data_3X8
# 
_chem_comp.id                                    3X8 
_chem_comp.name                                  "biphenyl-4-yl alpha-D-mannopyranoside" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H20 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-04 
_chem_comp.pdbx_modified_date                    2015-05-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        332.348 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3X8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4X50 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3X8 C4  C1  C 0 1 N N S -21.015 -6.834 -11.278 4.044  0.666  0.411  C4  3X8 1  
3X8 C5  C2  C 0 1 N N R -21.465 -5.859 -12.356 2.611  1.176  0.242  C5  3X8 2  
3X8 C6  C3  C 0 1 N N N -22.703 -5.094 -11.875 2.625  2.698  0.092  C6  3X8 3  
3X8 C3  C4  C 0 1 N N S -19.781 -7.573 -11.760 4.028  -0.863 0.500  C3  3X8 4  
3X8 CAH C5  C 0 1 Y N N -21.255 -3.507 -19.729 -5.163 -0.490 1.110  CAH 3X8 5  
3X8 CAI C6  C 0 1 Y N N -21.763 -3.160 -20.979 -6.515 -0.215 1.055  CAI 3X8 6  
3X8 CAJ C7  C 0 1 Y N N -22.503 -4.077 -21.717 -7.052 0.407  -0.058 CAJ 3X8 7  
3X8 CAK C8  C 0 1 Y N N -22.736 -5.346 -21.205 -6.239 0.755  -1.121 CAK 3X8 8  
3X8 CAL C9  C 0 1 Y N N -22.225 -5.693 -19.959 -4.886 0.486  -1.077 CAL 3X8 9  
3X8 CAG C10 C 0 1 Y N N -21.484 -4.778 -19.215 -4.340 -0.141 0.042  CAG 3X8 10 
3X8 CAD C11 C 0 1 Y N N -20.982 -5.152 -17.965 -2.885 -0.429 0.098  CAD 3X8 11 
3X8 CAC C12 C 0 1 Y N N -20.857 -4.234 -16.921 -2.340 -1.056 1.217  CAC 3X8 12 
3X8 CAB C13 C 0 1 Y N N -20.358 -4.633 -15.679 -0.988 -1.322 1.266  CAB 3X8 13 
3X8 CAE C14 C 0 1 Y N N -20.602 -6.472 -17.758 -2.063 -0.079 -0.971 CAE 3X8 14 
3X8 CAF C15 C 0 1 Y N N -20.104 -6.868 -16.526 -0.711 -0.347 -0.916 CAF 3X8 15 
3X8 CAA C16 C 0 1 Y N N -19.979 -5.960 -15.482 -0.170 -0.967 0.202  CAA 3X8 16 
3X8 O1  O1  O 0 1 N N N -19.483 -6.446 -14.305 1.162  -1.231 0.253  O1  3X8 17 
3X8 C1  C17 C 0 1 N N R -19.228 -5.612 -13.160 1.945  -0.838 -0.876 C1  3X8 18 
3X8 O5  O2  O 0 1 N N N -20.408 -4.929 -12.668 2.031  0.587  -0.924 O5  3X8 19 
3X8 O6  O3  O 0 1 N N N -22.390 -4.359 -10.688 1.283  3.186  0.051  O6  3X8 20 
3X8 O4  O4  O 0 1 N N N -22.068 -7.769 -11.033 4.606  1.208  1.608  O4  3X8 21 
3X8 O3  O5  O 0 1 N N N -19.336 -8.503 -10.761 5.368  -1.352 0.583  O3  3X8 22 
3X8 C2  C18 C 0 1 N N S -18.699 -6.540 -12.068 3.353  -1.430 -0.753 C2  3X8 23 
3X8 O2  O6  O 0 1 N N N -18.378 -5.780 -10.893 4.120  -1.082 -1.908 O2  3X8 24 
3X8 H41 H1  H 0 1 N N N -20.772 -6.276 -10.362 4.644  0.974  -0.445 H41 3X8 25 
3X8 H5  H2  H 0 1 N N N -21.735 -6.430 -13.257 2.022  0.903  1.118  H5  3X8 26 
3X8 H62 H3  H 0 1 N N N -23.029 -4.397 -12.661 3.148  3.142  0.939  H62 3X8 27 
3X8 H61 H4  H 0 1 N N N -23.512 -5.808 -11.660 3.138  2.967  -0.832 H61 3X8 28 
3X8 H31 H5  H 0 1 N N N -20.029 -8.110 -12.687 3.472  -1.171 1.386  H31 3X8 29 
3X8 HAH H6  H 0 1 N N N -20.684 -2.789 -19.160 -4.744 -0.971 1.982  HAH 3X8 30 
3X8 HAI H7  H 0 1 N N N -21.581 -2.173 -21.377 -7.154 -0.485 1.883  HAI 3X8 31 
3X8 HAJ H8  H 0 1 N N N -22.895 -3.803 -22.685 -8.110 0.619  -0.097 HAJ 3X8 32 
3X8 HAK H9  H 0 1 N N N -23.312 -6.062 -21.773 -6.664 1.240  -1.988 HAK 3X8 33 
3X8 HAL H10 H 0 1 N N N -22.405 -6.682 -19.564 -4.252 0.758  -1.907 HAL 3X8 34 
3X8 HAC H11 H 0 1 N N N -21.149 -3.206 -17.075 -2.976 -1.332 2.045  HAC 3X8 35 
3X8 HAB H12 H 0 1 N N N -20.266 -3.917 -14.875 -0.565 -1.808 2.133  HAB 3X8 36 
3X8 HAE H13 H 0 1 N N N -20.695 -7.191 -18.558 -2.483 0.403  -1.842 HAE 3X8 37 
3X8 HAF H14 H 0 1 N N N -19.809 -7.896 -16.376 -0.073 -0.076 -1.745 HAF 3X8 38 
3X8 H1  H15 H 0 1 N N N -18.448 -4.875 -13.402 1.475  -1.205 -1.789 H1  3X8 39 
3X8 H63 H16 H 0 1 N N N -23.161 -3.887 -10.395 1.216  4.146  -0.043 H63 3X8 40 
3X8 H42 H17 H 0 1 N N N -21.797 -8.383 -10.361 5.515  0.924  1.779  H42 3X8 41 
3X8 H32 H18 H 0 1 N N N -20.024 -9.134 -10.586 5.433  -2.315 0.642  H32 3X8 42 
3X8 H21 H19 H 0 1 N N N -17.804 -7.059 -12.442 3.287  -2.515 -0.672 H21 3X8 43 
3X8 H22 H20 H 0 1 N N N -18.050 -6.363 -10.218 3.747  -1.405 -2.739 H22 3X8 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3X8 CAJ CAK DOUB Y N 1  
3X8 CAJ CAI SING Y N 2  
3X8 CAK CAL SING Y N 3  
3X8 CAI CAH DOUB Y N 4  
3X8 CAL CAG DOUB Y N 5  
3X8 CAH CAG SING Y N 6  
3X8 CAG CAD SING N N 7  
3X8 CAD CAE DOUB Y N 8  
3X8 CAD CAC SING Y N 9  
3X8 CAE CAF SING Y N 10 
3X8 CAC CAB DOUB Y N 11 
3X8 CAF CAA DOUB Y N 12 
3X8 CAB CAA SING Y N 13 
3X8 CAA O1  SING N N 14 
3X8 O1  C1  SING N N 15 
3X8 C1  O5  SING N N 16 
3X8 C1  C2  SING N N 17 
3X8 O5  C5  SING N N 18 
3X8 C5  C6  SING N N 19 
3X8 C5  C4  SING N N 20 
3X8 C2  C3  SING N N 21 
3X8 C2  O2  SING N N 22 
3X8 C6  O6  SING N N 23 
3X8 C3  C4  SING N N 24 
3X8 C3  O3  SING N N 25 
3X8 C4  O4  SING N N 26 
3X8 C4  H41 SING N N 27 
3X8 C5  H5  SING N N 28 
3X8 C6  H62 SING N N 29 
3X8 C6  H61 SING N N 30 
3X8 C3  H31 SING N N 31 
3X8 CAH HAH SING N N 32 
3X8 CAI HAI SING N N 33 
3X8 CAJ HAJ SING N N 34 
3X8 CAK HAK SING N N 35 
3X8 CAL HAL SING N N 36 
3X8 CAC HAC SING N N 37 
3X8 CAB HAB SING N N 38 
3X8 CAE HAE SING N N 39 
3X8 CAF HAF SING N N 40 
3X8 C1  H1  SING N N 41 
3X8 O6  H63 SING N N 42 
3X8 O4  H42 SING N N 43 
3X8 O3  H32 SING N N 44 
3X8 C2  H21 SING N N 45 
3X8 O2  H22 SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3X8 SMILES           ACDLabs              12.01 "O(c2ccc(c1ccccc1)cc2)C3OC(C(O)C(O)C3O)CO"                                                                                               
3X8 InChI            InChI                1.03  "InChI=1S/C18H20O6/c19-10-14-15(20)16(21)17(22)18(24-14)23-13-8-6-12(7-9-13)11-4-2-1-3-5-11/h1-9,14-22H,10H2/t14-,15-,16+,17+,18+/m1/s1" 
3X8 InChIKey         InChI                1.03  SZBKRKVDBPBJHL-ZBRFXRBCSA-N                                                                                                              
3X8 SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H](Oc2ccc(cc2)c3ccccc3)[C@@H](O)[C@@H](O)[C@@H]1O"                                                                          
3X8 SMILES           CACTVS               3.385 "OC[CH]1O[CH](Oc2ccc(cc2)c3ccccc3)[CH](O)[CH](O)[CH]1O"                                                                                  
3X8 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)c2ccc(cc2)O[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O"                                                                       
3X8 SMILES           "OpenEye OEToolkits" 1.9.2 "c1ccc(cc1)c2ccc(cc2)OC3C(C(C(C(O3)CO)O)O)O"                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3X8 "SYSTEMATIC NAME" ACDLabs              12.01 "biphenyl-4-yl alpha-D-mannopyranoside"                                   
3X8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R,3S,4S,5S,6R)-2-(hydroxymethyl)-6-(4-phenylphenoxy)oxane-3,4,5-triol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3X8 "Create component" 2014-12-04 EBI  
3X8 "Initial release"  2015-05-20 RCSB 
# 
