data_4T8
# 
_chem_comp.id                                    4T8 
_chem_comp.name                                  "5'-({[(2R,3R)-3-amino-2-({2-[(N-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-beta-alanyl)amino]ethyl}sulfanyl)-4-hydroxybutyl]sulfonyl}amino)-5'-deoxyadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H44 N9 O12 P S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-05-21 
_chem_comp.pdbx_modified_date                    2015-12-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        757.774 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     4T8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZXJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
4T8 O3    O1  O 0 1 N N N 47.419 122.257 69.747 -13.598 1.586  1.058  O3    4T8 1  
4T8 C4    C1  C 0 1 Y N N 62.684 126.894 74.347 6.058   4.774  -0.042 C4    4T8 2  
4T8 C6    C2  C 0 1 Y N N 63.501 128.810 73.195 5.306   6.834  0.961  C6    4T8 3  
4T8 C8    C3  C 0 1 Y N N 61.339 127.738 75.812 4.997   3.298  1.206  C8    4T8 4  
4T8 O1    O2  O 0 1 N N N 62.567 124.190 79.214 8.968   0.025  -1.005 O1    4T8 5  
4T8 C     C4  C 0 1 N N R 57.205 128.948 79.129 3.075   -4.740 0.972  C     4T8 6  
4T8 N     N1  N 0 1 N N N 58.485 125.573 78.762 4.771   -1.627 -1.079 N     4T8 7  
4T8 S     S1  S 0 1 N N N 57.573 126.234 79.860 4.171   -3.168 -0.980 S     4T8 8  
4T8 C1    C5  C 0 1 N N N 57.899 127.850 79.956 3.654   -3.342 0.751  C1    4T8 9  
4T8 N1    N2  N 0 1 Y N N 64.244 127.989 72.438 6.053   7.475  0.068  N1    4T8 10 
4T8 C2    C6  C 0 1 Y N N 64.220 126.666 72.613 6.764   6.815  -0.828 C2    4T8 11 
4T8 N2    N3  N 0 1 N N N 58.178 131.028 80.009 3.793   -4.659 3.312  N2    4T8 12 
4T8 O2    O3  O 0 1 N N N 62.547 123.246 76.611 8.890   2.555  -0.728 O2    4T8 13 
4T8 C3    C7  C 0 1 N N N 59.886 126.007 78.865 5.975   -1.261 -0.329 C3    4T8 14 
4T8 N3    N4  N 0 1 Y N N 63.443 126.110 73.543 6.777   5.501  -0.891 N3    4T8 15 
4T8 C5    C8  C 0 1 Y N N 62.692 128.264 74.187 5.286   5.429  0.933  C5    4T8 16 
4T8 N6    N5  N 0 1 N N N 63.562 130.143 72.955 4.566   7.534  1.898  N6    4T8 17 
4T8 N7    N6  N 0 1 Y N N 61.839 128.772 75.101 4.664   4.471  1.660  N7    4T8 18 
4T8 N9    N7  N 0 1 Y N N 61.866 126.601 75.351 5.856   3.432  0.155  N9    4T8 19 
4T8 CA    C9  C 0 1 N N R 58.323 129.973 78.998 2.639   -4.887 2.431  CA    4T8 20 
4T8 CB    C10 C 0 1 N N N 58.420 130.594 77.617 2.093   -6.298 2.661  CB    4T8 21 
4T8 "C1'" C11 C 0 1 N N R 61.579 125.225 75.832 6.457   2.342  -0.617 "C1'" 4T8 22 
4T8 S1P   S2  S 0 1 N N N 56.594 128.523 77.519 1.642   -4.980 -0.114 S1P   4T8 23 
4T8 "C2'" C12 C 0 1 N N R 62.640 124.662 76.757 7.819   1.940  -0.009 "C2'" 4T8 24 
4T8 P2A   P1  P 0 1 N N N 46.646 123.800 69.111 -12.324 2.558  0.899  P2A   4T8 25 
4T8 C2P   C13 C 0 1 N N N 55.215 129.516 77.033 0.534   -3.628 0.368  C2P   4T8 26 
4T8 O2P   O4  O 0 1 N N N 56.237 125.950 79.528 3.040   -3.159 -1.839 O2P   4T8 27 
4T8 "C3'" C14 C 0 1 N N S 62.179 125.073 78.145 7.866   0.405  -0.177 "C3'" 4T8 28 
4T8 C3P   C15 C 0 1 N N N 53.882 128.840 77.312 -0.699  -3.631 -0.538 C3P   4T8 29 
4T8 O3P   O5  O 0 1 N N N 57.935 125.604 81.073 5.291   -3.998 -1.251 O3P   4T8 30 
4T8 "C4'" C16 C 0 1 N N R 60.666 125.030 77.983 6.528   0.061  -0.867 "C4'" 4T8 31 
4T8 "O4'" O6  O 0 1 N N N 60.380 125.217 76.591 5.645   1.151  -0.524 "O4'" 4T8 32 
4T8 O4A   O7  O 0 1 N N N 45.089 124.401 69.760 -11.873 2.770  2.430  O4A   4T8 33 
4T8 N4P   N8  N 0 1 N N N 53.237 128.402 76.063 -1.595  -2.539 -0.148 N4P   4T8 34 
4T8 C5P   C17 C 0 1 N N N 52.564 129.039 75.204 -2.752  -2.347 -0.811 C5P   4T8 35 
4T8 O5P   O8  O 0 1 N N N 52.367 130.239 75.290 -3.052  -3.078 -1.731 O5P   4T8 36 
4T8 O6A   O9  O 0 1 N N N 47.654 125.143 69.287 -11.197 1.546  0.355  O6A   4T8 37 
4T8 C6P   C18 C 0 1 N N N 51.996 128.227 74.052 -3.673  -1.224 -0.410 C6P   4T8 38 
4T8 C7P   C19 C 0 1 N N N 50.709 128.879 73.530 -4.906  -1.227 -1.316 C7P   4T8 39 
4T8 N8P   N9  N 0 1 N N N 50.056 127.982 72.575 -5.801  -0.135 -0.927 N8P   4T8 40 
4T8 C9P   C20 C 0 1 N N N 48.833 128.035 72.232 -6.959  0.057  -1.590 C9P   4T8 41 
4T8 O9P   O10 O 0 1 N N N 48.043 128.854 72.712 -7.305  -0.730 -2.445 O9P   4T8 42 
4T8 CAP   C21 C 0 1 N N R 48.377 127.000 71.226 -7.822  1.250  -1.270 CAP   4T8 43 
4T8 OAP   O11 O 0 1 N N N 49.426 126.030 71.100 -7.134  2.103  -0.353 OAP   4T8 44 
4T8 CBP   C22 C 0 1 N N N 48.051 127.509 69.798 -9.133  0.776  -0.640 CBP   4T8 45 
4T8 CCP   C23 C 0 1 N N N 47.158 126.466 69.073 -9.972  1.989  -0.234 CCP   4T8 46 
4T8 CDP   C24 C 0 1 N N N 47.363 128.868 69.745 -9.911  -0.066 -1.653 CDP   4T8 47 
4T8 CEP   C25 C 0 1 N N N 49.388 127.766 69.110 -8.828  -0.070 0.598  CEP   4T8 48 
4T8 OG    O12 O 0 1 N N N 58.970 131.905 77.772 3.070   -7.259 2.255  OG    4T8 49 
4T8 H1    H1  H 0 1 N N N 46.819 121.530 69.628 -14.393 2.030  1.384  H1    4T8 50 
4T8 H2    H2  H 0 1 N N N 60.629 127.818 76.622 4.646   2.356  1.602  H2    4T8 51 
4T8 H3    H3  H 0 1 N N N 62.236 124.526 80.039 9.832   0.272  -0.647 H3    4T8 52 
4T8 H4    H4  H 0 1 N N N 56.364 129.372 79.697 3.834   -5.488 0.742  H4    4T8 53 
4T8 H5    H5  H 0 1 N N N 58.136 125.825 77.860 4.325   -0.968 -1.633 H5    4T8 54 
4T8 H6    H6  H 0 1 N N N 58.971 127.946 79.727 2.895   -2.594 0.980  H6    4T8 55 
4T8 H7    H7  H 0 1 N N N 57.723 128.121 81.007 4.515   -3.197 1.403  H7    4T8 56 
4T8 H8    H8  H 0 1 N N N 64.839 126.036 71.992 7.357   7.376  -1.536 H8    4T8 57 
4T8 H9    H9  H 0 1 N N N 58.115 130.614 80.917 4.501   -5.364 3.170  H9    4T8 58 
4T8 H10   H10 H 0 1 N N N 58.972 131.634 79.974 4.172   -3.733 3.179  H10   4T8 59 
4T8 H12   H12 H 0 1 N N N 63.191 122.827 77.169 9.769   2.337  -0.388 H12   4T8 60 
4T8 H13   H13 H 0 1 N N N 60.233 125.950 79.907 5.727   -1.148 0.726  H13   4T8 61 
4T8 H14   H14 H 0 1 N N N 60.000 127.037 78.496 6.727   -2.042 -0.444 H14   4T8 62 
4T8 H15   H15 H 0 1 N N N 64.194 130.318 72.200 4.026   7.055  2.546  H15   4T8 63 
4T8 H16   H16 H 0 1 N N N 62.652 130.480 72.713 4.589   8.504  1.908  H16   4T8 64 
4T8 H17   H17 H 0 1 N N N 59.271 129.449 79.189 1.862   -4.156 2.653  H17   4T8 65 
4T8 H18   H18 H 0 1 N N N 57.420 130.658 77.163 1.868   -6.432 3.719  H18   4T8 66 
4T8 H19   H19 H 0 1 N N N 59.075 129.985 76.977 1.184   -6.435 2.076  H19   4T8 67 
4T8 H20   H20 H 0 1 N N N 61.478 124.556 74.965 6.578   2.638  -1.659 H20   4T8 68 
4T8 H21   H21 H 0 1 N N N 63.639 125.059 76.524 7.862   2.212  1.046  H21   4T8 69 
4T8 H22   H22 H 0 1 N N N 55.289 129.718 75.954 0.223   -3.764 1.404  H22   4T8 70 
4T8 H23   H23 H 0 1 N N N 55.252 130.465 77.587 1.056   -2.676 0.268  H23   4T8 71 
4T8 H24   H24 H 0 1 N N N 62.500 126.104 78.353 7.934   -0.084 0.795  H24   4T8 72 
4T8 H25   H25 H 0 1 N N N 53.220 129.551 77.828 -0.389  -3.495 -1.574 H25   4T8 73 
4T8 H26   H26 H 0 1 N N N 54.051 127.964 77.955 -1.222  -4.583 -0.437 H26   4T8 74 
4T8 H27   H27 H 0 1 N N N 60.342 124.017 78.264 6.661   0.004  -1.947 H27   4T8 75 
4T8 H28   H28 H 0 1 N N N 44.437 123.712 69.708 -12.448 3.365  2.931  H28   4T8 76 
4T8 H29   H29 H 0 1 N N N 53.352 127.430 75.859 -1.355  -1.954 0.588  H29   4T8 77 
4T8 H30   H30 H 0 1 N N N 51.772 127.208 74.401 -3.983  -1.360 0.626  H30   4T8 78 
4T8 H31   H31 H 0 1 N N N 52.736 128.182 73.239 -3.151  -0.272 -0.511 H31   4T8 79 
4T8 H32   H32 H 0 1 N N N 50.956 129.828 73.031 -4.596  -1.091 -2.352 H32   4T8 80 
4T8 H33   H33 H 0 1 N N N 50.029 129.074 74.373 -5.428  -2.178 -1.216 H33   4T8 81 
4T8 H34   H34 H 0 1 N N N 50.619 127.268 72.158 -5.561  0.450  -0.191 H34   4T8 82 
4T8 H35   H35 H 0 1 N N N 47.475 126.510 71.622 -8.037  1.799  -2.186 H35   4T8 83 
4T8 H36   H36 H 0 1 N N N 49.653 125.695 71.959 -6.910  1.679  0.487  H36   4T8 84 
4T8 H37   H37 H 0 1 N N N 47.155 126.681 67.994 -10.190 2.592  -1.115 H37   4T8 85 
4T8 H38   H38 H 0 1 N N N 46.132 126.535 69.464 -9.418  2.589  0.488  H38   4T8 86 
4T8 H39   H39 H 0 1 N N N 47.987 129.616 70.256 -9.384  -1.005 -1.826 H39   4T8 87 
4T8 H40   H40 H 0 1 N N N 47.220 129.166 68.696 -10.907 -0.275 -1.264 H40   4T8 88 
4T8 H41   H41 H 0 1 N N N 46.385 128.804 70.245 -9.995  0.482  -2.592 H41   4T8 89 
4T8 H42   H42 H 0 1 N N N 49.958 128.513 69.683 -8.274  0.529  1.320  H42   4T8 90 
4T8 H43   H43 H 0 1 N N N 49.960 126.828 69.059 -9.762  -0.408 1.047  H43   4T8 91 
4T8 H44   H44 H 0 1 N N N 49.210 128.143 68.092 -8.230  -0.935 0.309  H44   4T8 92 
4T8 H45   H45 H 0 1 N N N 59.043 132.321 76.921 2.791   -8.177 2.373  H45   4T8 93 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
4T8 CCP   O6A   SING N N 1  
4T8 CCP   CBP   SING N N 2  
4T8 CEP   CBP   SING N N 3  
4T8 P2A   O6A   SING N N 4  
4T8 P2A   O3    SING N N 5  
4T8 P2A   O4A   SING N N 6  
4T8 CDP   CBP   SING N N 7  
4T8 CBP   CAP   SING N N 8  
4T8 OAP   CAP   SING N N 9  
4T8 CAP   C9P   SING N N 10 
4T8 C9P   N8P   SING N N 11 
4T8 C9P   O9P   DOUB N N 12 
4T8 N1    C2    DOUB Y N 13 
4T8 N1    C6    SING Y N 14 
4T8 N8P   C7P   SING N N 15 
4T8 C2    N3    SING Y N 16 
4T8 N6    C6    SING N N 17 
4T8 C6    C5    DOUB Y N 18 
4T8 C7P   C6P   SING N N 19 
4T8 N3    C4    DOUB Y N 20 
4T8 C6P   C5P   SING N N 21 
4T8 C5    C4    SING Y N 22 
4T8 C5    N7    SING Y N 23 
4T8 C4    N9    SING Y N 24 
4T8 N7    C8    DOUB Y N 25 
4T8 C5P   O5P   DOUB N N 26 
4T8 C5P   N4P   SING N N 27 
4T8 N9    C8    SING Y N 28 
4T8 N9    "C1'" SING N N 29 
4T8 "C1'" "O4'" SING N N 30 
4T8 "C1'" "C2'" SING N N 31 
4T8 N4P   C3P   SING N N 32 
4T8 "O4'" "C4'" SING N N 33 
4T8 O2    "C2'" SING N N 34 
4T8 "C2'" "C3'" SING N N 35 
4T8 C2P   C3P   SING N N 36 
4T8 C2P   S1P   SING N N 37 
4T8 S1P   C     SING N N 38 
4T8 CB    OG    SING N N 39 
4T8 CB    CA    SING N N 40 
4T8 "C4'" "C3'" SING N N 41 
4T8 "C4'" C3    SING N N 42 
4T8 "C3'" O1    SING N N 43 
4T8 N     C3    SING N N 44 
4T8 N     S     SING N N 45 
4T8 CA    C     SING N N 46 
4T8 CA    N2    SING N N 47 
4T8 C     C1    SING N N 48 
4T8 O2P   S     DOUB N N 49 
4T8 S     C1    SING N N 50 
4T8 S     O3P   DOUB N N 51 
4T8 O3    H1    SING N N 52 
4T8 C8    H2    SING N N 53 
4T8 O1    H3    SING N N 54 
4T8 C     H4    SING N N 55 
4T8 N     H5    SING N N 56 
4T8 C1    H6    SING N N 57 
4T8 C1    H7    SING N N 58 
4T8 C2    H8    SING N N 59 
4T8 N2    H9    SING N N 60 
4T8 N2    H10   SING N N 61 
4T8 O2    H12   SING N N 62 
4T8 C3    H13   SING N N 63 
4T8 C3    H14   SING N N 64 
4T8 N6    H15   SING N N 65 
4T8 N6    H16   SING N N 66 
4T8 CA    H17   SING N N 67 
4T8 CB    H18   SING N N 68 
4T8 CB    H19   SING N N 69 
4T8 "C1'" H20   SING N N 70 
4T8 "C2'" H21   SING N N 71 
4T8 C2P   H22   SING N N 72 
4T8 C2P   H23   SING N N 73 
4T8 "C3'" H24   SING N N 74 
4T8 C3P   H25   SING N N 75 
4T8 C3P   H26   SING N N 76 
4T8 "C4'" H27   SING N N 77 
4T8 O4A   H28   SING N N 78 
4T8 N4P   H29   SING N N 79 
4T8 C6P   H30   SING N N 80 
4T8 C6P   H31   SING N N 81 
4T8 C7P   H32   SING N N 82 
4T8 C7P   H33   SING N N 83 
4T8 N8P   H34   SING N N 84 
4T8 CAP   H35   SING N N 85 
4T8 OAP   H36   SING N N 86 
4T8 CCP   H37   SING N N 87 
4T8 CCP   H38   SING N N 88 
4T8 CDP   H39   SING N N 89 
4T8 CDP   H40   SING N N 90 
4T8 CDP   H41   SING N N 91 
4T8 CEP   H42   SING N N 92 
4T8 CEP   H43   SING N N 93 
4T8 CEP   H44   SING N N 94 
4T8 OG    H45   SING N N 95 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
4T8 SMILES           ACDLabs              12.01 "OP(OCC(C(C(NCCC(NCCSC(CS(NCC3C(O)C(O)C(n2c1ncnc(c1nc2)N)O3)(=O)=O)C(N)CO)=O)=O)O)(C)C)O" 
4T8 InChI            InChI                1.03  
;InChI=1S/C25H44N9O12PS2/c1-25(2,10-45-47(41)42)20(39)23(40)29-4-3-16(36)28-5-6-48-15(13(26)8-35)9-49(43,44)33-7-14-18(37)19(38)24(46-14)34-12-32-17-21(27)30-11-31-22(17)34/h11-15,18-20,24,33,35,37-39,41-42H,3-10,26H2,1-2H3,(H,28,36)(H,29,40)(H2,27,30,31)/t13-,14-,15+,18-,19-,20+,24-/m1/s1
;
4T8 InChIKey         InChI                1.03  XODIDRLLFHEJAC-ARLJHQDSSA-N 
4T8 SMILES_CANONICAL CACTVS               3.385 "CC(C)(COP(O)O)[C@@H](O)C(=O)NCCC(=O)NCCS[C@@H](C[S](=O)(=O)NC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)[C@H](N)CO" 
4T8 SMILES           CACTVS               3.385 "CC(C)(COP(O)O)[CH](O)C(=O)NCCC(=O)NCCS[CH](C[S](=O)(=O)NC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)[CH](N)CO" 
4T8 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(COP(O)O)[C@H](C(=O)NCCC(=O)NCCS[C@@H](CS(=O)(=O)NC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)[C@@H](CO)N)O" 
4T8 SMILES           "OpenEye OEToolkits" 1.9.2 "CC(C)(COP(O)O)C(C(=O)NCCC(=O)NCCSC(CS(=O)(=O)NCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)C(CO)N)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
4T8 "SYSTEMATIC NAME" ACDLabs              12.01 "5'-({[(2R,3R)-3-amino-2-({2-[(N-{(2R)-4-[(dihydroxyphosphanyl)oxy]-2-hydroxy-3,3-dimethylbutanoyl}-beta-alanyl)amino]ethyl}sulfanyl)-4-hydroxybutyl]sulfonyl}amino)-5'-deoxyadenosine" 
4T8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
;[(3R)-4-[[3-[2-[(2R,3R)-1-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfamoyl]-3-azanyl-4-oxidanyl-butan-2-yl]sulfanylethylamino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphite
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
4T8 "Create component" 2015-05-21 RCSB 
4T8 "Initial release"  2015-12-29 RCSB 
# 
