data_5A8
# 
_chem_comp.id                                    5A8 
_chem_comp.name                                  "5'-azido-5'-deoxy-8-[(2-{[2-(1H-indol-3-yl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H24 N10 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-08-31 
_chem_comp.pdbx_modified_date                    2016-09-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        524.556 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5A8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5DHU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5A8 C2  C1  C 0  1 Y N N 13.950 -19.265 -45.576 6.335   3.246  -0.164 C2  5A8 1  
5A8 C4  C2  C 0  1 Y N N 11.781 -18.789 -45.276 4.553   1.796  -0.091 C4  5A8 2  
5A8 C5  C3  C 0  1 Y N N 11.732 -18.270 -46.520 3.681   2.873  -0.317 C5  5A8 3  
5A8 C6  C4  C 0  1 Y N N 12.867 -18.253 -47.279 4.235   4.154  -0.473 C6  5A8 4  
5A8 N9  N1  N 0  1 Y N N 10.612 -18.683 -44.751 3.760   0.676  0.012  N9  5A8 5  
5A8 CBF C5  C 0  1 Y N N 10.026 -20.807 -48.073 -7.284  0.528  0.361  CBF 5A8 6  
5A8 CBK C6  C 0  1 Y N N 11.343 -21.047 -48.325 -7.129  0.725  1.735  CBK 5A8 7  
5A8 CBJ C7  C 0  1 Y N N 12.085 -21.764 -47.422 -8.094  0.285  2.596  CBJ 5A8 8  
5A8 CBI C8  C 0  1 Y N N 11.508 -22.234 -46.274 -9.229  -0.355 2.117  CBI 5A8 9  
5A8 CBH C9  C 0  1 Y N N 10.188 -21.996 -46.036 -9.402  -0.560 0.766  CBH 5A8 10 
5A8 CBG C10 C 0  1 Y N N 9.465  -21.286 -46.938 -8.432  -0.121 -0.130 CBG 5A8 11 
5A8 NBD N2  N 0  1 Y N N 8.226  -20.926 -46.929 -8.314  -0.174 -1.500 NBD 5A8 12 
5A8 CBE C11 C 0  1 Y N N 7.971  -20.250 -48.015 -7.141  0.414  -1.889 CBE 5A8 13 
5A8 CBC C12 C 0  1 Y N N 9.040  -20.159 -48.745 -6.470  0.854  -0.812 CBC 5A8 14 
5A8 CBA C13 C 0  1 N N N 9.096  -19.418 -50.057 -5.138  1.557  -0.812 CBA 5A8 15 
5A8 CAZ C14 C 0  1 N N N 8.244  -18.155 -50.019 -4.023  0.537  -0.575 CAZ 5A8 16 
5A8 NAY N3  N 0  1 N N N 8.436  -17.515 -48.735 -2.727  1.220  -0.574 NAY 5A8 17 
5A8 CAX C15 C 0  1 N N N 7.466  -17.116 -47.987 -1.594  0.517  -0.383 CAX 5A8 18 
5A8 OBB O1  O 0  1 N N N 6.312  -17.188 -48.323 -1.646  -0.683 -0.210 OBB 5A8 19 
5A8 CAW C16 C 0  1 N N N 7.890  -16.526 -46.649 -0.261  1.220  -0.382 CAW 5A8 20 
5A8 SAA S1  S 0  1 N N N 8.241  -17.780 -45.373 1.058   0.013  -0.102 SAA 5A8 21 
5A8 C8  C17 C 0  1 Y N N 9.853  -18.108 -45.623 2.462   1.077  -0.149 C8  5A8 22 
5A8 N7  N4  N 0  1 Y N N 10.518 -17.853 -46.704 2.420   2.373  -0.342 N7  5A8 23 
5A8 N6  N5  N 0  1 N N N 12.903 -17.768 -48.474 3.424   5.254  -0.703 N6  5A8 24 
5A8 N1  N6  N 0  1 Y N N 13.946 -18.760 -46.774 5.554   4.288  -0.384 N1  5A8 25 
5A8 N3  N7  N 0  1 Y N N 12.897 -19.285 -44.828 5.860   2.026  -0.023 N3  5A8 26 
5A8 CAL C18 C 0  1 N N R 10.230 -19.145 -43.445 4.222   -0.695 0.248  CAL 5A8 27 
5A8 OAM O2  O 0  1 N N N 9.094  -19.899 -43.698 3.454   -1.632 -0.538 OAM 5A8 28 
5A8 CAP C19 C 0  1 N N R 9.763  -18.063 -42.490 3.931   -1.124 1.709  CAP 5A8 29 
5A8 OAQ O3  O 0  1 N N N 10.590 -18.117 -41.387 4.991   -0.722 2.579  OAQ 5A8 30 
5A8 CAO C20 C 0  1 N N S 8.400  -18.532 -42.049 3.870   -2.666 1.587  CAO 5A8 31 
5A8 OAR O4  O 0  1 N N N 8.263  -18.418 -40.650 5.120   -3.247 1.965  OAR 5A8 32 
5A8 CAN C21 C 0  1 N N R 8.430  -19.984 -42.481 3.588   -2.917 0.093  CAN 5A8 33 
5A8 CAS C22 C 0  1 N N N 7.008  -20.453 -42.744 2.291   -3.712 -0.065 CAS 5A8 34 
5A8 NAT N8  N 0  1 N N N 6.954  -21.915 -42.722 2.085   -4.033 -1.480 NAT 5A8 35 
5A8 NAU N9  N 1  1 N N N 6.907  -22.560 -43.830 2.020   -5.106 -1.809 NAU 5A8 36 
5A8 NAV N10 N -1 1 N N N 6.860  -23.207 -44.936 1.956   -6.179 -2.138 NAV 5A8 37 
5A8 H1  H1  H 0  1 N N N 14.868 -19.684 -45.192 7.402   3.399  -0.104 H1  5A8 38 
5A8 H2  H2  H 0  1 N N N 11.800 -20.675 -49.230 -6.249  1.222  2.115  H2  5A8 39 
5A8 H3  H3  H 0  1 N N N 13.129 -21.959 -47.618 -7.974  0.438  3.659  H3  5A8 40 
5A8 H4  H4  H 0  1 N N N 12.096 -22.791 -45.560 -9.983  -0.697 2.810  H4  5A8 41 
5A8 H5  H5  H 0  1 N N N 9.721  -22.369 -45.137 -10.288 -1.060 0.403  H5  5A8 42 
5A8 H6  H6  H 0  1 N N N 7.567  -21.132 -46.206 -8.965  -0.569 -2.101 H6  5A8 43 
5A8 H7  H7  H 0  1 N N N 7.010  -19.828 -48.270 -6.803  0.508  -2.911 H7  5A8 44 
5A8 H8  H8  H 0  1 N N N 8.725  -20.076 -50.856 -4.984  2.046  -1.774 H8  5A8 45 
5A8 H9  H9  H 0  1 N N N 10.139 -19.140 -50.267 -5.121  2.304  -0.018 H9  5A8 46 
5A8 H10 H10 H 0  1 N N N 8.554  -17.473 -50.824 -4.176  0.048  0.387  H10 5A8 47 
5A8 H11 H11 H 0  1 N N N 7.184  -18.418 -50.149 -4.039  -0.210 -1.369 H11 5A8 48 
5A8 H12 H12 H 0  1 N N N 9.372  -17.375 -48.411 -2.685  2.180  -0.712 H12 5A8 49 
5A8 H13 H13 H 0  1 N N N 8.799  -15.927 -46.806 -0.108  1.709  -1.344 H13 5A8 50 
5A8 H14 H14 H 0  1 N N N 7.081  -15.876 -46.284 -0.245  1.967  0.412  H14 5A8 51 
5A8 H15 H15 H 0  1 N N N 13.825 -17.868 -48.847 3.819   6.135  -0.801 H15 5A8 52 
5A8 H16 H16 H 0  1 N N N 12.254 -18.261 -49.053 2.463   5.143  -0.766 H16 5A8 53 
5A8 H17 H17 H 0  1 N N N 11.029 -19.741 -42.981 5.285   -0.784 0.026  H17 5A8 54 
5A8 H18 H18 H 0  1 N N N 9.723  -17.077 -42.976 2.976   -0.723 2.049  H18 5A8 55 
5A8 H19 H19 H 0  1 N N N 10.329 -17.451 -40.762 4.854   -0.969 3.504  H19 5A8 56 
5A8 H20 H20 H 0  1 N N N 7.611  -17.987 -42.587 3.063   -3.066 2.202  H20 5A8 57 
5A8 H21 H21 H 0  1 N N N 7.400  -18.717 -40.390 5.138   -4.212 1.908  H21 5A8 58 
5A8 H22 H22 H 0  1 N N N 8.937  -20.620 -41.740 4.418   -3.464 -0.354 H22 5A8 59 
5A8 H23 H23 H 0  1 N N N 6.681  -20.091 -43.730 2.357   -4.635 0.511  H23 5A8 60 
5A8 H24 H24 H 0  1 N N N 6.342  -20.052 -41.966 1.453   -3.116 0.298  H24 5A8 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5A8 CBA CAZ SING N N 1  
5A8 CBA CBC SING N N 2  
5A8 CAZ NAY SING N N 3  
5A8 CBC CBF SING Y N 4  
5A8 CBC CBE DOUB Y N 5  
5A8 NAY CAX SING N N 6  
5A8 N6  C6  SING N N 7  
5A8 CBK CBF DOUB Y N 8  
5A8 CBK CBJ SING Y N 9  
5A8 OBB CAX DOUB N N 10 
5A8 CBF CBG SING Y N 11 
5A8 CBE NBD SING Y N 12 
5A8 CAX CAW SING N N 13 
5A8 CBJ CBI DOUB Y N 14 
5A8 C6  N1  DOUB Y N 15 
5A8 C6  C5  SING Y N 16 
5A8 CBG NBD SING Y N 17 
5A8 CBG CBH DOUB Y N 18 
5A8 N1  C2  SING Y N 19 
5A8 N7  C5  SING Y N 20 
5A8 N7  C8  DOUB Y N 21 
5A8 CAW SAA SING N N 22 
5A8 C5  C4  DOUB Y N 23 
5A8 CBI CBH SING Y N 24 
5A8 C8  SAA SING N N 25 
5A8 C8  N9  SING Y N 26 
5A8 C2  N3  DOUB Y N 27 
5A8 C4  N3  SING Y N 28 
5A8 C4  N9  SING Y N 29 
5A8 NAV NAU DOUB N N 30 
5A8 N9  CAL SING N N 31 
5A8 NAU NAT DOUB N N 32 
5A8 OAM CAL SING N N 33 
5A8 OAM CAN SING N N 34 
5A8 CAL CAP SING N N 35 
5A8 CAS NAT SING N N 36 
5A8 CAS CAN SING N N 37 
5A8 CAP CAO SING N N 38 
5A8 CAP OAQ SING N N 39 
5A8 CAN CAO SING N N 40 
5A8 CAO OAR SING N N 41 
5A8 C2  H1  SING N N 42 
5A8 CBK H2  SING N N 43 
5A8 CBJ H3  SING N N 44 
5A8 CBI H4  SING N N 45 
5A8 CBH H5  SING N N 46 
5A8 NBD H6  SING N N 47 
5A8 CBE H7  SING N N 48 
5A8 CBA H8  SING N N 49 
5A8 CBA H9  SING N N 50 
5A8 CAZ H10 SING N N 51 
5A8 CAZ H11 SING N N 52 
5A8 NAY H12 SING N N 53 
5A8 CAW H13 SING N N 54 
5A8 CAW H14 SING N N 55 
5A8 N6  H15 SING N N 56 
5A8 N6  H16 SING N N 57 
5A8 CAL H17 SING N N 58 
5A8 CAP H18 SING N N 59 
5A8 OAQ H19 SING N N 60 
5A8 CAO H20 SING N N 61 
5A8 OAR H21 SING N N 62 
5A8 CAN H22 SING N N 63 
5A8 CAS H23 SING N N 64 
5A8 CAS H24 SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5A8 SMILES           ACDLabs              12.01 "c5nc4n(C1C(C(O)C(O1)CN=[N+]=[N-])O)c(SCC(NCCc3c2c(cccc2)nc3)=O)nc4c(n5)N" 
5A8 InChI            InChI                1.03  
"InChI=1S/C22H24N10O4S/c23-19-16-20(28-10-27-19)32(21-18(35)17(34)14(36-21)8-29-31-24)22(30-16)37-9-15(33)25-6-5-11-7-26-13-4-2-1-3-12(11)13/h1-4,7,10,14,17-18,21,26,34-35H,5-6,8-9H2,(H,25,33)(H2,23,27,28)/t14-,17-,18-,21-/m1/s1" 
5A8 InChIKey         InChI                1.03  NZVSVIHQZMZCNV-HAXDFEGKSA-N 
5A8 SMILES_CANONICAL CACTVS               3.385 "Nc1ncnc2n([C@@H]3O[C@H](CN=[N+]=[N-])[C@@H](O)[C@H]3O)c(SCC(=O)NCCc4c[nH]c5ccccc45)nc12" 
5A8 SMILES           CACTVS               3.385 "Nc1ncnc2n([CH]3O[CH](CN=[N+]=[N-])[CH](O)[CH]3O)c(SCC(=O)NCCc4c[nH]c5ccccc45)nc12" 
5A8 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)c(c[nH]2)CCNC(=O)CSc3nc4c(ncnc4n3[C@H]5[C@@H]([C@@H]([C@H](O5)CN=[N+]=[N-])O)O)N" 
5A8 SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc2c(c1)c(c[nH]2)CCNC(=O)CSc3nc4c(ncnc4n3C5C(C(C(O5)CN=[N+]=[N-])O)O)N" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5A8 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-azido-5'-deoxy-8-[(2-{[2-(1H-indol-3-yl)ethyl]amino}-2-oxoethyl)sulfanyl]adenosine"                                              
5A8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "2-[6-azanyl-9-[(2R,3R,4S,5R)-5-(azidomethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]sulfanyl-N-[2-(1H-indol-3-yl)ethyl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5A8 "Create component" 2015-08-31 EBI  
5A8 "Initial release"  2016-09-14 RCSB 
# 
