data_YM7
# 
_chem_comp.id                                    YM7 
_chem_comp.name                                  "5-({6-[(piperidin-4-ylmethyl)amino]pyrimidin-4-yl}amino)pyrazine-2-carbonitrile" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H18 N8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-06-06 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        310.357 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YM7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YM7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YM7 CAI  CAI  C 0 1 N N N 10.153 10.333 0.738  -5.377 -1.573 0.539  CAI  YM7 1  
YM7 CAG  CAG  C 0 1 N N N 11.556 10.616 1.201  -6.901 -1.430 0.509  CAG  YM7 2  
YM7 NAP  NAP  N 0 1 N N N 12.432 9.457  1.103  -7.312 -0.827 -0.765 NAP  YM7 3  
YM7 CAH  CAH  C 0 1 N N N 11.863 8.265  1.737  -6.748 0.520  -0.922 CAH  YM7 4  
YM7 CAJ  CAJ  C 0 1 N N N 10.478 7.974  1.239  -5.220 0.435  -0.935 CAJ  YM7 5  
YM7 CAW  CAW  C 0 1 N N N 9.594  9.128  1.373  -4.737 -0.191 0.376  CAW  YM7 6  
YM7 CAK  CAK  C 0 1 N N N 8.203  8.779  0.729  -3.214 -0.335 0.344  CAK  YM7 7  
YM7 NAQ  NAQ  N 0 1 N N N 7.767  7.399  0.799  -2.599 0.995  0.308  NAQ  YM7 8  
YM7 C6   C6   C 0 1 Y N N 6.322  7.087  0.985  -1.219 1.119  0.275  C6   YM7 9  
YM7 C5   C5   C 0 1 Y N N 5.817  5.738  0.699  -0.407 -0.012 0.275  C5   YM7 10 
YM7 N1   N1   N 0 1 Y N N 5.480  8.040  1.403  -0.650 2.323  0.237  N1   YM7 11 
YM7 C2   C2   C 0 1 Y N N 4.160  7.753  1.565  0.661  2.450  0.205  C2   YM7 12 
YM7 N3   N3   N 0 1 Y N N 3.642  6.454  1.293  1.462  1.405  0.209  N3   YM7 13 
YM7 C4   C4   C 0 1 Y N N 4.426  5.480  0.879  0.971  0.167  0.241  C4   YM7 14 
YM7 NAR  NAR  N 0 1 N N N 3.885  4.237  0.644  1.824  -0.929 0.240  NAR  YM7 15 
YM7 CAT  CAT  C 0 1 Y N N 4.695  3.042  0.335  3.191  -0.744 0.095  CAT  YM7 16 
YM7 CAE  CAE  C 0 1 Y N N 4.081  1.930  -0.289 4.037  -1.850 -0.016 CAE  YM7 17 
YM7 NAN  NAN  N 0 1 Y N N 4.789  0.806  -0.533 5.334  -1.676 -0.153 NAN  YM7 18 
YM7 CAS  CAS  C 0 1 Y N N 6.070  0.739  -0.172 5.842  -0.444 -0.185 CAS  YM7 19 
YM7 CAB  CAB  C 0 1 N N N 6.856  -0.502 -0.429 7.253  -0.254 -0.335 CAB  YM7 20 
YM7 NAA  NAA  N 0 1 N N N 7.457  -1.451 -0.614 8.373  -0.103 -0.453 NAA  YM7 21 
YM7 CAD  CAD  C 0 1 Y N N 6.705  1.865  0.458  4.996  0.661  -0.074 CAD  YM7 22 
YM7 NAO  NAO  N 0 1 Y N N 6.004  2.983  0.701  3.694  0.484  0.058  NAO  YM7 23 
YM7 HAI1 HAI1 H 0 0 N N N 9.516  11.194 0.989  -5.071 -2.006 1.491  HAI1 YM7 24 
YM7 HAI2 HAI2 H 0 0 N N N 10.162 10.188 -0.352 -5.057 -2.221 -0.277 HAI2 YM7 25 
YM7 HAG1 HAG1 H 0 0 N N N 11.973 11.424 0.582  -7.360 -2.414 0.610  HAG1 YM7 26 
YM7 HAG2 HAG2 H 0 0 N N N 11.520 10.940 2.252  -7.222 -0.793 1.333  HAG2 YM7 27 
YM7 HAW  HAW  H 0 1 N N N 9.427  9.332  2.441  -5.026 0.445  1.212  HAW  YM7 28 
YM7 HAP  HAP  H 0 1 N N N 12.594 9.259  0.136  -7.060 -1.418 -1.543 HAP  YM7 29 
YM7 HAH1 HAH1 H 0 0 N N N 12.509 7.402  1.517  -7.096 0.952  -1.860 HAH1 YM7 30 
YM7 HAH2 HAH2 H 0 0 N N N 11.824 8.425  2.825  -7.070 1.148  -0.091 HAH2 YM7 31 
YM7 HAJ1 HAJ1 H 0 0 N N N 10.535 7.692  0.177  -4.897 -0.182 -1.774 HAJ1 YM7 32 
YM7 HAJ2 HAJ2 H 0 0 N N N 10.061 7.138  1.819  -4.801 1.436  -1.036 HAJ2 YM7 33 
YM7 HAK1 HAK1 H 0 0 N N N 7.442  9.392  1.234  -2.880 -0.866 1.235  HAK1 YM7 34 
YM7 HAK2 HAK2 H 0 0 N N N 8.252  9.057  -0.334 -2.920 -0.895 -0.544 HAK2 YM7 35 
YM7 HAQ  HAQ  H 0 1 N N N 8.050  6.962  -0.055 -3.158 1.788  0.308  HAQ  YM7 36 
YM7 H5   H5   H 0 1 N N N 6.484  4.959  0.360  -0.837 -1.002 0.301  H5   YM7 37 
YM7 H2   H2   H 0 1 N N N 3.490  8.527  1.908  1.091  3.440  0.175  H2   YM7 38 
YM7 HAR  HAR  H 0 1 N N N 2.891  4.138  0.685  1.463  -1.824 0.339  HAR  YM7 39 
YM7 HAE  HAE  H 0 1 N N N 3.040  1.981  -0.572 3.627  -2.849 0.010  HAE  YM7 40 
YM7 HAD  HAD  H 0 1 N N N 7.747  1.811  0.736  5.406  1.660  -0.100 HAD  YM7 41 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YM7 CAI CAG  SING N N 1  
YM7 CAI CAW  SING N N 2  
YM7 CAG NAP  SING N N 3  
YM7 NAP CAH  SING N N 4  
YM7 CAH CAJ  SING N N 5  
YM7 CAJ CAW  SING N N 6  
YM7 CAW CAK  SING N N 7  
YM7 CAK NAQ  SING N N 8  
YM7 NAQ C6   SING N N 9  
YM7 C6  C5   SING Y N 10 
YM7 C6  N1   DOUB Y N 11 
YM7 C5  C4   DOUB Y N 12 
YM7 N1  C2   SING Y N 13 
YM7 C2  N3   DOUB Y N 14 
YM7 N3  C4   SING Y N 15 
YM7 C4  NAR  SING N N 16 
YM7 NAR CAT  SING N N 17 
YM7 CAT CAE  SING Y N 18 
YM7 CAT NAO  DOUB Y N 19 
YM7 CAE NAN  DOUB Y N 20 
YM7 NAN CAS  SING Y N 21 
YM7 CAS CAB  SING N N 22 
YM7 CAS CAD  DOUB Y N 23 
YM7 CAB NAA  TRIP N N 24 
YM7 CAD NAO  SING Y N 25 
YM7 CAI HAI1 SING N N 26 
YM7 CAI HAI2 SING N N 27 
YM7 CAG HAG1 SING N N 28 
YM7 CAG HAG2 SING N N 29 
YM7 CAW HAW  SING N N 30 
YM7 NAP HAP  SING N N 31 
YM7 CAH HAH1 SING N N 32 
YM7 CAH HAH2 SING N N 33 
YM7 CAJ HAJ1 SING N N 34 
YM7 CAJ HAJ2 SING N N 35 
YM7 CAK HAK1 SING N N 36 
YM7 CAK HAK2 SING N N 37 
YM7 NAQ HAQ  SING N N 38 
YM7 C5  H5   SING N N 39 
YM7 C2  H2   SING N N 40 
YM7 NAR HAR  SING N N 41 
YM7 CAE HAE  SING N N 42 
YM7 CAD HAD  SING N N 43 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YM7 SMILES           ACDLabs              12.01 "N#Cc1ncc(nc1)Nc3ncnc(NCC2CCNCC2)c3"                                                                                              
YM7 InChI            InChI                1.03  "InChI=1S/C15H18N8/c16-6-12-8-20-15(9-18-12)23-14-5-13(21-10-22-14)19-7-11-1-3-17-4-2-11/h5,8-11,17H,1-4,7H2,(H2,19,20,21,22,23)" 
YM7 InChIKey         InChI                1.03  LNWARQATROLGJR-UHFFFAOYSA-N                                                                                                       
YM7 SMILES_CANONICAL CACTVS               3.385 "N#Cc1cnc(Nc2cc(NCC3CCNCC3)ncn2)cn1"                                                                                              
YM7 SMILES           CACTVS               3.385 "N#Cc1cnc(Nc2cc(NCC3CCNCC3)ncn2)cn1"                                                                                              
YM7 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(ncnc1Nc2cnc(cn2)C#N)NCC3CCNCC3"                                                                                              
YM7 SMILES           "OpenEye OEToolkits" 1.9.2 "c1c(ncnc1Nc2cnc(cn2)C#N)NCC3CCNCC3"                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YM7 "SYSTEMATIC NAME" ACDLabs              12.01 "5-({6-[(piperidin-4-ylmethyl)amino]pyrimidin-4-yl}amino)pyrazine-2-carbonitrile" 
YM7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-[[6-(piperidin-4-ylmethylamino)pyrimidin-4-yl]amino]pyrazine-2-carbonitrile"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YM7 "Create component"  2011-06-06 EBI  
YM7 "Modify descriptor" 2014-09-05 RCSB 
# 
