data_3Q8
# 
_chem_comp.id                                    3Q8 
_chem_comp.name                                  "3-[2-[[5-[[(3E,4S)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H40 N4 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-10-03 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        588.694 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3Q8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WKK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3Q8 CMB C1  C 0 1 N N N N N N 6.999  -25.954 -5.984 7.453  0.647  2.267  CMB 3Q8 1  
3Q8 C2B C2  C 0 1 N N N N N N 6.360  -25.723 -4.601 6.972  0.250  0.895  C2B 3Q8 2  
3Q8 C3B C3  C 0 1 N N N N N N 5.380  -26.500 -4.124 7.725  0.100  -0.205 C3B 3Q8 3  
3Q8 CAB C4  C 0 1 N N N N N N 4.854  -27.554 -4.819 9.215  0.292  -0.320 CAB 3Q8 4  
3Q8 CBB C5  C 0 1 N N N N N N 3.679  -28.361 -4.367 9.917  -1.056 -0.153 CBB 3Q8 5  
3Q8 C4B C6  C 0 1 N N N N N N 5.085  -26.003 -2.909 6.780  -0.297 -1.293 C4B 3Q8 6  
3Q8 O_B O1  O 0 1 N N N N N N 4.224  -26.415 -2.128 7.074  -0.527 -2.443 O_B 3Q8 7  
3Q8 N_B N1  N 0 1 N N N N N N 5.894  -24.971 -2.617 5.544  -0.354 -0.765 N_B 3Q8 8  
3Q8 C1B C7  C 0 1 N N N N N N 6.700  -24.778 -3.663 5.579  -0.054 0.501  C1B 3Q8 9  
3Q8 CHB C8  C 0 1 N N N N N N 7.617  -23.787 -3.775 4.386  -0.019 1.422  CHB 3Q8 10 
3Q8 C4A C9  C 0 1 Y N N N N N 8.367  -23.211 -2.789 3.145  -0.390 0.650  C4A 3Q8 11 
3Q8 N_A N2  N 0 1 Y N N N N N 8.896  -21.976 -2.949 2.276  0.484  0.067  N_A 3Q8 12 
3Q8 C3A C10 C 0 1 Y N N N N N 8.750  -23.643 -1.543 2.707  -1.643 0.414  C3A 3Q8 13 
3Q8 CMA C11 C 0 1 N N N N N N 8.450  -25.003 -0.924 3.364  -2.919 0.871  CMA 3Q8 14 
3Q8 C2A C12 C 0 1 Y N N N N N 9.525  -22.665 -0.987 1.520  -1.539 -0.339 C2A 3Q8 15 
3Q8 CAA C13 C 0 1 N N N N N N 10.271 -22.721 0.383  0.675  -2.684 -0.835 CAA 3Q8 16 
3Q8 CBA C14 C 0 1 N N N N N N 9.494  -22.263 1.607  -0.380 -3.032 0.217  CBA 3Q8 17 
3Q8 CGA C15 C 0 1 N N N N N N 8.340  -23.190 2.020  -1.225 -4.177 -0.280 CGA 3Q8 18 
3Q8 O1A O2  O 0 1 N N N N N N 8.618  -24.311 2.512  -2.221 -4.656 0.482  O1A 3Q8 19 
3Q8 O2A O3  O 0 1 N N N N N N 7.197  -22.706 1.937  -1.005 -4.665 -1.363 O2A 3Q8 20 
3Q8 C1A C16 C 0 1 Y N N N N N 9.643  -21.604 -1.875 1.281  -0.226 -0.536 C1A 3Q8 21 
3Q8 CHA C17 C 0 1 N N N N N N 10.364 -20.406 -1.656 0.116  0.355  -1.296 CHA 3Q8 22 
3Q8 C4D C18 C 0 1 Y N N N N N 10.521 -19.262 -2.464 -1.071 0.481  -0.376 C4D 3Q8 23 
3Q8 N_D N3  N 0 1 Y N N N N N 9.878  -18.893 -3.613 -2.073 -0.433 -0.235 N_D 3Q8 24 
3Q8 C3D C19 C 0 1 Y N N N N N 11.377 -18.219 -2.180 -1.321 1.513  0.454  C3D 3Q8 25 
3Q8 CAD C20 C 0 1 N N N N N N 12.369 -18.045 -0.998 -0.470 2.744  0.629  CAD 3Q8 26 
3Q8 CBD C21 C 0 1 N N N N N N 11.589 -17.968 0.323  -0.923 3.822  -0.357 CBD 3Q8 27 
3Q8 CGD C22 C 0 1 N N N N N N 12.629 -17.624 1.467  -0.072 5.053  -0.183 CGD 3Q8 28 
3Q8 O1D O4  O 0 1 N N N N N N 13.270 -18.561 1.955  -0.290 6.134  -0.948 O1D 3Q8 29 
3Q8 O2D O5  O 0 1 N N N N N N 12.803 -16.439 1.836  0.807  5.067  0.646  O2D 3Q8 30 
3Q8 C2D C23 C 0 1 Y N N N N N 11.239 -17.268 -3.153 -2.526 1.230  1.128  C2D 3Q8 31 
3Q8 CMD C24 C 0 1 N N N N N N 12.039 -15.957 -3.201 -3.199 2.102  2.156  CMD 3Q8 32 
3Q8 C1D C25 C 0 1 Y N N N N N 10.300 -17.668 -4.052 -2.960 0.031  0.691  C1D 3Q8 33 
3Q8 CHD C26 C 0 1 N N N N N N 9.974  -16.897 -5.165 -4.214 -0.673 1.143  CHD 3Q8 34 
3Q8 C4C C27 C 0 1 N N N N N N 8.982  -17.034 -6.116 -5.389 -0.168 0.345  C4C 3Q8 35 
3Q8 N_C N4  N 0 1 N N N N N N 8.075  -18.018 -6.233 -5.306 0.739  -0.587 N_C 3Q8 36 
3Q8 C1C C28 C 0 1 N N N N N N 7.326  -17.785 -7.314 -6.472 1.036  -1.164 C1C 3Q8 37 
3Q8 O_C O6  O 0 1 N N N N N N 6.395  -18.516 -7.708 -6.655 1.843  -2.053 O_C 3Q8 38 
3Q8 C2C C29 C 0 1 N N S N N N 7.770  -16.617 -8.015 -7.527 0.172  -0.499 C2C 3Q8 39 
3Q8 CMC C30 C 0 1 N N N N N N 6.923  -15.749 -8.909 -8.184 -0.761 -1.517 CMC 3Q8 40 
3Q8 C3C C31 C 0 1 N N N N N N 8.827  -16.175 -7.173 -6.720 -0.624 0.512  C3C 3Q8 41 
3Q8 CAC C32 C 0 1 N N N N N N 9.583  -15.063 -7.347 -7.168 -1.546 1.372  CAC 3Q8 42 
3Q8 CBC C33 C 0 1 N N N N N N 9.436  -14.054 -8.474 -8.634 -1.894 1.409  CBC 3Q8 43 
3Q8 H1  H1  H 0 1 N N N N N N 7.778  -25.197 -6.160 7.424  1.732  2.363  H1  3Q8 44 
3Q8 H2  H2  H 0 1 N N N N N N 7.449  -26.957 -6.017 6.808  0.197  3.022  H2  3Q8 45 
3Q8 H3  H3  H 0 1 N N N N N N 6.226  -25.873 -6.763 8.476  0.297  2.408  H3  3Q8 46 
3Q8 H4  H4  H 0 1 N N N N N N 5.679  -28.272 -4.937 9.453  0.707  -1.300 H4  3Q8 47 
3Q8 H5  H5  H 0 1 N N N N N N 4.575  -27.150 -5.803 9.554  0.978  0.457  H5  3Q8 48 
3Q8 H6  H6  H 0 1 N N N N N N 3.465  -29.145 -5.109 9.679  -1.471 0.827  H6  3Q8 49 
3Q8 H7  H7  H 0 1 N N N N N N 3.906  -28.827 -3.397 9.578  -1.742 -0.929 H7  3Q8 50 
3Q8 H8  H8  H 0 1 N N N N N N 2.802  -27.705 -4.263 10.995 -0.917 -0.236 H8  3Q8 51 
3Q8 H9  H9  H 0 1 N N N N N N 8.355  -24.173 -4.494 4.534  -0.729 2.235  H9  3Q8 52 
3Q8 H10 H10 H 0 1 N N N N N N 7.066  -22.950 -4.228 4.273  0.984  1.832  H10 3Q8 53 
3Q8 H11 H11 H 0 1 N N N N N N 8.755  -21.406 -3.758 2.354  1.451  0.079  H11 3Q8 54 
3Q8 H12 H12 H 0 1 N N N N N N 9.236  -25.718 -1.210 2.974  -3.199 1.850  H12 3Q8 55 
3Q8 H13 H13 H 0 1 N N N N N N 8.421  -24.909 0.172  3.152  -3.714 0.155  H13 3Q8 56 
3Q8 H14 H14 H 0 1 N N N N N N 7.476  -25.364 -1.287 4.441  -2.769 0.938  H14 3Q8 57 
3Q8 H15 H15 H 0 1 N N N N N N 10.575 -23.764 0.553  0.182  -2.396 -1.763 H15 3Q8 58 
3Q8 H16 H16 H 0 1 N N N N N N 11.166 -22.087 0.301  1.309  -3.552 -1.015 H16 3Q8 59 
3Q8 H17 H17 H 0 1 N N N N N N 10.196 -22.192 2.451  0.113  -3.320 1.145  H17 3Q8 60 
3Q8 H18 H18 H 0 1 N N N N N N 9.075  -21.268 1.394  -1.014 -2.164 0.397  H18 3Q8 61 
3Q8 H19 H19 H 0 1 N N N N N N 7.821  -24.733 2.811  -2.735 -5.391 0.122  H19 3Q8 62 
3Q8 H20 H20 H 0 1 N N N N N N 11.395 -20.747 -1.479 0.386  1.340  -1.677 H20 3Q8 63 
3Q8 H21 H21 H 0 1 N N N N N N 9.942  -20.012 -0.720 -0.138 -0.300 -2.129 H21 3Q8 64 
3Q8 H22 H22 H 0 1 N N N N N N 9.186  -19.449 -4.074 -2.144 -1.273 -0.715 H22 3Q8 65 
3Q8 H23 H23 H 0 1 N N N N N N 13.056 -18.903 -0.968 -0.575 3.117  1.648  H23 3Q8 66 
3Q8 H24 H24 H 0 1 N N N N N N 12.945 -17.118 -1.137 0.574  2.494  0.440  H24 3Q8 67 
3Q8 H25 H25 H 0 1 N N N N N N 10.823 -17.181 0.262  -0.818 3.449  -1.376 H25 3Q8 68 
3Q8 H26 H26 H 0 1 N N N N N N 11.106 -18.934 0.532  -1.967 4.073  -0.168 H26 3Q8 69 
3Q8 H27 H27 H 0 1 N N N N N N 13.870 -18.227 2.611  0.282  6.900  -0.799 H27 3Q8 70 
3Q8 H28 H28 H 0 1 N N N N N N 11.495 -15.175 -2.651 -3.889 2.783  1.659  H28 3Q8 71 
3Q8 H29 H29 H 0 1 N N N N N N 13.025 -16.112 -2.738 -3.750 1.476  2.859  H29 3Q8 72 
3Q8 H30 H30 H 0 1 N N N N N N 12.170 -15.646 -4.248 -2.446 2.677  2.695  H30 3Q8 73 
3Q8 H31 H31 H 0 1 N N N N N N 10.902 -16.887 -5.756 -4.104 -1.747 0.987  H31 3Q8 74 
3Q8 H32 H32 H 0 1 N N N N N N 9.796  -15.896 -4.745 -4.381 -0.475 2.201  H32 3Q8 75 
3Q8 H33 H33 H 0 1 N N N N N N 8.371  -17.109 -8.794 -8.274 0.790  -0.001 H33 3Q8 76 
3Q8 H34 H34 H 0 1 N N N N N N 7.534  -14.926 -9.308 -7.423 -1.391 -1.977 H34 3Q8 77 
3Q8 H35 H35 H 0 1 N N N N N N 6.532  -16.352 -9.741 -8.919 -1.389 -1.013 H35 3Q8 78 
3Q8 H36 H36 H 0 1 N N N N N N 6.084  -15.335 -8.330 -8.679 -0.169 -2.286 H36 3Q8 79 
3Q8 H37 H37 H 0 1 N N N N N N 10.359 -14.878 -6.619 -6.479 -2.040 2.041  H37 3Q8 80 
3Q8 H38 H38 H 0 1 N N N N N N 10.186 -13.258 -8.355 -9.213 -1.003 1.652  H38 3Q8 81 
3Q8 H39 H39 H 0 1 N N N N N N 9.587  -14.559 -9.440 -8.941 -2.273 0.434  H39 3Q8 82 
3Q8 H40 H40 H 0 1 N N N N N N 8.428  -13.615 -8.444 -8.807 -2.658 2.167  H40 3Q8 83 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3Q8 CMC C2C SING N N 1  
3Q8 CBC CAC SING N N 2  
3Q8 C2C C1C SING N N 3  
3Q8 C2C C3C SING N N 4  
3Q8 O_C C1C DOUB N N 5  
3Q8 CAC C3C DOUB N E 6  
3Q8 C1C N_C SING N N 7  
3Q8 C3C C4C SING N N 8  
3Q8 N_C C4C DOUB N N 9  
3Q8 C4C CHD SING N N 10 
3Q8 CMB C2B SING N N 11 
3Q8 CHD C1D SING N N 12 
3Q8 CAB CBB SING N N 13 
3Q8 CAB C3B SING N N 14 
3Q8 C2B C3B DOUB N N 15 
3Q8 C2B C1B SING N N 16 
3Q8 C3B C4B SING N N 17 
3Q8 C1D N_D SING Y N 18 
3Q8 C1D C2D DOUB Y N 19 
3Q8 CHB C1B SING N N 20 
3Q8 CHB C4A SING N N 21 
3Q8 C1B N_B DOUB N N 22 
3Q8 N_D C4D SING Y N 23 
3Q8 CMD C2D SING N N 24 
3Q8 C2D C3D SING Y N 25 
3Q8 N_A C4A SING Y N 26 
3Q8 N_A C1A SING Y N 27 
3Q8 C4B N_B SING N N 28 
3Q8 C4B O_B DOUB N N 29 
3Q8 C4A C3A DOUB Y N 30 
3Q8 C4D C3D DOUB Y N 31 
3Q8 C4D CHA SING N N 32 
3Q8 C3D CAD SING N N 33 
3Q8 C1A CHA SING N N 34 
3Q8 C1A C2A DOUB Y N 35 
3Q8 C3A C2A SING Y N 36 
3Q8 C3A CMA SING N N 37 
3Q8 CAD CBD SING N N 38 
3Q8 C2A CAA SING N N 39 
3Q8 CBD CGD SING N N 40 
3Q8 CAA CBA SING N N 41 
3Q8 CGD O2D DOUB N N 42 
3Q8 CGD O1D SING N N 43 
3Q8 CBA CGA SING N N 44 
3Q8 O2A CGA DOUB N N 45 
3Q8 CGA O1A SING N N 46 
3Q8 CMB H1  SING N N 47 
3Q8 CMB H2  SING N N 48 
3Q8 CMB H3  SING N N 49 
3Q8 CAB H4  SING N N 50 
3Q8 CAB H5  SING N N 51 
3Q8 CBB H6  SING N N 52 
3Q8 CBB H7  SING N N 53 
3Q8 CBB H8  SING N N 54 
3Q8 CHB H9  SING N N 55 
3Q8 CHB H10 SING N N 56 
3Q8 N_A H11 SING N N 57 
3Q8 CMA H12 SING N N 58 
3Q8 CMA H13 SING N N 59 
3Q8 CMA H14 SING N N 60 
3Q8 CAA H15 SING N N 61 
3Q8 CAA H16 SING N N 62 
3Q8 CBA H17 SING N N 63 
3Q8 CBA H18 SING N N 64 
3Q8 O1A H19 SING N N 65 
3Q8 CHA H20 SING N N 66 
3Q8 CHA H21 SING N N 67 
3Q8 N_D H22 SING N N 68 
3Q8 CAD H23 SING N N 69 
3Q8 CAD H24 SING N N 70 
3Q8 CBD H25 SING N N 71 
3Q8 CBD H26 SING N N 72 
3Q8 O1D H27 SING N N 73 
3Q8 CMD H28 SING N N 74 
3Q8 CMD H29 SING N N 75 
3Q8 CMD H30 SING N N 76 
3Q8 CHD H31 SING N N 77 
3Q8 CHD H32 SING N N 78 
3Q8 C2C H33 SING N N 79 
3Q8 CMC H34 SING N N 80 
3Q8 CMC H35 SING N N 81 
3Q8 CMC H36 SING N N 82 
3Q8 CAC H37 SING N N 83 
3Q8 CBC H38 SING N N 84 
3Q8 CBC H39 SING N N 85 
3Q8 CBC H40 SING N N 86 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3Q8 InChI            InChI                1.03  "InChI=1S/C33H40N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h7,19,34-35H,8-15H2,1-6H3,(H,38,39)(H,40,41)/b20-7+/t19-/m0/s1" 
3Q8 InChIKey         InChI                1.03  YHFJLIYOVARRSS-AYZAYIPBSA-N                                                                                                                                                                                               
3Q8 SMILES_CANONICAL CACTVS               3.385 "CCC1=C(C)C(=NC1=O)Cc2[nH]c(Cc3[nH]c(CC/4=NC(=O)[C@@H](C)C/4=C/C)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C"                                                                                                                           
3Q8 SMILES           CACTVS               3.385 "CCC1=C(C)C(=NC1=O)Cc2[nH]c(Cc3[nH]c(CC4=NC(=O)[CH](C)C4=CC)c(C)c3CCC(O)=O)c(CCC(O)=O)c2C"                                                                                                                                
3Q8 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCC1=C(C(=NC1=O)Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC\4=NC(=O)[C@H](/C4=C\C)C)C)CCC(=O)O)CCC(=O)O)C)C"                                                                                                                        
3Q8 SMILES           "OpenEye OEToolkits" 1.9.2 "CCC1=C(C(=NC1=O)Cc2c(c(c([nH]2)Cc3c(c(c([nH]3)CC4=NC(=O)C(C4=CC)C)C)CCC(=O)O)CCC(=O)O)C)C"                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           3Q8 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   1.9.2 
_pdbx_chem_comp_identifier.identifier        "3-[2-[[5-[[(3E,4S)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrol-2-yl]methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3Q8 "Create component" 2014-10-03 RCSB 
3Q8 "Initial release"  2015-12-23 RCSB 
3Q8 "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            3Q8 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CBC 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
