data_0K8
#

_chem_comp.id                                   0K8
_chem_comp.name                                 "Ruthenium bis-(phenanthroline) 12,17-dihydro-naphthodipyridophenazine-12,17-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C50 H28 N8 O2 Ru"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "Ruthenium polypridyl complex"
_chem_comp.pdbx_formal_charge                   2
_chem_comp.pdbx_initial_date                    2021-06-07
_chem_comp.pdbx_modified_date                   2022-04-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       873.880
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0K8
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       7OTB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0K8  C10  C1   C   0  1  Y  N  N  -4.910  15.447  42.002  ?  ?  ?  C10  0K8   1  
0K8  C11  C2   C   0  1  Y  N  N  -4.776  16.316  40.876  ?  ?  ?  C11  0K8   2  
0K8  C12  C3   C   0  1  Y  N  N  -3.935  16.003  39.840  ?  ?  ?  C12  0K8   3  
0K8  C13  C4   C   0  1  Y  N  N  -4.192  14.252  42.085  ?  ?  ?  C13  0K8   4  
0K8  C14  C5   C   0  1  Y  N  N  -3.318  13.893  40.988  ?  ?  ?  C14  0K8   5  
0K8  C15  C6   C   0  1  Y  N  N  -3.185  14.787  39.857  ?  ?  ?  C15  0K8   6  
0K8  C17  C7   C   0  1  Y  N  N  -1.702  13.432  38.845  ?  ?  ?  C17  0K8   7  
0K8  C16  C8   C   0  1  Y  N  N  -1.810  12.550  39.951  ?  ?  ?  C16  0K8   8  
0K8  N7   N1   N   0  1  Y  N  N   3.388  10.528  37.950  ?  ?  ?  N7   0K8   9  
0K8  N6   N2   N   0  1  Y  N  N   0.126   8.740  36.007  ?  ?  ?  N6   0K8  10  
0K8  N1   N3   N   0  1  Y  N  N  -2.603  12.762  40.990  ?  ?  ?  N1   0K8  11  
0K8  N3   N4   N   0  1  Y  N  N   0.539   9.903  38.812  ?  ?  ?  N3   0K8  12  
0K8  C18  C9   C   0  1  Y  N  N  -1.036  11.306  39.939  ?  ?  ?  C18  0K8  13  
0K8  C19  C10  C   0  1  Y  N  N  -1.126  10.390  40.997  ?  ?  ?  C19  0K8  14  
0K8  C20  C11  C   0  1  Y  N  N  -0.349   9.236  40.928  ?  ?  ?  C20  0K8  15  
0K8  C21  C12  C   0  1  Y  N  N   0.469   9.029  39.819  ?  ?  ?  C21  0K8  16  
0K8  C22  C13  C   0  1  Y  N  N  -0.211  11.021  38.863  ?  ?  ?  C22  0K8  17  
0K8  C23  C14  C   0  1  Y  N  N  -0.102  11.928  37.755  ?  ?  ?  C23  0K8  18  
0K8  C24  C15  C   0  1  Y  N  N  -0.829  13.109  37.729  ?  ?  ?  C24  0K8  19  
0K8  C25  C16  C   0  1  Y  N  N   0.861  12.380  35.703  ?  ?  ?  C25  0K8  20  
0K8  C26  C17  C   0  1  Y  N  N   0.158  13.579  35.605  ?  ?  ?  C26  0K8  21  
0K8  C27  C18  C   0  1  Y  N  N  -0.690  13.950  36.624  ?  ?  ?  C27  0K8  22  
0K8  C28  C19  C   0  1  Y  N  N   3.620  10.221  34.654  ?  ?  ?  C28  0K8  23  
0K8  C29  C20  C   0  1  Y  N  N   3.994  10.129  33.308  ?  ?  ?  C29  0K8  24  
0K8  C30  C21  C   0  1  Y  N  N   3.154   9.508  32.401  ?  ?  ?  C30  0K8  25  
0K8  C31  C22  C   0  1  Y  N  N   1.627   9.111  34.211  ?  ?  ?  C31  0K8  26  
0K8  C32  C23  C   0  1  Y  N  N   1.933   8.968  32.853  ?  ?  ?  C32  0K8  27  
0K8  C33  C24  C   0  1  Y  N  N   0.979   8.312  31.994  ?  ?  ?  C33  0K8  28  
0K8  C34  C25  C   0  1  Y  N  N  -0.180   7.804  32.463  ?  ?  ?  C34  0K8  29  
0K8  C35  C26  C   0  1  Y  N  N  -0.518   7.942  33.844  ?  ?  ?  C35  0K8  30  
0K8  C36  C27  C   0  1  Y  N  N  -1.704   7.447  34.420  ?  ?  ?  C36  0K8  31  
0K8  C37  C28  C   0  1  Y  N  N  -1.930   7.630  35.769  ?  ?  ?  C37  0K8  32  
0K8  C38  C29  C   0  1  Y  N  N  -0.973   8.278  36.543  ?  ?  ?  C38  0K8  33  
0K8  C39  C30  C   0  1  Y  N  N   0.399   8.582  34.695  ?  ?  ?  C39  0K8  34  
0K8  C40  C31  C   0  1  Y  N  N   3.720  11.801  38.085  ?  ?  ?  C40  0K8  35  
0K8  C41  C32  C   0  1  Y  N  N   4.899  12.174  38.727  ?  ?  ?  C41  0K8  36  
0K8  C42  C33  C   0  1  Y  N  N   5.746  11.194  39.218  ?  ?  ?  C42  0K8  37  
0K8  C43  C34  C   0  1  Y  N  N   5.408   9.842  39.068  ?  ?  ?  C43  0K8  38  
0K8  C44  C35  C   0  1  Y  N  N   4.205   9.557  38.433  ?  ?  ?  C44  0K8  39  
0K8  C45  C36  C   0  1  Y  N  N   6.219   8.758  39.531  ?  ?  ?  C45  0K8  40  
0K8  C46  C37  C   0  1  Y  N  N   5.831   7.463  39.369  ?  ?  ?  C46  0K8  41  
0K8  C47  C38  C   0  1  Y  N  N   4.594   7.137  38.713  ?  ?  ?  C47  0K8  42  
0K8  C48  C39  C   0  1  Y  N  N   3.801   8.194  38.247  ?  ?  ?  C48  0K8  43  
0K8  C49  C40  C   0  1  Y  N  N   4.139   5.819  38.493  ?  ?  ?  C49  0K8  44  
0K8  C50  C41  C   0  1  Y  N  N   2.942   5.607  37.845  ?  ?  ?  C50  0K8  45  
0K8  C51  C42  C   0  1  Y  N  N   2.215   6.720  37.407  ?  ?  ?  C51  0K8  46  
0K8  C52  C43  C   0  1  N  N  N  -4.383  13.328  43.243  ?  ?  ?  C52  0K8  47  
0K8  C53  C44  C   0  1  Y  N  N  -5.472  13.694  44.188  ?  ?  ?  C53  0K8  48  
0K8  C54  C45  C   0  1  Y  N  N  -6.149  14.961  44.130  ?  ?  ?  C54  0K8  49  
0K8  C55  C46  C   0  1  Y  N  N  -5.847  12.753  45.142  ?  ?  ?  C55  0K8  50  
0K8  C56  C47  C   0  1  Y  N  N  -6.848  13.044  46.059  ?  ?  ?  C56  0K8  51  
0K8  C57  C48  C   0  1  Y  N  N  -7.492  14.275  46.020  ?  ?  ?  C57  0K8  52  
0K8  C58  C49  C   0  1  Y  N  N  -7.146  15.233  45.075  ?  ?  ?  C58  0K8  53  
0K8  C9   C50  C   0  1  N  N  N  -5.795  15.951  43.107  ?  ?  ?  C9   0K8  54  
0K8  N2   N5   N   0  1  Y  N  N  -2.398  14.556  38.807  ?  ?  ?  N2   0K8  55  
0K8  N4   N6   N   0  1  Y  N  N   0.721  11.577  36.753  ?  ?  ?  N4   0K8  56  
0K8  N5   N7   N   0  1  Y  N  N   2.465   9.713  35.102  ?  ?  ?  N5   0K8  57  
0K8  N8   N8   N   0  1  Y  N  N   2.640   7.963  37.598  ?  ?  ?  N8   0K8  58  
0K8  O59  O1   O   0  1  N  N  N  -3.810  12.243  43.291  ?  ?  ?  O59  0K8  59  
0K8  O60  O2   O   0  1  N  N  N  -6.361  17.040  43.051  ?  ?  ?  O60  0K8  60  
0K8  RU1  RU1  RU  2  0  N  N  N   1.659   9.734  37.048  ?  ?  ?  RU1  0K8  61  
0K8  H62  H1   H   0  1  N  N  N  -5.346  17.233  40.841  ?  ?  ?  H62  0K8  62  
0K8  H63  H2   H   0  1  N  N  N  -3.839  16.681  39.005  ?  ?  ?  H63  0K8  63  
0K8  H64  H3   H   0  1  N  N  N  -1.777  10.574  41.839  ?  ?  ?  H64  0K8  64  
0K8  H65  H4   H   0  1  N  N  N  -0.380   8.509  41.726  ?  ?  ?  H65  0K8  65  
0K8  H66  H5   H   0  1  N  N  N   1.067   8.131  39.772  ?  ?  ?  H66  0K8  66  
0K8  H67  H6   H   0  1  N  N  N   1.535  12.097  34.908  ?  ?  ?  H67  0K8  67  
0K8  H68  H7   H   0  1  N  N  N   0.277  14.211  34.738  ?  ?  ?  H68  0K8  68  
0K8  H69  H8   H   0  1  N  N  N  -1.240  14.878  36.569  ?  ?  ?  H69  0K8  69  
0K8  H70  H9   H   0  1  N  N  N   4.281  10.715  35.350  ?  ?  ?  H70  0K8  70  
0K8  H71  H10  H   0  1  N  N  N   4.936  10.542  32.979  ?  ?  ?  H71  0K8  71  
0K8  H72  H11  H   0  1  N  N  N   3.430   9.438  31.359  ?  ?  ?  H72  0K8  72  
0K8  H73  H12  H   0  1  N  N  N   1.199   8.224  30.940  ?  ?  ?  H73  0K8  73  
0K8  H74  H13  H   0  1  N  N  N  -0.854   7.292  31.792  ?  ?  ?  H74  0K8  74  
0K8  H75  H14  H   0  1  N  N  N  -2.430   6.929  33.811  ?  ?  ?  H75  0K8  75  
0K8  H76  H15  H   0  1  N  N  N  -2.844   7.273  36.221  ?  ?  ?  H76  0K8  76  
0K8  H77  H16  H   0  1  N  N  N  -1.141   8.401  37.603  ?  ?  ?  H77  0K8  77  
0K8  H78  H17  H   0  1  N  N  N   3.066  12.565  37.691  ?  ?  ?  H78  0K8  78  
0K8  H79  H18  H   0  1  N  N  N   5.150  13.218  38.841  ?  ?  ?  H79  0K8  79  
0K8  H80  H19  H   0  1  N  N  N   6.664  11.471  39.715  ?  ?  ?  H80  0K8  80  
0K8  H81  H20  H   0  1  N  N  N   7.158   8.971  40.019  ?  ?  ?  H81  0K8  81  
0K8  H82  H21  H   0  1  N  N  N   6.462   6.669  39.739  ?  ?  ?  H82  0K8  82  
0K8  H83  H22  H   0  1  N  N  N   4.728   4.979  38.832  ?  ?  ?  H83  0K8  83  
0K8  H84  H23  H   0  1  N  N  N   2.573   4.606  37.679  ?  ?  ?  H84  0K8  84  
0K8  H85  H24  H   0  1  N  N  N   1.277   6.562  36.896  ?  ?  ?  H85  0K8  85  
0K8  H86  H25  H   0  1  N  N  N  -5.357  11.791  45.169  ?  ?  ?  H86  0K8  86  
0K8  H87  H26  H   0  1  N  N  N  -7.127  12.313  46.804  ?  ?  ?  H87  0K8  87  
0K8  H88  H27  H   0  1  N  N  N  -8.273  14.490  46.735  ?  ?  ?  H88  0K8  88  
0K8  H89  H28  H   0  1  N  N  N  -7.647  16.190  45.069  ?  ?  ?  H89  0K8  89  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0K8  C33  C34  DOUB  Y  N    1  
0K8  C33  C32  SING  Y  N    2  
0K8  C30  C32  SING  Y  N    3  
0K8  C30  C29  DOUB  Y  N    4  
0K8  C34  C35  SING  Y  N    5  
0K8  C32  C31  DOUB  Y  N    6  
0K8  C29  C28  SING  Y  N    7  
0K8  C35  C36  SING  Y  N    8  
0K8  C35  C39  DOUB  Y  N    9  
0K8  C31  C39  SING  Y  N   10  
0K8  C31  N5   SING  Y  N   11  
0K8  C36  C37  DOUB  Y  N   12  
0K8  C28  N5   DOUB  Y  N   13  
0K8  C39  N6   SING  Y  N   14  
0K8  N5   RU1  SING  N  N   15  
0K8  C26  C25  SING  Y  N   16  
0K8  C26  C27  DOUB  Y  N   17  
0K8  C25  N4   DOUB  Y  N   18  
0K8  C37  C38  SING  Y  N   19  
0K8  N6   C38  DOUB  Y  N   20  
0K8  N6   RU1  SING  N  N   21  
0K8  C27  C24  SING  Y  N   22  
0K8  N4   RU1  SING  N  N   23  
0K8  N4   C23  SING  Y  N   24  
0K8  RU1  N8   SING  N  N   25  
0K8  RU1  N7   SING  N  N   26  
0K8  RU1  N3   SING  N  N   27  
0K8  C51  N8   DOUB  Y  N   28  
0K8  C51  C50  SING  Y  N   29  
0K8  N8   C48  SING  Y  N   30  
0K8  C24  C23  DOUB  Y  N   31  
0K8  C24  C17  SING  Y  N   32  
0K8  C23  C22  SING  Y  N   33  
0K8  C50  C49  DOUB  Y  N   34  
0K8  N7   C40  DOUB  Y  N   35  
0K8  N7   C44  SING  Y  N   36  
0K8  C40  C41  SING  Y  N   37  
0K8  C48  C44  SING  Y  N   38  
0K8  C48  C47  DOUB  Y  N   39  
0K8  C44  C43  DOUB  Y  N   40  
0K8  C49  C47  SING  Y  N   41  
0K8  C47  C46  SING  Y  N   42  
0K8  C41  C42  DOUB  Y  N   43  
0K8  N2   C17  SING  Y  N   44  
0K8  N2   C15  DOUB  Y  N   45  
0K8  N3   C22  SING  Y  N   46  
0K8  N3   C21  DOUB  Y  N   47  
0K8  C17  C16  DOUB  Y  N   48  
0K8  C22  C18  DOUB  Y  N   49  
0K8  C43  C42  SING  Y  N   50  
0K8  C43  C45  SING  Y  N   51  
0K8  C46  C45  DOUB  Y  N   52  
0K8  C21  C20  SING  Y  N   53  
0K8  C12  C15  SING  Y  N   54  
0K8  C12  C11  DOUB  Y  N   55  
0K8  C15  C14  SING  Y  N   56  
0K8  C18  C16  SING  Y  N   57  
0K8  C18  C19  SING  Y  N   58  
0K8  C16  N1   SING  Y  N   59  
0K8  C11  C10  SING  Y  N   60  
0K8  C20  C19  DOUB  Y  N   61  
0K8  C14  N1   DOUB  Y  N   62  
0K8  C14  C13  SING  Y  N   63  
0K8  C10  C13  DOUB  Y  N   64  
0K8  C10  C9   SING  N  N   65  
0K8  C13  C52  SING  N  N   66  
0K8  O60  C9   DOUB  N  N   67  
0K8  C9   C54  SING  N  N   68  
0K8  C52  O59  DOUB  N  N   69  
0K8  C52  C53  SING  N  N   70  
0K8  C54  C53  DOUB  Y  N   71  
0K8  C54  C58  SING  Y  N   72  
0K8  C53  C55  SING  Y  N   73  
0K8  C58  C57  DOUB  Y  N   74  
0K8  C55  C56  DOUB  Y  N   75  
0K8  C57  C56  SING  Y  N   76  
0K8  C11  H62  SING  N  N   77  
0K8  C12  H63  SING  N  N   78  
0K8  C19  H64  SING  N  N   79  
0K8  C20  H65  SING  N  N   80  
0K8  C21  H66  SING  N  N   81  
0K8  C25  H67  SING  N  N   82  
0K8  C26  H68  SING  N  N   83  
0K8  C27  H69  SING  N  N   84  
0K8  C28  H70  SING  N  N   85  
0K8  C29  H71  SING  N  N   86  
0K8  C30  H72  SING  N  N   87  
0K8  C33  H73  SING  N  N   88  
0K8  C34  H74  SING  N  N   89  
0K8  C36  H75  SING  N  N   90  
0K8  C37  H76  SING  N  N   91  
0K8  C38  H77  SING  N  N   92  
0K8  C40  H78  SING  N  N   93  
0K8  C41  H79  SING  N  N   94  
0K8  C42  H80  SING  N  N   95  
0K8  C45  H81  SING  N  N   96  
0K8  C46  H82  SING  N  N   97  
0K8  C49  H83  SING  N  N   98  
0K8  C50  H84  SING  N  N   99  
0K8  C51  H85  SING  N  N  100  
0K8  C55  H86  SING  N  N  101  
0K8  C56  H87  SING  N  N  102  
0K8  C57  H88  SING  N  N  103  
0K8  C58  H89  SING  N  N  104  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0K8  InChI             InChI                 1.03   "InChI=1S/C26H12N4O2.2C12H8N2.Ru/c31-25-13-5-1-2-6-14(13)26(32)19-15(25)9-10-18-24(19)30-23-17-8-4-12-28-21(17)20-16(22(23)29-18)7-3-11-27-20;2*1-3-9-5-6-10-4-2-8-14-12(10)11(9)13-7-1;/h1-12H;2*1-8H;/q;;;+2"  
0K8  InChIKey          InChI                 1.03   LEJPQQFNZLHEQD-UHFFFAOYSA-N  
0K8  SMILES_CANONICAL  CACTVS                3.385  "[Ru++].O=C1c2ccccc2C(=O)c3c1ccc4nc5c6cccnc6c7ncccc7c5nc34.c8cnc9c(c8)ccc%10cccnc9%10.c%11cnc%12c(c%11)ccc%13cccnc%12%13"  
0K8  SMILES            CACTVS                3.385  "[Ru++].O=C1c2ccccc2C(=O)c3c1ccc4nc5c6cccnc6c7ncccc7c5nc34.c8cnc9c(c8)ccc%10cccnc9%10.c%11cnc%12c(c%11)ccc%13cccnc%12%13"  
0K8  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)C(=O)c3ccc4c(c3C2=O)nc5c6c7c8c(c5n4)C=CC=[N]8[Ru+2]91([N]7=CC=C6)([N]2=CC=Cc3c2c2c(cc3)C=CC=[N]92)[N]2=CC=Cc3c2c2c(cc3)C=CC=[N]12"  
0K8  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)C(=O)c3ccc4c(c3C2=O)nc5c6c7c8c(c5n4)C=CC=[N]8[Ru+2]91([N]7=CC=C6)([N]2=CC=Cc3c2c2c(cc3)C=CC=[N]92)[N]2=CC=Cc3c2c2c(cc3)C=CC=[N]12"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     0K8
_pdbx_chem_comp_synonyms.name        "Ruthenium polypridyl complex"
_pdbx_chem_comp_synonyms.provenance  AUTHOR
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0K8  "Create component"    2021-06-07  PDBE  
0K8  "Other modification"  2021-06-07  PDBE  
0K8  "Initial release"     2022-04-06  RCSB  
##
