data_0R8
# 
_chem_comp.id                                    0R8 
_chem_comp.name                                  "[(2S,5R)-5-{4-amino-5-[(4-ethynylphenyl)ethynyl]-2-oxopyrimidin-1(2H)-yl}tetrahydrofuran-2-yl]methyl dihydrogen phosphate" 
_chem_comp.type                                  "DNA LINKING" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C19 H18 N3 O6 P" 
_chem_comp.mon_nstd_parent_comp_id               DC 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-04-27 
_chem_comp.pdbx_modified_date                    2013-04-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        415.336 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0R8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ELV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0R8 "O5'"  "O5'"  O 0 1 N N N 24.677 -15.915 -9.693  -2.987 2.624  -0.190 "O5'"  0R8 1  
0R8 P      P      P 0 1 N N N 25.337 -14.474 -9.407  -2.186 4.000  -0.430 P      0R8 2  
0R8 OP1    OP1    O 0 1 N N N 24.403 -13.639 -8.421  -2.251 4.830  0.793  OP1    0R8 3  
0R8 OP2    OP2    O 0 1 N N N 25.651 -13.742 -10.778 -0.647 3.671  -0.774 OP2    0R8 4  
0R8 "C1'"  "C1'"  C 0 1 N N R 23.788 -19.679 -8.754  -3.497 -1.672 0.034  "C1'"  0R8 5  
0R8 N1     N1     N 0 1 N N N 23.425 -19.305 -7.398  -2.235 -2.393 -0.144 N1     0R8 6  
0R8 C6     C6     C 0 1 N N N 23.623 -18.056 -6.908  -1.059 -1.717 -0.047 C6     0R8 7  
0R8 C5     C5     C 0 1 N N N 23.327 -17.805 -5.626  0.125  -2.409 -0.217 C5     0R8 8  
0R8 C1     C1     C 0 1 N N N 23.509 -16.499 -5.058  1.388  -1.742 -0.124 C1     0R8 9  
0R8 C3     C3     C 0 1 N N N 23.564 -15.430 -4.516  2.424  -1.195 -0.049 C3     0R8 10 
0R8 N3     N3     N 0 1 N N N 22.638 -20.009 -5.235  -1.145 -4.421 -0.569 N3     0R8 11 
0R8 C4     C4     C 0 1 N N N 22.807 -18.854 -4.735  0.048  -3.848 -0.493 C4     0R8 12 
0R8 C2     C2     C 0 1 N N N 22.950 -20.280 -6.608  -2.258 -3.712 -0.394 C2     0R8 13 
0R8 O2     O2     O 0 1 N N N 22.718 -21.401 -7.016  -3.335 -4.279 -0.467 O2     0R8 14 
0R8 N4     N4     N 0 1 N N N 22.581 -18.607 -3.428  1.192  -4.588 -0.671 N4     0R8 15 
0R8 "O4'"  "O4'"  O 0 1 N N N 24.824 -18.828 -9.233  -3.319 -0.291 -0.301 "O4'"  0R8 16 
0R8 "C4'"  "C4'"  C 0 1 N N S 24.477 -18.238 -10.500 -3.646 0.534  0.829  "C4'"  0R8 17 
0R8 "C3'"  "C3'"  C 0 1 N N N 22.940 -18.187 -10.417 -3.444 -0.376 2.066  "C3'"  0R8 18 
0R8 "C2'"  "C2'"  C 0 1 N N N 22.646 -19.571 -9.793  -3.938 -1.743 1.512  "C2'"  0R8 19 
0R8 "C5'"  "C5'"  C 0 1 N N N 25.133 -16.846 -10.670 -2.706 1.739  0.896  "C5'"  0R8 20 
0R8 C01    C01    C 0 1 Y N N 23.469 -14.197 -3.784  3.688  -0.528 0.043  C01    0R8 21 
0R8 C02    C02    C 0 1 Y N N 24.478 -13.231 -3.822  3.738  0.844  0.314  C02    0R8 22 
0R8 C03    C03    C 0 1 Y N N 24.333 -12.044 -3.097  4.944  1.479  0.402  C03    0R8 23 
0R8 C04    C04    C 0 1 Y N N 23.177 -11.837 -2.331  6.128  0.759  0.221  C04    0R8 24 
0R8 C05    C05    C 0 1 Y N N 22.164 -12.803 -2.293  6.080  -0.611 -0.050 C05    0R8 25 
0R8 C      C      C 0 1 Y N N 22.312 -13.985 -3.023  4.875  -1.249 -0.131 C      0R8 26 
0R8 C7     C7     C 0 1 N N N 23.016 -10.622 -1.573  7.392  1.426  0.313  C7     0R8 27 
0R8 C8     C8     C 0 1 N N N 22.860 -9.615  -0.932  8.428  1.973  0.388  C8     0R8 28 
0R8 HOP2   HOP2   H 0 0 N N N 25.218 -12.896 -10.792 -0.528 3.129  -1.566 HOP2   0R8 29 
0R8 "H1'"  "H1'"  H 0 1 N N N 24.143 -20.720 -8.754  -4.266 -2.110 -0.602 "H1'"  0R8 30 
0R8 H6     H6     H 0 1 N N N 24.014 -17.275 -7.543  -1.051 -0.656 0.157  H6     0R8 31 
0R8 H41    H41    H 0 1 N N N 22.272 -19.343 -2.826  2.060  -4.159 -0.614 H41    0R8 32 
0R8 H42    H42    H 0 1 N N N 22.722 -17.688 -3.061  1.131  -5.538 -0.854 H42    0R8 33 
0R8 H7     H7     H 0 1 N N N 24.779 -18.889 -11.333 -4.683 0.865  0.769  H7     0R8 34 
0R8 "H3'"  "H3'"  H 0 1 N N N 22.595 -17.368 -9.769  -2.392 -0.424 2.351  "H3'"  0R8 35 
0R8 "H3''" "H3''" H 0 0 N N N 22.483 -18.085 -11.412 -4.060 -0.046 2.902  "H3''" 0R8 36 
0R8 "H2'"  "H2'"  H 0 1 N N N 21.658 -19.594 -9.310  -5.022 -1.825 1.592  "H2'"  0R8 37 
0R8 "H2''" "H2''" H 0 0 N N N 22.706 -20.373 -10.544 -3.446 -2.570 2.025  "H2''" 0R8 38 
0R8 "H5'"  "H5'"  H 0 1 N N N 26.224 -16.954 -10.575 -1.673 1.398  0.828  "H5'"  0R8 39 
0R8 "H5''" "H5''" H 0 0 N N N 24.889 -16.459 -11.670 -2.854 2.263  1.840  "H5''" 0R8 40 
0R8 H14    H14    H 0 1 N N N 25.368 -13.401 -4.410  2.823  1.400  0.454  H14    0R8 41 
0R8 H15    H15    H 0 1 N N N 25.107 -11.291 -3.127  4.982  2.538  0.611  H15    0R8 42 
0R8 H16    H16    H 0 1 N N N 21.275 -12.636 -1.704  6.995  -1.166 -0.190 H16    0R8 43 
0R8 H17    H17    H 0 1 N N N 21.535 -14.735 -3.001  4.838  -2.309 -0.336 H17    0R8 44 
0R8 H18    H18    H 0 1 N N N 22.723 -8.728  -0.368  9.355  2.462  0.455  H18    0R8 45 
0R8 OP3    OP3    O 0 1 N Y N ?      ?       ?       -2.851 4.800  -1.658 OP3    0R8 46 
0R8 HOP3   H1     H 0 0 N Y N ?      ?       ?       -2.417 5.641  -1.860 H1     0R8 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0R8 OP2   P      SING N N 1  
0R8 "C5'" "C4'"  SING N N 2  
0R8 "C5'" "O5'"  SING N N 3  
0R8 "C4'" "C3'"  SING N N 4  
0R8 "C4'" "O4'"  SING N N 5  
0R8 "C3'" "C2'"  SING N N 6  
0R8 "C2'" "C1'"  SING N N 7  
0R8 "O5'" P      SING N N 8  
0R8 P     OP1    DOUB N N 9  
0R8 "O4'" "C1'"  SING N N 10 
0R8 "C1'" N1     SING N N 11 
0R8 N1    C6     SING N N 12 
0R8 N1    C2     SING N N 13 
0R8 O2    C2     DOUB N N 14 
0R8 C6    C5     DOUB N N 15 
0R8 C2    N3     SING N N 16 
0R8 C5    C1     SING N N 17 
0R8 C5    C4     SING N N 18 
0R8 N3    C4     DOUB N N 19 
0R8 C1    C3     TRIP N N 20 
0R8 C4    N4     SING N N 21 
0R8 C3    C01    SING N N 22 
0R8 C02   C01    DOUB Y N 23 
0R8 C02   C03    SING Y N 24 
0R8 C01   C      SING Y N 25 
0R8 C03   C04    DOUB Y N 26 
0R8 C     C05    DOUB Y N 27 
0R8 C04   C05    SING Y N 28 
0R8 C04   C7     SING N N 29 
0R8 C7    C8     TRIP N N 30 
0R8 OP2   HOP2   SING N N 31 
0R8 "C1'" "H1'"  SING N N 32 
0R8 C6    H6     SING N N 33 
0R8 N4    H41    SING N N 34 
0R8 N4    H42    SING N N 35 
0R8 "C4'" H7     SING N N 36 
0R8 "C3'" "H3'"  SING N N 37 
0R8 "C3'" "H3''" SING N N 38 
0R8 "C2'" "H2'"  SING N N 39 
0R8 "C2'" "H2''" SING N N 40 
0R8 "C5'" "H5'"  SING N N 41 
0R8 "C5'" "H5''" SING N N 42 
0R8 C02   H14    SING N N 43 
0R8 C03   H15    SING N N 44 
0R8 C05   H16    SING N N 45 
0R8 C     H17    SING N N 46 
0R8 C8    H18    SING N N 47 
0R8 P     OP3    SING N N 48 
0R8 OP3   HOP3   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0R8 SMILES           ACDLabs              12.01 "O=P(O)(O)OCC3OC(N2C(=O)N=C(N)C(C#Cc1ccc(C#C)cc1)=C2)CC3"                                                                                                                           
0R8 InChI            InChI                1.03  "InChI=1S/C19H18N3O6P/c1-2-13-3-5-14(6-4-13)7-8-15-11-22(19(23)21-18(15)20)17-10-9-16(28-17)12-27-29(24,25)26/h1,3-6,11,16-17H,9-10,12H2,(H2,20,21,23)(H2,24,25,26)/t16-,17+/m0/s1" 
0R8 InChIKey         InChI                1.03  IXTAGUCYLSQFGM-DLBZAZTESA-N                                                                                                                                                         
0R8 SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[C@H]3CC[C@@H](CO[P](O)(O)=O)O3"                                                                                                                  
0R8 SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1C#Cc2ccc(cc2)C#C)[CH]3CC[CH](CO[P](O)(O)=O)O3"                                                                                                                     
0R8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)[C@H]3CC[C@H](O3)COP(=O)(O)O"                                                                                                                     
0R8 SMILES           "OpenEye OEToolkits" 1.7.6 "C#Cc1ccc(cc1)C#CC2=CN(C(=O)N=C2N)C3CCC(O3)COP(=O)(O)O"                                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0R8 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2S,5R)-5-{4-amino-5-[(4-ethynylphenyl)ethynyl]-2-oxopyrimidin-1(2H)-yl}tetrahydrofuran-2-yl]methyl dihydrogen phosphate"  
0R8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S,5R)-5-[4-azanyl-5-[2-(4-ethynylphenyl)ethynyl]-2-oxidanylidene-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0R8 "Create component" 2012-04-27 RCSB 
0R8 "Initial release"  2013-04-24 RCSB 
# 
