data_5I8
# 
_chem_comp.id                                    5I8 
_chem_comp.name                                  "2-(4,6-dimethylpyrimidin-2-yl)-3H-isoindol-1-imine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H14 N4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-(4,6-Dimethylpyrimidin-2-yl)-2,3-dihydro-1H-isoindol-1-imine; 3466575" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-09 
_chem_comp.pdbx_modified_date                    2022-07-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        238.288 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5I8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7P42 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5I8 N   N1  N 0 1 Y N N -34.085 -15.829 -18.890 1.855  1.039  -0.000 N   5I8 1  
5I8 C   C1  C 0 1 N N N -33.048 -16.301 -14.801 3.962  -2.596 -0.000 C   5I8 2  
5I8 C1  C2  C 0 1 Y N N -33.444 -16.134 -16.235 3.214  -1.288 0.000  C1  5I8 3  
5I8 C10 C3  C 0 1 Y N N -29.013 -13.755 -22.596 -4.800 0.560  0.000  C10 5I8 4  
5I8 C11 C4  C 0 1 Y N N -30.352 -14.038 -22.370 -3.597 1.235  0.000  C11 5I8 5  
5I8 C12 C5  C 0 1 Y N N -30.764 -14.425 -21.096 -2.398 0.520  0.000  C12 5I8 6  
5I8 C13 C6  C 0 1 N N N -32.081 -14.791 -20.581 -0.986 0.955  0.000  C13 5I8 7  
5I8 C2  C7  C 0 1 Y N N -34.715 -16.445 -16.682 3.903  -0.085 0.000  C2  5I8 8  
5I8 C3  C8  C 0 1 Y N N -35.004 -16.282 -18.023 3.177  1.095  0.000  C3  5I8 9  
5I8 C4  C9  C 0 1 N N N -36.356 -16.596 -18.586 3.883  2.426  -0.000 C4  5I8 10 
5I8 C5  C10 C 0 1 Y N N -32.878 -15.551 -18.362 1.227  -0.127 -0.000 C5  5I8 11 
5I8 C6  C11 C 0 1 N N N -30.527 -14.960 -18.798 -1.001 -1.351 -0.000 C6  5I8 12 
5I8 C7  C12 C 0 1 Y N N -29.841 -14.526 -20.061 -2.432 -0.875 0.000  C7  5I8 13 
5I8 C8  C13 C 0 1 Y N N -28.502 -14.236 -20.300 -3.639 -1.539 -0.000 C8  5I8 14 
5I8 C9  C14 C 0 1 Y N N -28.094 -13.851 -21.566 -4.823 -0.823 -0.000 C9  5I8 15 
5I8 N1  N2  N 0 1 Y N N -32.497 -15.677 -17.074 1.891  -1.273 0.000  N1  5I8 16 
5I8 N2  N3  N 0 1 N N N -31.917 -15.110 -19.244 -0.160 -0.149 -0.000 N2  5I8 17 
5I8 N3  N4  N 0 1 N N N -33.183 -14.810 -21.216 -0.582 2.193  -0.000 N3  5I8 18 
5I8 H1  H1  H 0 1 N N N -31.996 -16.006 -14.674 4.143  -2.911 1.028  H1  5I8 19 
5I8 H2  H2  H 0 1 N N N -33.686 -15.666 -14.168 3.370  -3.353 -0.513 H2  5I8 20 
5I8 H3  H3  H 0 1 N N N -33.171 -17.354 -14.507 4.915  -2.469 -0.514 H3  5I8 21 
5I8 H4  H4  H 0 1 N N N -28.686 -13.458 -23.581 -5.727 1.114  0.004  H4  5I8 22 
5I8 H5  H5  H 0 1 N N N -31.069 -13.959 -23.174 -3.582 2.315  0.000  H5  5I8 23 
5I8 H6  H6  H 0 1 N N N -35.467 -16.808 -15.997 4.983  -0.068 0.000  H6  5I8 24 
5I8 H7  H7  H 0 1 N N N -36.361 -16.390 -19.667 4.054  2.747  1.027  H7  5I8 25 
5I8 H8  H8  H 0 1 N N N -36.587 -17.658 -18.414 4.840  2.329  -0.514 H8  5I8 26 
5I8 H9  H9  H 0 1 N N N -37.114 -15.971 -18.091 3.268  3.164  -0.515 H9  5I8 27 
5I8 H10 H10 H 0 1 N N N -30.120 -15.913 -18.429 -0.805 -1.944 0.893  H10 5I8 28 
5I8 H11 H11 H 0 1 N N N -30.439 -14.195 -18.012 -0.805 -1.945 -0.893 H11 5I8 29 
5I8 H12 H12 H 0 1 N N N -27.781 -14.311 -19.499 -3.660 -2.619 -0.001 H12 5I8 30 
5I8 H13 H13 H 0 1 N N N -27.054 -13.625 -21.750 -5.768 -1.346 -0.000 H13 5I8 31 
5I8 H14 H14 H 0 1 N N N -33.946 -15.088 -20.633 0.367  2.394  -0.001 H14 5I8 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5I8 C10 C11 DOUB Y N 1  
5I8 C10 C9  SING Y N 2  
5I8 C11 C12 SING Y N 3  
5I8 C9  C8  DOUB Y N 4  
5I8 N3  C13 DOUB N N 5  
5I8 C12 C13 SING N N 6  
5I8 C12 C7  DOUB Y N 7  
5I8 C13 N2  SING N N 8  
5I8 C8  C7  SING Y N 9  
5I8 C7  C6  SING N N 10 
5I8 N2  C6  SING N N 11 
5I8 N2  C5  SING N N 12 
5I8 N   C5  DOUB Y N 13 
5I8 N   C3  SING Y N 14 
5I8 C4  C3  SING N N 15 
5I8 C5  N1  SING Y N 16 
5I8 C3  C2  DOUB Y N 17 
5I8 N1  C1  DOUB Y N 18 
5I8 C2  C1  SING Y N 19 
5I8 C1  C   SING N N 20 
5I8 C   H1  SING N N 21 
5I8 C   H2  SING N N 22 
5I8 C   H3  SING N N 23 
5I8 C10 H4  SING N N 24 
5I8 C11 H5  SING N N 25 
5I8 C2  H6  SING N N 26 
5I8 C4  H7  SING N N 27 
5I8 C4  H8  SING N N 28 
5I8 C4  H9  SING N N 29 
5I8 C6  H10 SING N N 30 
5I8 C6  H11 SING N N 31 
5I8 C8  H12 SING N N 32 
5I8 C9  H13 SING N N 33 
5I8 N3  H14 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5I8 InChI            InChI                1.03  "InChI=1S/C14H14N4/c1-9-7-10(2)17-14(16-9)18-8-11-5-3-4-6-12(11)13(18)15/h3-7,15H,8H2,1-2H3" 
5I8 InChIKey         InChI                1.03  CNIPEVQUYISKFW-UHFFFAOYSA-N                                                                  
5I8 SMILES_CANONICAL CACTVS               3.385 "Cc1cc(C)nc(n1)N2Cc3ccccc3C2=N"                                                              
5I8 SMILES           CACTVS               3.385 "Cc1cc(C)nc(n1)N2Cc3ccccc3C2=N"                                                              
5I8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2Cc3ccccc3C2=N)C"                                                              
5I8 SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2Cc3ccccc3C2=N)C"                                                              
# 
_pdbx_chem_comp_identifier.comp_id           5I8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-(4,6-dimethylpyrimidin-2-yl)-3~{H}-isoindol-1-imine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5I8 "Create component" 2021-07-09 PDBE 
5I8 "Initial release"  2022-07-20 RCSB 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 5I8 "2-(4,6-Dimethylpyrimidin-2-yl)-2,3-dihydro-1H-isoindol-1-imine" PUBCHEM ? 
2 5I8 3466575                                                          PUBCHEM ? 
# 
