.563 -6.474  -3.620 1.801  H10   5J8 56 
5J8 H11   H11 H 0 1 N N N 57.952 99.571  109.111 -6.291  -2.608 -1.196 H11   5J8 57 
5J8 H12   H12 H 0 1 N N N 57.791 102.027 107.400 -8.650  -0.725 -1.000 H12   5J8 58 
5J8 H13   H13 H 0 1 N N N 60.037 101.487 107.191 -9.064  -1.817 -3.085 H13   5J8 59 
5J8 H14   H14 H 0 1 N N N 58.945 103.263 108.940 -7.584  0.944  -2.186 H14   5J8 60 
5J8 H15   H15 H 0 1 N N N 60.070 102.230 110.711 -8.083  -0.334 -4.167 H15   5J8 61 
5J8 H16   H16 H 0 1 N N N 57.840 102.226 111.214 -5.067  -0.693 -2.556 H16   5J8 62 
5J8 H17   H17 H 0 1 N N N 57.298 104.400 110.295 -5.145  1.817  -2.771 H17   5J8 63 
5J8 H18   H18 H 0 1 N N N 55.774 103.480 110.537 -5.676  1.915  -1.075 H18   5J8 64 
5J8 H19   H19 H 0 1 N N N 53.917 105.587 108.100 -3.446  2.984  0.905  H19   5J8 65 
5J8 H20   H20 H 0 1 N N N 59.828 105.058 109.114 0.753   2.250  -2.767 H20   5J8 66 
5J8 H21   H21 H 0 1 N N N 57.656 109.175 108.279 3.029   2.604  -0.592 H21   5J8 67 
5J8 H22   H22 H 0 1 N N N 58.650 108.337 109.519 2.458   3.316  0.936  H22   5J8 68 
5J8 H23   H23 H 0 1 N N N 59.508 110.611 108.985 2.667   1.045  2.009  H23   5J8 69 
5J8 H24   H24 H 0 1 N N N 58.925 110.003 106.329 4.809   2.827  1.139  H24   5J8 70 
5J8 H25   H25 H 0 1 N N N 59.409 112.112 107.240 4.143   2.397  3.414  H25   5J8 71 
5J8 H26   H26 H 0 1 N N N 60.751 108.438 106.161 5.999   1.187  -0.054 H26   5J8 72 
5J8 H27   H27 H 0 1 N N N 61.786 107.944 102.991 8.542   -1.162 0.381  H27   5J8 73 
5J8 H28   H28 H 0 1 N N N 60.018 111.039 102.724 10.092  0.520  2.557  H28   5J8 74 
5J8 H29   H29 H 0 1 N N N 62.150 110.628 107.757 4.598   -0.997 1.588  H29   5J8 75 
5J8 H30   H30 H 0 1 N N N 61.543 104.567 106.488 8.330   -4.075 1.348  H30   5J8 76 
5J8 H31   H31 H 0 1 N N N 65.977 104.170 106.969 7.014   -4.045 -3.763 H31   5J8 77 
5J8 H32   H32 H 0 1 N N N 66.541 105.632 106.510 8.160   -5.078 -3.097 H32   5J8 78 
5J8 H4    H4  H 0 1 N N N 53.369 100.839 108.183 -9.406  -3.654 0.928  H4    5J8 79 
5J8 H6    H6  H 0 1 N N N 55.351 101.688 108.318 -7.067  -4.158 0.207  H6    5J8 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5J8 OP3   "P2'" DOUB N N 1  
5J8 OP2   "P2'" SING N N 2  
5J8 OP1   "P2'" SING N N 3  
5J8 "P2'" "O2'" SING N N 4  
5J8 "O2'" "C2'" SING N N 5  
5J8 "C2'" "C3'" SING N N 6  
5J8 "C2'" "C1'" SING N N 7  
5J8 OAC   PAA   DOUB N N 8  
5J8 C2    N1    SING Y N 9  
5J8 C2    N3    DOUB Y N 10 
5J8 N1    C6    DOUB Y N 11 
5J8 OAG   PAE   DOUB N N 12 
5J8 "C3'" "O3'" SING N N 13 
5J8 "C3'" "C4'" SING N N 14 
5J8 N3    C4    SING Y N 15 
5J8 C6    N6    SING N N 16 
5J8 C6    C5    SING Y N 17 
5J8 OBV   CBT   DOUB N N 18 
5J8 CBS   CBR   SING N N 19 
5J8 CBS   CBN   SING N N 20 
5J8 CBR   CBT   SING N N 21 
5J8 CBR   CBQ   DOUB N N 22 
5J8 C4    C5    DOUB Y N 23 
5J8 C4    N9    SING Y N 24 
5J8 CBN   CBO   SING N N 25 
5J8 C5    N7    SING Y N 26 
5J8 CBT   NBU   SING N N 27 
5J8 CBO   NBP   SING N N 28 
5J8 OBI   CBF   SING N N 29 
5J8 "O5'" PAE   SING N N 30 
5J8 "O5'" "C5'" SING N N 31 
5J8 N9    "C1'" SING N N 32 
5J8 N9    C8    SING Y N 33 
5J8 "C1'" "O4'" SING N N 34 
5J8 N7    C8    DOUB Y N 35 
5J8 NBP   CBQ   SING N N 36 
5J8 NBP   CBM   SING N N 37 
5J8 PAE   OAD   SING N N 38 
5J8 PAE   OAF   SING N N 39 
5J8 PAA   OAD   SING N N 40 
5J8 PAA   OBL   SING N N 41 
5J8 PAA   OAB   SING N N 42 
5J8 CBF   CBM   SING N N 43 
5J8 CBF   CBE   SING N N 44 
5J8 "C4'" "C5'" SING N N 45 
5J8 "C4'" "O4'" SING N N 46 
5J8 OBL   CBK   SING N N 47 
5J8 CBM   OBG   SING N N 48 
5J8 CBE   OBJ   SING N N 49 
5J8 CBE   CBH   SING N N 50 
5J8 OBG   CBH   SING N N 51 
5J8 CBK   CBH   SING N N 52 
5J8 C8    H1    SING N N 53 
5J8 NBU   H2    SING N N 54 
5J8 NBU   H3    SING N N 55 
5J8 CBQ   H5    SING N N 56 
5J8 CBS   H7    SING N N 57 
5J8 CBS   H8    SING N N 58 
5J8 CBN   H9    SING N N 59 
5J8 CBO   H10   SING N N 60 
5J8 CBM   H11   SING N N 61 
5J8 CBF   H12   SING N N 62 
5J8 OBI   H13   SING N N 63 
5J8 CBE   H14   SING N N 64 
5J8 OBJ   H15   SING N N 65 
5J8 CBH   H16   SING N N 66 
5J8 CBK   H17   SING N N 67 
5J8 CBK   H18   SING N N 68 
5J8 OAB   H19   SING N N 69 
5J8 OAF   H20   SING N N 70 
5J8 "C5'" H21   SING N N 71 
5J8 "C5'" H22   SING N N 72 
5J8 "C4'" H23   SING N N 73 
5J8 "C3'" H24   SING N N 74 
5J8 "O3'" H25   SING N N 75 
5J8 "C2'" H26   SING N N 76 
5J8 OP1   H27   SING N N 77 
5J8 OP2   H28   SING N N 78 
5J8 "C1'" H29   SING N N 79 
5J8 C2    H30   SING N N 80 
5J8 N6    H31   SING N N 81 
5J8 N6    H32   SING N N 82 
5J8 CBN   H4    SING N N 83 
5J8 CBO   H6    SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5J8 InChI            InChI                1.03  
;InChI=1S/C21H32N7O17P3/c22-17-12-19(25-7-24-17)28(8-26-12)21-16(44-46(33,34)35)14(30)11(43-21)6-41-48(38,39)45-47(36,37)40-5-10-13(29)15(31)20(42-10)27-3-1-2-9(4-27)18(23)32/h4,7-8,10-11,13-16,20-21,29-31H,1-3,5-6H2,(H2,23,32)(H,36,37)(H,38,39)(H2,22,24,25)(H2,33,34,35)/t10-,11-,13-,14-,15-,16-,20-,21-/m1/s1
;
5J8 InChIKey         InChI                1.03  XBYZUJOLVDCGQT-NNYOXOHSSA-N 
5J8 SMILES_CANONICAL CACTVS               3.385 "NC(=O)C1=CN(CCC1)[C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O[P](O)(O)=O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" 
5J8 SMILES           CACTVS               3.385 "NC(=O)C1=CN(CCC1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O[P](O)(O)=O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" 
5J8 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)N5CCCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N" 
5J8 SMILES           "OpenEye OEToolkits" 1.9.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)N5CCCC(=C5)C(=O)N)O)O)O)OP(=O)(O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5J8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
"[[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5J8 "Create component" 2015-09-30 RCSB 
5J8 "Initial release"  2016-10-05 RCSB 
# 
