data_4W8
# 
_chem_comp.id                                    4W8 
_chem_comp.name                                  "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-(4-methoxy-1H-indole-2-carbonyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C32 H35 N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-07-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        601.716 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4W8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7RFR 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4W8 C41 C1  C 0 1 Y N N N N N -15.159 17.275 -0.255 7.667  4.028  0.760  C41 4W8 1  
4W8 C42 C2  C 0 1 Y N N N N N -14.960 16.523 -1.407 8.424  3.035  1.365  C42 4W8 2  
4W8 C5  C3  C 0 1 Y N N N N N -22.726 7.985  6.152  -7.532 3.239  0.510  C5  4W8 3  
4W8 C40 C4  C 0 1 Y N N N N N -14.687 16.830 0.971  6.527  3.719  0.081  C40 4W8 4  
4W8 C6  C5  C 0 1 Y N N N N N -21.338 7.920  6.106  -6.285 3.066  -0.050 C6  4W8 5  
4W8 C4  C6  C 0 1 Y N N N N N -23.439 8.739  5.225  -8.099 2.247  1.296  C4  4W8 6  
4W8 C43 C7  C 0 1 Y N N N N N -14.241 15.340 -1.362 8.027  1.719  1.285  C43 4W8 7  
4W8 C10 C8  C 0 1 Y N N N N N -20.366 10.020 3.335  -5.224 -0.195 1.001  C10 4W8 8  
4W8 C11 C9  C 0 1 Y N N N N N -21.364 9.408  4.168  -6.152 0.871  0.959  C11 4W8 9  
4W8 C39 C10 C 0 1 Y N N N N N -13.994 15.622 1.039  6.099  2.380  -0.023 C39 4W8 10 
4W8 C7  C11 C 0 1 Y N N N N N -20.671 8.643  5.121  -5.581 1.885  0.166  C7  4W8 11 
4W8 C3  C12 C 0 1 Y N N N N N -22.768 9.462  4.241  -7.423 1.066  1.527  C3  4W8 12 
4W8 C44 C13 C 0 1 Y N N N N N -13.783 14.884 -0.131 6.864  1.385  0.595  C44 4W8 13 
4W8 C9  C14 C 0 1 Y N N N N N -19.136 9.607  3.794  -4.145 0.166  0.257  C9  4W8 14 
4W8 C37 C15 C 0 1 Y N N N N N -12.913 13.905 1.937  4.844  0.602  -0.591 C37 4W8 15 
4W8 C33 C16 C 0 1 N N N N N N -13.153 10.220 7.165  1.203  -2.606 1.534  C33 4W8 16 
4W8 C12 C17 C 0 1 N N N N N N -17.729 9.868  3.387  -2.948 -0.657 0.037  C12 4W8 17 
4W8 C35 C18 C 0 1 N N S N N N -12.239 13.053 2.965  3.686  -0.121 -1.230 C35 4W8 18 
4W8 C22 C19 C 0 1 N N N N N N -15.374 11.726 2.855  0.356  -0.447 -0.838 C22 4W8 19 
4W8 C30 C20 C 0 1 N N N N N N -14.577 12.123 6.752  3.127  -2.789 2.980  C30 4W8 20 
4W8 C31 C21 C 0 1 N N N N N N -14.719 11.638 8.183  2.603  -4.170 2.529  C31 4W8 21 
4W8 C15 C22 C 0 1 N N N N N N -18.425 11.232 1.358  -2.147 0.811  -1.878 C15 4W8 22 
4W8 C28 C23 C 0 1 N N S N N N -13.744 11.038 6.032  2.434  -1.844 1.972  C28 4W8 23 
4W8 C20 C24 C 0 1 N N S N N N -16.086 10.793 1.879  -0.888 -1.099 -1.385 C20 4W8 24 
4W8 C16 C25 C 0 1 N N S N N N -17.617 11.570 0.109  -1.734 0.240  -3.252 C16 4W8 25 
4W8 C18 C26 C 0 1 N N R N N N -16.154 11.387 0.456  -0.903 -1.019 -2.927 C18 4W8 26 
4W8 C46 C27 C 0 1 N N N N N N -16.781 10.570 -0.655 -2.250 -1.146 -3.642 C46 4W8 27 
4W8 C47 C28 C 0 1 N N N N N N -16.464 10.934 -2.105 -2.227 -1.515 -5.127 C47 4W8 28 
4W8 C48 C29 C 0 1 N N N N N N -16.980 9.068  -0.444 -3.423 -1.713 -2.840 C48 4W8 29 
4W8 C1  C30 C 0 1 N N N N N N -24.790 10.390 3.333  -9.278 0.366  2.837  C1  4W8 30 
4W8 C27 C31 C 0 1 N N N N N N -12.677 11.572 5.054  3.349  -1.572 0.776  C27 4W8 31 
4W8 C25 C32 C 0 1 N N S N N N -13.252 12.329 3.850  2.691  -0.545 -0.148 C25 4W8 32 
4W8 N38 N1  N 0 1 Y N N N N N -13.477 15.049 2.199  5.016  1.869  -0.640 N38 4W8 33 
4W8 N8  N2  N 0 1 Y N N N N N -19.313 8.785  4.892  -4.352 1.434  -0.255 N8  4W8 34 
4W8 N32 N3  N 0 1 N N N N N N -13.614 10.698 8.325  1.322  -3.904 1.863  N32 4W8 35 
4W8 N14 N4  N 0 1 N N N N N N -17.479 10.597 2.281  -2.093 -0.350 -0.960 N14 4W8 36 
4W8 N24 N5  N 0 1 N N N N N N -14.082 11.464 3.038  1.510  -1.141 -0.777 N24 4W8 37 
4W8 O34 O1  O 0 1 N N N N N N -12.438 9.237  7.031  0.246  -2.116 0.973  O34 4W8 38 
4W8 O13 O2  O 0 1 N N N N N N -16.817 9.407  4.086  -2.727 -1.615 0.754  O13 4W8 39 
4W8 O36 O3  O 0 1 N N N N N N -11.131 13.611 3.663  4.166  -1.278 -1.916 O36 4W8 40 
4W8 O23 O4  O 0 1 N N N N N N -15.975 12.616 3.451  0.319  0.702  -0.452 O23 4W8 41 
4W8 O2  O5  O 0 1 N N N N N N -23.368 10.235 3.281  -7.984 0.096  2.294  O2  4W8 42 
4W8 S45 S1  S 0 1 Y N N N N N -12.903 13.430 0.245  6.080  -0.165 0.301  S45 4W8 43 
4W8 H1  H1  H 0 1 N N N N N N -15.687 18.215 -0.315 7.983  5.058  0.831  H1  4W8 44 
4W8 H2  H2  H 0 1 N N N N N N -15.370 16.864 -2.346 9.326  3.294  1.899  H2  4W8 45 
4W8 H3  H3  H 0 1 N N N N N N -23.259 7.442  6.919  -8.071 4.159  0.338  H3  4W8 46 
4W8 H4  H4  H 0 1 N N N N N N -14.855 17.413 1.864  5.948  4.505  -0.380 H4  4W8 47 
4W8 H5  H5  H 0 1 N N N N N N -20.789 7.322  6.819  -5.853 3.848  -0.658 H5  4W8 48 
4W8 H6  H6  H 0 1 N N N N N N -24.518 8.764  5.268  -9.076 2.400  1.731  H6  4W8 49 
4W8 H7  H7  H 0 1 N N N N N N -14.040 14.783 -2.265 8.617  0.947  1.756  H7  4W8 50 
4W8 H8  H8  H 0 1 N N N N N N -20.548 10.683 2.502  -5.351 -1.130 1.526  H8  4W8 51 
4W8 H9  H9  H 0 1 N N N N N N -11.799 12.238 2.372  3.190  0.542  -1.939 H9  4W8 52 
4W8 H10 H10 H 0 1 N N N N N N -14.055 13.091 6.724  2.815  -2.567 4.000  H10 4W8 53 
4W8 H11 H11 H 0 1 N N N N N N -15.565 12.225 6.280  4.212  -2.734 2.885  H11 4W8 54 
4W8 H12 H12 H 0 1 N N N N N N -14.622 12.472 8.894  3.302  -4.630 1.831  H12 4W8 55 
4W8 H13 H13 H 0 1 N N N N N N -15.686 11.137 8.336  2.451  -4.817 3.393  H13 4W8 56 
4W8 H14 H14 H 0 1 N N N N N N -18.842 12.147 1.805  -1.444 1.580  -1.559 H14 4W8 57 
4W8 H15 H15 H 0 1 N N N N N N -19.243 10.539 1.110  -3.158 1.215  -1.921 H15 4W8 58 
4W8 H16 H16 H 0 1 N N N N N N -14.436 10.397 5.466  2.152  -0.909 2.457  H16 4W8 59 
4W8 H17 H17 H 0 1 N N N N N N -15.559 9.828  1.844  -0.948 -2.136 -1.056 H17 4W8 60 
4W8 H18 H18 H 0 1 N N N N N N -17.890 12.496 -0.418 -1.426 0.949  -4.021 H18 4W8 61 
4W8 H19 H19 H 0 1 N N N N N N -15.443 12.184 0.191  0.023  -1.248 -3.454 H19 4W8 62 
4W8 H20 H20 H 0 1 N N N N N N -16.333 12.023 -2.190 -3.248 -1.574 -5.502 H20 4W8 63 
4W8 H21 H21 H 0 1 N N N N N N -15.538 10.428 -2.416 -1.679 -0.753 -5.682 H21 4W8 64 
4W8 H22 H22 H 0 1 N N N N N N -17.293 10.613 -2.753 -1.736 -2.480 -5.254 H22 4W8 65 
4W8 H23 H23 H 0 1 N N N N N N -17.204 8.872  0.615  -4.309 -1.757 -3.474 H23 4W8 66 
4W8 H24 H24 H 0 1 N N N N N N -17.817 8.718  -1.066 -3.175 -2.716 -2.493 H24 4W8 67 
4W8 H25 H25 H 0 1 N N N N N N -16.062 8.533  -0.729 -3.622 -1.070 -1.983 H25 4W8 68 
4W8 H26 H26 H 0 1 N N N N N N -25.120 11.033 2.503  -9.984 0.542  2.025  H26 4W8 69 
4W8 H27 H27 H 0 1 N N N N N N -25.270 9.404  3.246  -9.610 -0.488 3.428  H27 4W8 70 
4W8 H28 H28 H 0 1 N N N N N N -25.074 10.853 4.290  -9.228 1.250  3.473  H28 4W8 71 
4W8 H29 H29 H 0 1 N N N N N N -12.094 10.718 4.679  4.304  -1.183 1.130  H29 4W8 72 
4W8 H30 H30 H 0 1 N N N N N N -12.013 12.254 5.606  3.516  -2.500 0.228  H30 4W8 73 
4W8 H31 H31 H 0 1 N N N N N N -13.908 13.109 4.265  2.392  0.327  0.433  H31 4W8 74 
4W8 H32 H32 H 0 1 N N N N N N -18.583 8.364  5.430  -3.732 1.924  -0.817 H32 4W8 75 
4W8 H33 H33 H 0 1 N N N N N N -13.234 10.434 9.212  0.648  -4.578 1.684  H33 4W8 76 
4W8 H34 H34 H 0 1 N N N N N N -13.678 10.657 2.608  1.558  -2.035 -1.150 H34 4W8 77 
4W8 H35 H35 H 0 1 N N N N N N -10.794 12.975 4.283  4.620  -1.914 -1.345 H35 4W8 78 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4W8 C47 C46 SING N N 1  
4W8 C42 C43 DOUB Y N 2  
4W8 C42 C41 SING Y N 3  
4W8 C43 C44 SING Y N 4  
4W8 C46 C48 SING N N 5  
4W8 C46 C16 SING N N 6  
4W8 C46 C18 SING N N 7  
4W8 C41 C40 DOUB Y N 8  
4W8 C44 S45 SING Y N 9  
4W8 C44 C39 DOUB Y N 10 
4W8 C16 C18 SING N N 11 
4W8 C16 C15 SING N N 12 
4W8 S45 C37 SING Y N 13 
4W8 C18 C20 SING N N 14 
4W8 C40 C39 SING Y N 15 
4W8 C39 N38 SING Y N 16 
4W8 C15 N14 SING N N 17 
4W8 C20 N14 SING N N 18 
4W8 C20 C22 SING N N 19 
4W8 C37 N38 DOUB Y N 20 
4W8 C37 C35 SING N N 21 
4W8 N14 C12 SING N N 22 
4W8 C22 N24 SING N N 23 
4W8 C22 O23 DOUB N N 24 
4W8 C35 O36 SING N N 25 
4W8 C35 C25 SING N N 26 
4W8 N24 C25 SING N N 27 
4W8 O2  C1  SING N N 28 
4W8 O2  C3  SING N N 29 
4W8 C10 C9  DOUB Y N 30 
4W8 C10 C11 SING Y N 31 
4W8 C12 C9  SING N N 32 
4W8 C12 O13 DOUB N N 33 
4W8 C9  N8  SING Y N 34 
4W8 C25 C27 SING N N 35 
4W8 C11 C3  DOUB Y N 36 
4W8 C11 C7  SING Y N 37 
4W8 C3  C4  SING Y N 38 
4W8 N8  C7  SING Y N 39 
4W8 C27 C28 SING N N 40 
4W8 C7  C6  DOUB Y N 41 
4W8 C4  C5  DOUB Y N 42 
4W8 C28 C30 SING N N 43 
4W8 C28 C33 SING N N 44 
4W8 C6  C5  SING Y N 45 
4W8 C30 C31 SING N N 46 
4W8 O34 C33 DOUB N N 47 
4W8 C33 N32 SING N N 48 
4W8 C31 N32 SING N N 49 
4W8 C41 H1  SING N N 50 
4W8 C42 H2  SING N N 51 
4W8 C5  H3  SING N N 52 
4W8 C40 H4  SING N N 53 
4W8 C6  H5  SING N N 54 
4W8 C4  H6  SING N N 55 
4W8 C43 H7  SING N N 56 
4W8 C10 H8  SING N N 57 
4W8 C35 H9  SING N N 58 
4W8 C30 H10 SING N N 59 
4W8 C30 H11 SING N N 60 
4W8 C31 H12 SING N N 61 
4W8 C31 H13 SING N N 62 
4W8 C15 H14 SING N N 63 
4W8 C15 H15 SING N N 64 
4W8 C28 H16 SING N N 65 
4W8 C20 H17 SING N N 66 
4W8 C16 H18 SING N N 67 
4W8 C18 H19 SING N N 68 
4W8 C47 H20 SING N N 69 
4W8 C47 H21 SING N N 70 
4W8 C47 H22 SING N N 71 
4W8 C48 H23 SING N N 72 
4W8 C48 H24 SING N N 73 
4W8 C48 H25 SING N N 74 
4W8 C1  H26 SING N N 75 
4W8 C1  H27 SING N N 76 
4W8 C1  H28 SING N N 77 
4W8 C27 H29 SING N N 78 
4W8 C27 H30 SING N N 79 
4W8 C25 H31 SING N N 80 
4W8 N8  H32 SING N N 81 
4W8 N32 H33 SING N N 82 
4W8 N24 H34 SING N N 83 
4W8 O36 H35 SING N N 84 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4W8 SMILES           ACDLabs              12.01 "COc1cccc2[NH]c(cc12)C(=O)N1CC2C(C1C(=O)NC(CC1CCNC1=O)C(O)c1nc3ccccc3s1)C2(C)C"                                                                                                                                                                                        
4W8 InChI            InChI                1.03  "InChI=1S/C32H35N5O5S/c1-32(2)18-15-37(31(41)22-14-17-19(34-22)8-6-9-23(17)42-3)26(25(18)32)29(40)35-21(13-16-11-12-33-28(16)39)27(38)30-36-20-7-4-5-10-24(20)43-30/h4-10,14,16,18,21,25-27,34,38H,11-13,15H2,1-3H3,(H,33,39)(H,35,40)/t16-,18-,21-,25-,26-,27-/m0/s1" 
4W8 InChIKey         InChI                1.03  CVWZBMVWUPHSSU-AJEOIHGXSA-N                                                                                                                                                                                                                                            
4W8 SMILES_CANONICAL CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N3C[C@H]4[C@@H]([C@H]3C(=O)N[C@@H](C[C@@H]5CCNC5=O)[C@H](O)c6sc7ccccc7n6)C4(C)C"                                                                                                                                                             
4W8 SMILES           CACTVS               3.385 "COc1cccc2[nH]c(cc12)C(=O)N3C[CH]4[CH]([CH]3C(=O)N[CH](C[CH]5CCNC5=O)[CH](O)c6sc7ccccc7n6)C4(C)C"                                                                                                                                                                      
4W8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)c3cc4c([nH]3)cccc4OC)C(=O)N[C@@H](C[C@@H]5CCNC5=O)[C@@H](c6nc7ccccc7s6)O)C"                                                                                                                                                          
4W8 SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)c3cc4c([nH]3)cccc4OC)C(=O)NC(CC5CCNC5=O)C(c6nc7ccccc7s6)O)C"                                                                                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4W8 "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-N-{(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-3-(4-methoxy-1H-indole-2-carbonyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                       
4W8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-~{N}-[(1~{S},2~{S})-1-(1,3-benzothiazol-2-yl)-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-[(4-methoxy-1~{H}-indol-2-yl)carbonyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4W8 "Create component" 2021-07-15 RCSB 
4W8 "Initial release"  2021-11-10 RCSB 
4W8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            4W8 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C35 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
