data_0G8
# 
_chem_comp.id                                    0G8 
_chem_comp.name                                  "[(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl trihydrogen diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H13 N3 O9 P2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-01-06 
_chem_comp.pdbx_modified_date                    2014-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.216 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     0G8 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VCW 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
0G8 O2    O2    O 0 1 N N N 31.262 11.254 14.242 4.772  -0.422 -1.551 O2    0G8 1  
0G8 C2    C2    C 0 1 N N N 30.779 12.196 14.861 4.404  0.342  -0.674 C2    0G8 2  
0G8 N3    N3    N 0 1 N N N 31.532 13.278 15.151 4.999  1.526  -0.544 N3    0G8 3  
0G8 C4    C4    C 0 1 N N N 31.025 14.317 15.843 4.618  2.376  0.400  C4    0G8 4  
0G8 N4    N4    N 0 1 N N N 31.800 15.359 16.113 5.241  3.596  0.525  N4    0G8 5  
0G8 C5    C5    C 0 1 N N N 29.709 14.304 16.277 3.570  2.021  1.275  C5    0G8 6  
0G8 C6    C6    C 0 1 N N N 28.902 13.211 15.999 2.974  0.814  1.130  C6    0G8 7  
0G8 N1    N1    N 0 1 N N N 29.456 12.140 15.275 3.398  -0.023 0.141  N1    0G8 8  
0G8 "C1'" "C1'" C 0 1 N N S 28.614 10.965 14.949 2.758  -1.330 -0.030 "C1'" 0G8 9  
0G8 "O4'" "O4'" O 0 1 N N N 27.791 10.665 16.088 1.698  -1.482 0.924  "O4'" 0G8 10 
0G8 "C2'" "C2'" C 0 1 N N N 27.680 11.312 13.786 2.129  -1.427 -1.450 "C2'" 0G8 11 
0G8 "S3'" "S3'" S 0 1 N N N 26.358 10.076 14.038 0.933  -2.799 -1.182 "S3'" 0G8 12 
0G8 "C4'" "C4'" C 0 1 N N R 26.934 9.580  15.699 0.870  -2.626 0.643  "C4'" 0G8 13 
0G8 "C5'" "C5'" C 0 1 N N N 25.792 9.485  16.708 -0.566 -2.374 1.107  "C5'" 0G8 14 
0G8 "O5'" "O5'" O 0 1 N N N 26.320 9.488  18.035 -1.067 -1.189 0.483  "O5'" 0G8 15 
0G8 PA    PA    P 0 1 N N N 25.357 9.859  19.267 -2.551 -0.622 0.742  PA    0G8 16 
0G8 O2A   O2A   O 0 1 N N N 24.010 9.314  19.002 -3.542 -1.681 0.449  O2A   0G8 17 
0G8 O1A   O1A   O 0 1 N N N 26.029 9.445  20.520 -2.690 -0.167 2.280  O1A   0G8 18 
0G8 O3A   O3A   O 0 1 N N N 25.339 11.468 19.230 -2.817 0.643  -0.218 O3A   0G8 19 
0G8 PB    PB    P 0 1 N N N 24.095 12.342 19.767 -4.137 1.446  -0.670 PB    0G8 20 
0G8 O1B   O1B   O 0 1 N N N 23.963 12.079 21.350 -4.565 2.473  0.494  O1B   0G8 21 
0G8 O3B   O3B   O 0 1 N N N 24.554 13.875 19.593 -3.831 2.265  -2.022 O3B   0G8 22 
0G8 O2B   O2B   O 0 1 N N N 22.823 12.067 19.069 -5.239 0.488  -0.912 O2B   0G8 23 
0G8 H1    H1    H 0 1 N N N 32.751 15.368 15.804 5.961  3.837  -0.078 H1    0G8 24 
0G8 H2    H2    H 0 1 N N N 31.433 16.135 16.626 4.959  4.215  1.217  H2    0G8 25 
0G8 H3    H3    H 0 1 N N N 29.313 15.143 16.830 3.248  2.702  2.049  H3    0G8 26 
0G8 H4    H4    H 0 1 N N N 27.874 13.183 16.330 2.170  0.520  1.787  H4    0G8 27 
0G8 H5    H5    H 0 1 N N N 29.243 10.105 14.677 3.494  -2.122 0.105  H5    0G8 28 
0G8 H6    H6    H 0 1 N N N 28.177 11.182 12.813 1.618  -0.504 -1.721 H6    0G8 29 
0G8 H7    H7    H 0 1 N N N 27.296 12.340 13.867 2.878  -1.696 -2.196 H7    0G8 30 
0G8 H8    H8    H 0 1 N N N 27.468 8.623  15.600 1.275  -3.517 1.124  H8    0G8 31 
0G8 H9    H9    H 0 1 N N N 25.119 10.346 16.580 -1.192 -3.222 0.830  H9    0G8 32 
0G8 H10   H10   H 0 1 N N N 25.232 8.553  16.540 -0.582 -2.248 2.190  H10   0G8 33 
0G8 H11   H11   H 0 1 N N N 25.464 8.853  21.002 -2.070 0.527  2.543  H11   0G8 34 
0G8 H12   H12   H 0 1 N N N 23.080 11.791 21.551 -3.890 3.131  0.706  H12   0G8 35 
0G8 H13   H13   H 0 1 N N N 23.916 14.339 19.064 -4.584 2.773  -2.353 H13   0G8 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
0G8 "C2'" "S3'" SING N N 1  
0G8 "C2'" "C1'" SING N N 2  
0G8 "S3'" "C4'" SING N N 3  
0G8 O2    C2    DOUB N N 4  
0G8 C2    N3    SING N N 5  
0G8 C2    N1    SING N N 6  
0G8 "C1'" N1    SING N N 7  
0G8 "C1'" "O4'" SING N N 8  
0G8 N3    C4    DOUB N N 9  
0G8 N1    C6    SING N N 10 
0G8 "C4'" "O4'" SING N N 11 
0G8 "C4'" "C5'" SING N N 12 
0G8 C4    N4    SING N N 13 
0G8 C4    C5    SING N N 14 
0G8 C6    C5    DOUB N N 15 
0G8 "C5'" "O5'" SING N N 16 
0G8 "O5'" PA    SING N N 17 
0G8 O2A   PA    DOUB N N 18 
0G8 O2B   PB    DOUB N N 19 
0G8 O3A   PA    SING N N 20 
0G8 O3A   PB    SING N N 21 
0G8 PA    O1A   SING N N 22 
0G8 O3B   PB    SING N N 23 
0G8 PB    O1B   SING N N 24 
0G8 N4    H1    SING N N 25 
0G8 N4    H2    SING N N 26 
0G8 C5    H3    SING N N 27 
0G8 C6    H4    SING N N 28 
0G8 "C1'" H5    SING N N 29 
0G8 "C2'" H6    SING N N 30 
0G8 "C2'" H7    SING N N 31 
0G8 "C4'" H8    SING N N 32 
0G8 "C5'" H9    SING N N 33 
0G8 "C5'" H10   SING N N 34 
0G8 O1A   H11   SING N N 35 
0G8 O1B   H12   SING N N 36 
0G8 O3B   H13   SING N N 37 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
0G8 SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)CS2"                                                                                                         
0G8 InChI            InChI                1.03  "InChI=1S/C8H13N3O9P2S/c9-5-1-2-11(8(12)10-5)6-4-23-7(19-6)3-18-22(16,17)20-21(13,14)15/h1-2,6-7H,3-4H2,(H,16,17)(H2,9,10,12)(H2,13,14,15)/t6-,7+/m0/s1" 
0G8 InChIKey         InChI                1.03  AAHOBGDTTMOZKD-NKWVEPMBSA-N                                                                                                                              
0G8 SMILES_CANONICAL CACTVS               3.370 "NC1=NC(=O)N(C=C1)[C@@H]2CS[C@H](CO[P](O)(=O)O[P](O)(O)=O)O2"                                                                                            
0G8 SMILES           CACTVS               3.370 "NC1=NC(=O)N(C=C1)[CH]2CS[CH](CO[P](O)(=O)O[P](O)(O)=O)O2"                                                                                               
0G8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H](O[C@H](S1)COP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N"                                                                                                 
0G8 SMILES           "OpenEye OEToolkits" 1.7.6 "C1C(OC(S1)COP(=O)(O)OP(=O)(O)O)N2C=CC(=NC2=O)N"                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
0G8 "SYSTEMATIC NAME" ACDLabs              12.01 "[(2R,5S)-5-(4-amino-2-oxopyrimidin-1(2H)-yl)-1,3-oxathiolan-2-yl]methyl trihydrogen diphosphate"              
0G8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,5S)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
0G8 "Create component" 2012-01-06 RCSB 
0G8 "Initial release"  2014-08-27 RCSB 
# 
