data_3L8
# 
_chem_comp.id                                    3L8 
_chem_comp.name                                  "[(2-{[2-(6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl](2-phosphonoethyl)amino}ethoxy)methyl]phosphonic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H21 N5 O8 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-09-11 
_chem_comp.pdbx_modified_date                    2015-01-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        425.271 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3L8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4RAQ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3L8 OAF OAF O 0 1 N N N 61.503 -2.740  5.657  -6.095 -2.410 -0.618 OAF 3L8 1  
3L8 PBA PBA P 0 1 N N N 61.814 -3.039  4.146  -4.626 -1.783 -0.421 PBA 3L8 2  
3L8 OAG OAG O 0 1 N N N 62.245 -1.708  3.431  -4.284 -0.951 -1.597 OAG 3L8 3  
3L8 OAC OAC O 0 1 N N N 60.607 -3.646  3.486  -4.604 -0.872 0.906  OAC 3L8 4  
3L8 CAP CAP C 0 1 N N N 63.230 -4.220  3.994  -3.408 -3.129 -0.255 CAP 3L8 5  
3L8 OAT OAT O 0 1 N N N 63.629 -4.547  2.689  -2.103 -2.573 -0.080 OAT 3L8 6  
3L8 CAJ CAJ C 0 1 N N N 64.959 -4.326  2.308  -1.871 -2.032 1.222  CAJ 3L8 7  
3L8 CAK CAK C 0 1 N N N 65.666 -5.532  1.758  -0.451 -1.467 1.294  CAK 3L8 8  
3L8 NAX NAX N 0 1 N N N 66.490 -5.388  0.570  -0.330 -0.329 0.373  NAX 3L8 9  
3L8 CAM CAM C 0 1 N N N 66.937 -6.701  0.113  -1.175 0.792  0.808  CAM 3L8 10 
3L8 CAO CAO C 0 1 N N N 66.659 -7.189  -1.282 -1.341 1.783  -0.346 CAO 3L8 11 
3L8 PAZ PAZ P 0 1 N N N 67.713 -8.590  -1.832 -2.370 3.185  0.201  PAZ 3L8 12 
3L8 OAD OAD O 0 1 N N N 67.985 -9.581  -0.666 -2.654 4.161  -1.048 OAD 3L8 13 
3L8 OAE OAE O 0 1 N N N 67.009 -9.392  -2.972 -3.654 2.677  0.732  OAE 3L8 14 
3L8 OAB OAB O 0 1 N N N 69.013 -8.028  -2.320 -1.597 4.000  1.354  OAB 3L8 15 
3L8 CAL CAL C 0 1 N N N 65.799 -4.608  -0.467 1.071  0.090  0.236  CAL 3L8 16 
3L8 CAN CAN C 0 1 N N N 66.364 -3.192  -0.630 1.816  -0.904 -0.656 CAN 3L8 17 
3L8 N9  N9  N 0 1 Y N N 66.383 -2.616  -1.983 3.181  -0.425 -0.889 N9  3L8 18 
3L8 C4  C4  C 0 1 Y N N 65.611 -1.524  -2.366 4.259  -0.626 -0.072 C4  3L8 19 
3L8 N3  N3  N 0 1 N N N 64.698 -0.765  -1.664 4.443  -1.257 1.097  N3  3L8 20 
3L8 C2  C2  C 0 1 N N N 64.076 0.234   -2.305 5.615  -1.293 1.668  C2  3L8 21 
3L8 N1  N1  N 0 1 N N N 64.335 0.498   -3.605 6.705  -0.700 1.120  N1  3L8 22 
3L8 C6  C6  C 0 1 N N N 65.210 -0.208  -4.342 6.606  -0.042 -0.057 C6  3L8 23 
3L8 O6  O6  O 0 1 N N N 65.441 0.109   -5.648 7.579  0.494  -0.558 O6  3L8 24 
3L8 C5  C5  C 0 1 Y N N 65.899 -1.277  -3.694 5.340  0.007  -0.692 C5  3L8 25 
3L8 N7  N7  N 0 1 Y N N 66.845 -2.204  -4.098 4.879  0.556  -1.840 N7  3L8 26 
3L8 C8  C8  C 0 1 Y N N 67.123 -3.006  -3.036 3.609  0.298  -1.962 C8  3L8 27 
3L8 H1  H1  H 0 1 N N N 61.638 -1.816  5.832  -6.795 -1.750 -0.713 H1  3L8 28 
3L8 H2  H2  H 0 1 N N N 60.336 -3.101  2.757  -4.819 -1.353 1.717  H2  3L8 29 
3L8 H3  H3  H 0 1 N N N 62.944 -5.153  4.501  -3.660 -3.742 0.611  H3  3L8 30 
3L8 H4  H4  H 0 1 N N N 64.095 -3.774  4.507  -3.423 -3.746 -1.153 H4  3L8 31 
3L8 H5  H5  H 0 1 N N N 65.514 -3.977  3.191  -2.589 -1.236 1.418  H5  3L8 32 
3L8 H6  H6  H 0 1 N N N 64.968 -3.542  1.536  -1.987 -2.819 1.968  H6  3L8 33 
3L8 H7  H7  H 0 1 N N N 64.893 -6.279  1.525  -0.243 -1.136 2.311  H7  3L8 34 
3L8 H8  H8  H 0 1 N N N 66.318 -5.915  2.557  0.262  -2.241 1.011  H8  3L8 35 
3L8 H10 H10 H 0 1 N N N 66.484 -7.436  0.794  -2.153 0.415  1.107  H10 3L8 36 
3L8 H11 H11 H 0 1 N N N 68.030 -6.715  0.233  -0.705 1.294  1.654  H11 3L8 37 
3L8 H12 H12 H 0 1 N N N 66.816 -6.350  -1.976 -0.362 2.149  -0.654 H12 3L8 38 
3L8 H13 H13 H 0 1 N N N 65.609 -7.512  -1.329 -1.824 1.284  -1.186 H13 3L8 39 
3L8 H14 H14 H 0 1 N N N 67.667 -10.444 -0.903 -3.197 4.930  -0.830 H14 3L8 40 
3L8 H15 H15 H 0 1 N N N 69.145 -8.275  -3.228 -0.745 4.363  1.076  H15 3L8 41 
3L8 H16 H16 H 0 1 N N N 64.735 -4.532  -0.197 1.111  1.083  -0.213 H16 3L8 42 
3L8 H17 H17 H 0 1 N N N 65.897 -5.137  -1.427 1.540  0.118  1.220  H17 3L8 43 
3L8 H18 H18 H 0 1 N N N 67.402 -3.208  -0.265 1.851  -1.877 -0.166 H18 3L8 44 
3L8 H19 H19 H 0 1 N N N 65.763 -2.523  0.004  1.296  -0.997 -1.610 H19 3L8 45 
3L8 H20 H20 H 0 1 N N N 63.356 0.838   -1.774 5.720  -1.812 2.609  H20 3L8 46 
3L8 H21 H21 H 0 1 N N N 63.851 1.257   -4.041 7.560  -0.747 1.575  H21 3L8 47 
3L8 H22 H22 H 0 1 N N N 67.826 -3.826  -3.038 2.987  0.616  -2.785 H22 3L8 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3L8 O6  C6  DOUB N N 1  
3L8 C6  C5  SING N N 2  
3L8 C6  N1  SING N N 3  
3L8 N7  C5  SING Y N 4  
3L8 N7  C8  DOUB Y N 5  
3L8 C5  C4  DOUB Y N 6  
3L8 N1  C2  SING N N 7  
3L8 C8  N9  SING Y N 8  
3L8 OAE PAZ DOUB N N 9  
3L8 C4  N9  SING Y N 10 
3L8 C4  N3  SING N N 11 
3L8 OAB PAZ SING N N 12 
3L8 C2  N3  DOUB N N 13 
3L8 N9  CAN SING N N 14 
3L8 PAZ CAO SING N N 15 
3L8 PAZ OAD SING N N 16 
3L8 CAO CAM SING N N 17 
3L8 CAN CAL SING N N 18 
3L8 CAL NAX SING N N 19 
3L8 CAM NAX SING N N 20 
3L8 NAX CAK SING N N 21 
3L8 CAK CAJ SING N N 22 
3L8 CAJ OAT SING N N 23 
3L8 OAT CAP SING N N 24 
3L8 OAG PBA DOUB N N 25 
3L8 OAC PBA SING N N 26 
3L8 CAP PBA SING N N 27 
3L8 PBA OAF SING N N 28 
3L8 OAF H1  SING N N 29 
3L8 OAC H2  SING N N 30 
3L8 CAP H3  SING N N 31 
3L8 CAP H4  SING N N 32 
3L8 CAJ H5  SING N N 33 
3L8 CAJ H6  SING N N 34 
3L8 CAK H7  SING N N 35 
3L8 CAK H8  SING N N 36 
3L8 CAM H10 SING N N 37 
3L8 CAM H11 SING N N 38 
3L8 CAO H12 SING N N 39 
3L8 CAO H13 SING N N 40 
3L8 OAD H14 SING N N 41 
3L8 OAB H15 SING N N 42 
3L8 CAL H16 SING N N 43 
3L8 CAL H17 SING N N 44 
3L8 CAN H18 SING N N 45 
3L8 CAN H19 SING N N 46 
3L8 C2  H20 SING N N 47 
3L8 N1  H21 SING N N 48 
3L8 C8  H22 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3L8 SMILES           ACDLabs              12.01 "O=P(O)(O)COCCN(CCP(=O)(O)O)CCn1c2N=CNC(=O)c2nc1"                                                                                                           
3L8 InChI            InChI                1.03  "InChI=1S/C12H21N5O8P2/c18-12-10-11(13-7-14-12)17(8-15-10)2-1-16(4-6-26(19,20)21)3-5-25-9-27(22,23)24/h7-8H,1-6,9H2,(H,13,14,18)(H2,19,20,21)(H2,22,23,24)" 
3L8 InChIKey         InChI                1.03  DOQZRNUAQKXUPD-UHFFFAOYSA-N                                                                                                                                 
3L8 SMILES_CANONICAL CACTVS               3.385 "O[P](O)(=O)CCN(CCOC[P](O)(O)=O)CCn1cnc2C(=O)NC=Nc12"                                                                                                       
3L8 SMILES           CACTVS               3.385 "O[P](O)(=O)CCN(CCOC[P](O)(O)=O)CCn1cnc2C(=O)NC=Nc12"                                                                                                       
3L8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1CCN(CCOCP(=O)(O)O)CCP(=O)(O)O)N=CNC2=O"                                                                                                           
3L8 SMILES           "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1CCN(CCOCP(=O)(O)O)CCP(=O)(O)O)N=CNC2=O"                                                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3L8 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2-{[2-(6-oxo-1,6-dihydro-9H-purin-9-yl)ethyl](2-phosphonoethyl)amino}ethoxy)methyl]phosphonic acid" 
3L8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[2-(6-oxidanylidene-1H-purin-9-yl)ethyl-(2-phosphonoethyl)amino]ethoxymethylphosphonic acid"        
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3L8 "Create component" 2014-09-11 RCSB 
3L8 "Initial release"  2015-01-07 RCSB 
# 
